RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-212ENST00000498041 MIER1Q8N108 512 aa8.56□□□□□ -1.04
RIF1-212ENST00000498041 OTUD5Q96G74 571 aa8.56□□□□□ -1.04
RIF1-212ENST00000498041 METRNQ9UJH8 293 aa8.54□□□□□ -1.04
RIF1-212ENST00000498041 PLEKHG5O94827 1062 aa8.53□□□□□ -1.04
RIF1-212ENST00000498041 ATMINO43313 823 aaPredicted RBP8.51□□□□□ -1.05
RIF1-212ENST00000498041 ASTLQ6HA08 431 aaPredicted RBP8.48□□□□□ -1.05
RIF1-212ENST00000498041 PLCD3Q8N3E9 789 aa8.48□□□□□ -1.05
RIF1-212ENST00000498041 CCDC61Q9Y6R9 512 aa8.48□□□□□ -1.05
RIF1-212ENST00000498041 ATN1P54259 1190 aaPredicted RBP8.47□□□□□ -1.05
RIF1-212ENST00000498041 SLC39A7Q92504 469 aa8.47□□□□□ -1.05
RIF1-212ENST00000498041 VASPP50552 380 aaPredicted RBP8.46□□□□□ -1.06
RIF1-212ENST00000498041 RASEFQ8IZ41 740 aa8.46□□□□□ -1.06
RIF1-212ENST00000498041 TRPC6Q9Y210 931 aa8.46□□□□□ -1.06
RIF1-212ENST00000498041 MAP3K13O43283 966 aa8.45□□□□□ -1.06
RIF1-212ENST00000498041 C7P10643 843 aa8.45□□□□□ -1.06
RIF1-212ENST00000498041 KIF12Q96FN5 646 aa8.45□□□□□ -1.06
RIF1-212ENST00000498041 POTEMA6NI47 508 aa8.43□□□□□ -1.06
RIF1-212ENST00000498041 POTEJP0CG39 1038 aa8.42□□□□□ -1.06
RIF1-212ENST00000498041 BMP2KQ9NSY1 1161 aaPredicted RBP8.42□□□□□ -1.06
RIF1-212ENST00000498041 POTEGQ6S5H5 508 aa8.41□□□□□ -1.06
RIF1-212ENST00000498041 FAM163AQ96GL9 167 aaPredicted RBP8.39□□□□□ -1.07
RIF1-212ENST00000498041 MAMSTRQ6ZN01 415 aa8.38□□□□□ -1.07
RIF1-212ENST00000498041 SCUBE2Q9NQ36 999 aa8.38□□□□□ -1.07
RIF1-212ENST00000498041 SEC24BO95487 1268 aa8.37□□□□□ -1.07
RIF1-212ENST00000498041 PCDHB13Q9Y5F0 798 aa8.36□□□□□ -1.07
RIF1-212ENST00000498041 IFNLR1Q8IU57 520 aaPredicted RBP8.34□□□□□ -1.07
RIF1-212ENST00000498041 ZBTB47Q9UFB7 747 aaPredicted RBP8.34□□□□□ -1.07
RIF1-212ENST00000498041 POTEFA5A3E0 1075 aa8.33□□□□□ -1.08
RIF1-212ENST00000498041 TTLL13PA6NNM8 815 aa8.33□□□□□ -1.08
RIF1-212ENST00000498041 TIE1P35590 1138 aa8.33□□□□□ -1.08
RIF1-212ENST00000498041 KLHL34Q8N239 644 aa8.33□□□□□ -1.08
RIF1-212ENST00000498041 COLQQ9Y215 455 aaPredicted RBP8.32□□□□□ -1.08
RIF1-212ENST00000498041 TRIM35Q9UPQ4 493 aa8.31□□□□□ -1.08
RIF1-212ENST00000498041 NUBP1P53384 320 aa8.29□□□□□ -1.08
RIF1-212ENST00000498041 FAM212AQ96EL1 285 aa8.29□□□□□ -1.08
RIF1-212ENST00000498041 DCAF8Q5TAQ9 597 aa8.28□□□□□ -1.08
RIF1-212ENST00000498041 IFNL1Q8IU54 200 aa8.28□□□□□ -1.08
RIF1-212ENST00000498041 TMEM106CQ9BVX2 250 aa8.27□□□□□ -1.09
RIF1-212ENST00000498041 SPOCK2Q92563 424 aa8.26□□□□□ -1.09
RIF1-212ENST00000498041 PYGBP11216 843 aa8.24□□□□□ -1.09
RIF1-212ENST00000498041 LCE2DQ5TA82 110 aaPredicted RBP8.23□□□□□ -1.09
RIF1-212ENST00000498041 PLCG2P16885 1265 aa8.22□□□□□ -1.09
RIF1-212ENST00000498041 SGIP1Q9BQI5 828 aa8.22□□□□□ -1.09
RIF1-212ENST00000498041 SLAIN1Q8ND83 568 aa8.21□□□□□ -1.1
RIF1-212ENST00000498041 IER5LQ5T953 404 aa8.19□□□□□ -1.1
RIF1-212ENST00000498041 PCDHB8Q9UN66 801 aa8.19□□□□□ -1.1
RIF1-212ENST00000498041 AMER1Q5JTC6 1135 aaPredicted RBP8.16□□□□□ -1.1
RIF1-212ENST00000498041 PCDH10Q9P2E7 1040 aa8.16□□□□□ -1.1
RIF1-212ENST00000498041 GSE1Q14687 1217 aa8.13□□□□□ -1.11
RIF1-212ENST00000498041 CDAN1Q8IWY9 1227 aa8.13□□□□□ -1.11
RIF1-212ENST00000498041 CIZ1Q9ULV3 898 aaPredicted RBP8.12□□□□□ -1.11
RIF1-212ENST00000498041 ST18O60284 1047 aa8.11□□□□□ -1.11
RIF1-212ENST00000498041 IRX5P78411 483 aaPredicted RBP8.11□□□□□ -1.11
RIF1-212ENST00000498041 GOLGA2Q08379 1002 aa8.1□□□□□ -1.11
RIF1-212ENST00000498041 OCEL1Q9H607 264 aa8.1□□□□□ -1.11
RIF1-212ENST00000498041 RTN4Q9NQC3 1192 aaKnown RBP8.1□□□□□ -1.11
RIF1-212ENST00000498041 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.08□□□□□ -1.12
RIF1-212ENST00000498041 PKD2Q13563 968 aa8.07□□□□□ -1.12
RIF1-212ENST00000498041 MKRN3Q13064 507 aaKnown RBP8.06□□□□□ -1.12
RIF1-212ENST00000498041 TRIM41Q8WV44 630 aa8.06□□□□□ -1.12
RIF1-212ENST00000498041 MARVELD3Q96A59 401 aa8.04□□□□□ -1.12
RIF1-212ENST00000498041 ECM2O94769 699 aaPredicted RBP8.03□□□□□ -1.12
RIF1-212ENST00000498041 ZNF467Q7Z7K2 595 aaPredicted RBP8.03□□□□□ -1.12
RIF1-212ENST00000498041 CHRM1P11229 460 aaPredicted RBP8.02□□□□□ -1.13
RIF1-212ENST00000498041 C3orf67Q6ZVT6 689 aa8.02□□□□□ -1.13
RIF1-212ENST00000498041 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.01□□□□□ -1.131e-9■■■□□ 17.6
RIF1-212ENST00000498041 PSEN1P49768 467 aa8□□□□□ -1.13
RIF1-212ENST00000498041 SNPHO15079 494 aa7.99□□□□□ -1.13
RIF1-212ENST00000498041 PDCD7Q8N8D1 485 aaKnown RBP7.98□□□□□ -1.13
RIF1-212ENST00000498041 L3MBTL3Q96JM7 780 aaPredicted RBP7.96□□□□□ -1.14
RIF1-212ENST00000498041 CABP2Q9NPB3 220 aa7.96□□□□□ -1.14
RIF1-212ENST00000498041 G3V3G9 751 aa7.94□□□□□ -1.14
RIF1-212ENST00000498041 EMP3P54852 163 aa7.94□□□□□ -1.14
RIF1-212ENST00000498041 DPY19L2Q6NUT2 758 aa7.94□□□□□ -1.14
RIF1-212ENST00000498041 RGL2O15211 777 aa7.93□□□□□ -1.14
RIF1-212ENST00000498041 PDAP1Q13442 181 aaKnown RBP7.93□□□□□ -1.14
RIF1-212ENST00000498041 TMEM121BQ9BXQ6 578 aaPredicted RBP7.93□□□□□ -1.14
RIF1-212ENST00000498041 RIOK3O14730 519 aaKnown RBP7.91□□□□□ -1.14
RIF1-212ENST00000498041 RNF25Q96BH1 459 aaPredicted RBP7.91□□□□□ -1.14
RIF1-212ENST00000498041 FAM205CA6NFA0 338 aa7.9□□□□□ -1.14
RIF1-212ENST00000498041 SPNS2Q8IVW8 549 aa7.9□□□□□ -1.14
RIF1-212ENST00000498041 TAOK2Q9UL54 1235 aa7.9□□□□□ -1.14
RIF1-212ENST00000498041 MMRN1Q13201 1228 aa7.89□□□□□ -1.15
RIF1-212ENST00000498041 DCAF8L2P0C7V8 631 aa7.88□□□□□ -1.15
RIF1-212ENST00000498041 VGFO15240 615 aaPredicted RBP7.87□□□□□ -1.15
RIF1-212ENST00000498041 HS3ST6Q96QI5 342 aa7.86□□□□□ -1.15
RIF1-212ENST00000498041 BOLA1Q9Y3E2 137 aa7.86□□□□□ -1.15
RIF1-212ENST00000498041 ZNF710Q8N1W2 664 aa7.84□□□□□ -1.15
RIF1-212ENST00000498041 POTEB3A0JP26 581 aa7.83□□□□□ -1.16
RIF1-212ENST00000498041 POTEBQ6S5H4 581 aa7.83□□□□□ -1.16
RIF1-212ENST00000498041 EFCAB3Q8N7B9 438 aa7.82□□□□□ -1.16
RIF1-212ENST00000498041 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.81□□□□□ -1.16
RIF1-212ENST00000498041 ZFP91Q96JP5 570 aaPredicted RBP7.81□□□□□ -1.16
RIF1-212ENST00000498041 STK25O00506 426 aa7.79□□□□□ -1.16
RIF1-212ENST00000498041 CHGAP10645 457 aaKnown RBP7.79□□□□□ -1.16
RIF1-212ENST00000498041 HS6ST3Q8IZP7 471 aa7.78□□□□□ -1.16
RIF1-212ENST00000498041 KRTAP3-3Q9BYR6 98 aa7.78□□□□□ -1.16
RIF1-212ENST00000498041 KRTAP3-2Q9BYR7 98 aa7.78□□□□□ -1.16
RIF1-212ENST00000498041 ERBB3P21860 1342 aa7.78□□□□□ -1.16
RIF1-212ENST00000498041 HOXB3P14651 431 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms