RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	CHRM1	P11229	460 aa	Predicted RBP	13.13	□□□□□ -0.31
CD44-231	ENST00000531110	CD44	P16070	742 aa	Known RBP	13.13	□□□□□ -0.31
CD44-231	ENST00000531110	CCDC61	Q9Y6R9	512 aa		13.1	□□□□□ -0.31
CD44-231	ENST00000531110	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.09	□□□□□ -0.31
CD44-231	ENST00000531110	ECM2	O94769	699 aa	Predicted RBP	13.07	□□□□□ -0.32
CD44-231	ENST00000531110	ZNF579	Q8NAF0	562 aa	Known RBP	13.04	□□□□□ -0.32
CD44-231	ENST00000531110	ZRANB1	Q9UGI0	708 aa		13.04	□□□□□ -0.32
CD44-231	ENST00000531110	HAX1	O00165	279 aa		13.03	□□□□□ -0.32
CD44-231	ENST00000531110	CLCN6	P51797	869 aa		13.01	□□□□□ -0.33
CD44-231	ENST00000531110	SGIP1	Q9BQI5	828 aa		13.01	□□□□□ -0.33
CD44-231	ENST00000531110	PYGB	P11216	843 aa		12.97	□□□□□ -0.33
CD44-231	ENST00000531110	KIF12	Q96FN5	646 aa		12.95	□□□□□ -0.34
CD44-231	ENST00000531110	TAOK2	Q9UL54	1235 aa		12.95	□□□□□ -0.34
CD44-231	ENST00000531110	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.94	□□□□□ -0.34
CD44-231	ENST00000531110	RGL2	O15211	777 aa		12.93	□□□□□ -0.34
CD44-231	ENST00000531110	RIOK3	O14730	519 aa	Known RBP	12.92	□□□□□ -0.34
CD44-231	ENST00000531110	RNF25	Q96BH1	459 aa	Predicted RBP	12.91	□□□□□ -0.34
CD44-231	ENST00000531110	PHF12	Q96QT6	1004 aa		12.89	□□□□□ -0.35
CD44-231	ENST00000531110	MAP3K13	O43283	966 aa		12.88	□□□□□ -0.35
CD44-231	ENST00000531110	EVX2	Q03828	476 aa		12.88	□□□□□ -0.35
CD44-231	ENST00000531110	PCDHB13	Q9Y5F0	798 aa		12.87	□□□□□ -0.35
CD44-231	ENST00000531110	VGF	O15240	615 aa	Predicted RBP	12.86	□□□□□ -0.35
CD44-231	ENST00000531110	IFNL1	Q8IU54	200 aa		12.81	□□□□□ -0.36
CD44-231	ENST00000531110	PDAP1	Q13442	181 aa	Known RBP	12.8	□□□□□ -0.36
CD44-231	ENST00000531110	MS4A3	Q96HJ5	214 aa		12.78	□□□□□ -0.36
CD44-231	ENST00000531110	PCDHB8	Q9UN66	801 aa		12.77	□□□□□ -0.37
CD44-231	ENST00000531110	DCAF8L2	P0C7V8	631 aa		12.76	□□□□□ -0.37
CD44-231	ENST00000531110	HS6ST3	Q8IZP7	471 aa		12.76	□□□□□ -0.37
CD44-231	ENST00000531110	SP7	Q8TDD2	431 aa	Predicted RBP	12.74	□□□□□ -0.37
CD44-231	ENST00000531110	DNAJC5	Q9H3Z4	198 aa		12.74	□□□□□ -0.37
CD44-231	ENST00000531110	TIE1	P35590	1138 aa		12.72	□□□□□ -0.37
CD44-231	ENST00000531110	PSEN1	P49768	467 aa		12.72	□□□□□ -0.37
CD44-231	ENST00000531110	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.71	□□□□□ -0.37
CD44-231	ENST00000531110	GALR2	O43603	387 aa	Predicted RBP	12.71	□□□□□ -0.37
CD44-231	ENST00000531110	GABBR2	O75899	941 aa		12.71	□□□□□ -0.37
CD44-231	ENST00000531110	ZFP91	Q96JP5	570 aa	Predicted RBP	12.71	□□□□□ -0.37
CD44-231	ENST00000531110	STK25	O00506	426 aa		12.68	□□□□□ -0.38
CD44-231	ENST00000531110	CHGA	P10645	457 aa	Known RBP	12.68	□□□□□ -0.38
CD44-231	ENST00000531110	BBX	Q8WY36	941 aa	Predicted RBP	12.65	□□□□□ -0.38
CD44-231	ENST00000531110	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.65	□□□□□ -0.38
CD44-231	ENST00000531110	TMEM106C	Q9BVX2	250 aa		12.62	□□□□□ -0.39
CD44-231	ENST00000531110	TRPC6	Q9Y210	931 aa		12.62	□□□□□ -0.39
CD44-231	ENST00000531110	STK24	Q9Y6E0	443 aa		12.62	□□□□□ -0.39
CD44-231	ENST00000531110	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.61	□□□□□ -0.39
CD44-231	ENST00000531110	TTLL13P	A6NNM8	815 aa		12.6	□□□□□ -0.39
CD44-231	ENST00000531110	ASTL	Q6HA08	431 aa	Predicted RBP	12.6	□□□□□ -0.39
CD44-231	ENST00000531110	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.56	□□□□□ -0.4
CD44-231	ENST00000531110	ATMIN	O43313	823 aa	Predicted RBP	12.55	□□□□□ -0.4
CD44-231	ENST00000531110	DCBLD2	Q96PD2	775 aa		12.55	□□□□□ -0.4
CD44-231	ENST00000531110	RYDEN	Q9NUL5	291 aa	Known RBP	12.54	□□□□□ -0.4
CD44-231	ENST00000531110	CABP2	Q9NPB3	220 aa		12.53	□□□□□ -0.4
CD44-231	ENST00000531110	SOX12	O15370	315 aa		12.52	□□□□□ -0.41
CD44-231	ENST00000531110	GOLGA2	Q08379	1002 aa		12.52	□□□□□ -0.41
CD44-231	ENST00000531110	IER5L	Q5T953	404 aa		12.51	□□□□□ -0.41
CD44-231	ENST00000531110	TRIM35	Q9UPQ4	493 aa		12.51	□□□□□ -0.41
CD44-231	ENST00000531110	ATN1	P54259	1190 aa	Predicted RBP	12.5	□□□□□ -0.41
CD44-231	ENST00000531110	NKX1-1	Q15270	411 aa	Predicted RBP	12.49	□□□□□ -0.41
CD44-231	ENST00000531110	MKRN3	Q13064	507 aa	Known RBP	12.47	□□□□□ -0.41
CD44-231	ENST00000531110	EFCAB3	Q8N7B9	438 aa		12.47	□□□□□ -0.41
CD44-231	ENST00000531110	ILDR1	Q86SU0	546 aa	Predicted RBP	12.46	□□□□□ -0.41
CD44-231	ENST00000531110	NLRP6	P59044	892 aa		12.44	□□□□□ -0.42
CD44-231	ENST00000531110	PLCB2	Q00722	1185 aa		12.44	□□□□□ -0.42
CD44-231	ENST00000531110	SPRYD3	Q8NCJ5	442 aa		12.44	□□□□□ -0.42
CD44-231	ENST00000531110	POTEI	P0CG38	1075 aa		12.43	□□□□□ -0.42
CD44-231	ENST00000531110	MFRP	Q9BY79	579 aa		12.43	□□□□□ -0.42
CD44-231	ENST00000531110	SLC39A7	Q92504	469 aa		12.42	□□□□□ -0.42
CD44-231	ENST00000531110	GTPBP6	O43824	516 aa	Predicted RBP	12.41	□□□□□ -0.42
CD44-231	ENST00000531110	FBXO22	Q8NEZ5	403 aa		12.41	□□□□□ -0.42
CD44-231	ENST00000531110	C7	P10643	843 aa		12.4	□□□□□ -0.42
CD44-231	ENST00000531110	IRX5	P78411	483 aa	Predicted RBP	12.38	□□□□□ -0.43
CD44-231	ENST00000531110	PELP1	Q8IZL8	1130 aa	Known RBP	12.38	□□□□□ -0.43
CD44-231	ENST00000531110	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.37	□□□□□ -0.43
CD44-231	ENST00000531110	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.36	□□□□□ -0.43
CD44-231	ENST00000531110	PHF8	Q9UPP1	1060 aa		12.36	□□□□□ -0.43
CD44-231	ENST00000531110	OCEL1	Q9H607	264 aa		12.35	□□□□□ -0.43
CD44-231	ENST00000531110	MS4A4A	Q96JQ5	239 aa		12.32	□□□□□ -0.44
CD44-231	ENST00000531110	CFAP44	Q96MT7	982 aa		12.32	□□□□□ -0.44
CD44-231	ENST00000531110	PDCD7	Q8N8D1	485 aa	Known RBP	12.31	□□□□□ -0.44
CD44-231	ENST00000531110	METRN	Q9UJH8	293 aa		12.31	□□□□□ -0.44
CD44-231	ENST00000531110	PLCG2	P16885	1265 aa		12.3	□□□□□ -0.44
CD44-231	ENST00000531110	SEC24B	O95487	1268 aa		12.28	□□□□□ -0.44
CD44-231	ENST00000531110	COLQ	Q9Y215	455 aa	Predicted RBP	12.24	□□□□□ -0.45
CD44-231	ENST00000531110	POTEF	A5A3E0	1075 aa		12.23	□□□□□ -0.45
CD44-231	ENST00000531110	L3MBTL3	Q96JM7	780 aa	Predicted RBP	12.22	□□□□□ -0.45
CD44-231	ENST00000531110	PPP1R37	O75864	691 aa		12.2	□□□□□ -0.46
CD44-231	ENST00000531110	SLC24A1	O60721	1099 aa		12.19	□□□□□ -0.46
CD44-231	ENST00000531110	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.19	□□□□□ -0.46
CD44-231	ENST00000531110	BOLA1	Q9Y3E2	137 aa		12.17	□□□□□ -0.46
CD44-231	ENST00000531110	DPY19L2	Q6NUT2	758 aa		12.16	□□□□□ -0.46
CD44-231	ENST00000531110		G3V3G9	751 aa		12.15	□□□□□ -0.46
CD44-231	ENST00000531110	HAP1	P54257	671 aa	Predicted RBP	12.15	□□□□□ -0.46
CD44-231	ENST00000531110	MICALL2	Q8IY33	904 aa		12.15	□□□□□ -0.46
CD44-231	ENST00000531110	TSHZ2	Q9NRE2	1034 aa		12.12	□□□□□ -0.47
CD44-231	ENST00000531110	VSIG10	Q8N0Z9	540 aa		12.1	□□□□□ -0.47
CD44-231	ENST00000531110	MAMSTR	Q6ZN01	415 aa		12.05	□□□□□ -0.48
CD44-231	ENST00000531110	CRISPLD2	Q9H0B8	497 aa		12.04	□□□□□ -0.48
CD44-231	ENST00000531110	C3orf67	Q6ZVT6	689 aa		12.03	□□□□□ -0.48
CD44-231	ENST00000531110	CADPS2	Q86UW7	1296 aa		12.03	□□□□□ -0.48
CD44-231	ENST00000531110	PDE4A	P27815	886 aa		12.02	□□□□□ -0.49
CD44-231	ENST00000531110	POTEB2	H3BUK9	544 aa		12.01	□□□□□ -0.49

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