RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 METRNQ9UJH8 293 aa12.59□□□□□ -0.39
SF3B1-209ENST00000479532 FAM163AQ96GL9 167 aaPredicted RBP12.58□□□□□ -0.4
SF3B1-209ENST00000479532 C7P10643 843 aa12.57□□□□□ -0.4
SF3B1-209ENST00000479532 SLC39A7Q92504 469 aa12.56□□□□□ -0.4
SF3B1-209ENST00000479532 ASTLQ6HA08 431 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-209ENST00000479532 ATMINO43313 823 aaPredicted RBP12.49□□□□□ -0.41
SF3B1-209ENST00000479532 SCUBE2Q9NQ36 999 aa12.49□□□□□ -0.41
SF3B1-209ENST00000479532 POTEJP0CG39 1038 aa12.48□□□□□ -0.41
SF3B1-209ENST00000479532 MS4A3Q96HJ5 214 aa12.47□□□□□ -0.41
SF3B1-209ENST00000479532 LCE2DQ5TA82 110 aaPredicted RBP12.4□□□□□ -0.42
SF3B1-209ENST00000479532 ABCC9O60706 1549 aa12.37□□□□□ -0.43
SF3B1-209ENST00000479532 SPDYE4A6NLX3 237 aa12.37□□□□□ -0.43
SF3B1-209ENST00000479532 MNX1P50219 401 aaPredicted RBP12.36□□□□□ -0.43
SF3B1-209ENST00000479532 ATN1P54259 1190 aaPredicted RBP12.33□□□□□ -0.44
SF3B1-209ENST00000479532 TSPYL2Q9H2G4 693 aaPredicted RBP12.33□□□□□ -0.44
SF3B1-209ENST00000479532 CDAN1Q8IWY9 1227 aa12.3□□□□□ -0.44
SF3B1-209ENST00000479532 SEC24BO95487 1268 aa12.23□□□□□ -0.45
SF3B1-209ENST00000479532 BMP2KQ9NSY1 1161 aaPredicted RBP12.21□□□□□ -0.45
SF3B1-209ENST00000479532 KIF12Q96FN5 646 aa12.2□□□□□ -0.46
SF3B1-209ENST00000479532 POTEFA5A3E0 1075 aa12.19□□□□□ -0.46
SF3B1-209ENST00000479532 CCDC61Q9Y6R9 512 aa12.19□□□□□ -0.46
SF3B1-209ENST00000479532 TIE1P35590 1138 aa12.14□□□□□ -0.47
SF3B1-209ENST00000479532 TRPC6Q9Y210 931 aa12.12□□□□□ -0.47
SF3B1-209ENST00000479532 COLQQ9Y215 455 aaPredicted RBP12.12□□□□□ -0.47
SF3B1-209ENST00000479532 MAP3K13O43283 966 aa12.11□□□□□ -0.47
SF3B1-209ENST00000479532 ZCCHC6Q5VYS8 1495 aaKnown RBP12.09□□□□□ -0.47
SF3B1-209ENST00000479532 SLAIN1Q8ND83 568 aa12.08□□□□□ -0.48
SF3B1-209ENST00000479532 TTLL13PA6NNM8 815 aa12.06□□□□□ -0.48
SF3B1-209ENST00000479532 ST18O60284 1047 aa12.06□□□□□ -0.48
SF3B1-209ENST00000479532 PLEKHG5O94827 1062 aa12.05□□□□□ -0.48
SF3B1-209ENST00000479532 DCAF8L2P0C7V8 631 aa12.05□□□□□ -0.48
SF3B1-209ENST00000479532 NACADO15069 1562 aa12.04□□□□□ -0.48
SF3B1-209ENST00000479532 RB1CC1Q8TDY2 1594 aa12.03□□□□□ -0.48
SF3B1-209ENST00000479532 IER5LQ5T953 404 aa12.02□□□□□ -0.49
SF3B1-209ENST00000479532 MMRN1Q13201 1228 aa12.01□□□□□ -0.49
SF3B1-209ENST00000479532 TRIM35Q9UPQ4 493 aa12.01□□□□□ -0.49
SF3B1-209ENST00000479532 DCAF1Q9Y4B6 1507 aa12.01□□□□□ -0.49
SF3B1-209ENST00000479532 MYO15BQ96JP2 1530 aa12□□□□□ -0.49
SF3B1-209ENST00000479532 SPNS2Q8IVW8 549 aa11.98□□□□□ -0.49
SF3B1-209ENST00000479532 MIER1Q8N108 512 aa11.96□□□□□ -0.49
SF3B1-209ENST00000479532 RASEFQ8IZ41 740 aa11.95□□□□□ -0.5
SF3B1-209ENST00000479532 PCDHB13Q9Y5F0 798 aa11.93□□□□□ -0.5
SF3B1-209ENST00000479532 PLCG2P16885 1265 aa11.92□□□□□ -0.5
SF3B1-209ENST00000479532 SGIP1Q9BQI5 828 aa11.9□□□□□ -0.5
SF3B1-209ENST00000479532 TMEM121BQ9BXQ6 578 aaPredicted RBP11.9□□□□□ -0.5
SF3B1-209ENST00000479532 SNPHO15079 494 aa11.88□□□□□ -0.51
SF3B1-209ENST00000479532 FKBP8Q14318 412 aa11.86□□□□□ -0.51
SF3B1-209ENST00000479532 TMEM106CQ9BVX2 250 aa11.85□□□□□ -0.51
SF3B1-209ENST00000479532 MARVELD3Q96A59 401 aa11.83□□□□□ -0.52
SF3B1-209ENST00000479532 PROM2Q8N271 834 aa11.81□□□□□ -0.52
SF3B1-209ENST00000479532 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.8□□□□□ -0.52
SF3B1-209ENST00000479532 IFNL1Q8IU54 200 aa11.79□□□□□ -0.52
SF3B1-209ENST00000479532 PLCD3Q8N3E9 789 aa11.79□□□□□ -0.52
SF3B1-209ENST00000479532 OCEL1Q9H607 264 aa11.76□□□□□ -0.53
SF3B1-209ENST00000479532 IRX5P78411 483 aaPredicted RBP11.75□□□□□ -0.53
SF3B1-209ENST00000479532 UNC13AQ9UPW8 1703 aa11.73□□□□□ -0.53
SF3B1-209ENST00000479532 ZBTB47Q9UFB7 747 aaPredicted RBP11.72□□□□□ -0.53
SF3B1-209ENST00000479532 SCRIBQ14160 1630 aa11.71□□□□□ -0.53
SF3B1-209ENST00000479532 EMP3P54852 163 aa11.71□□□□□ -0.53
SF3B1-209ENST00000479532 FAM212AQ96EL1 285 aa11.68□□□□□ -0.54
SF3B1-209ENST00000479532 NUBP1P53384 320 aa11.65□□□□□ -0.54
SF3B1-209ENST00000479532 FAM205CA6NFA0 338 aa11.62□□□□□ -0.55
SF3B1-209ENST00000479532 C3orf67Q6ZVT6 689 aa11.62□□□□□ -0.55
SF3B1-209ENST00000479532 HS3ST6Q96QI5 342 aa11.6□□□□□ -0.55
SF3B1-209ENST00000479532 BICRAQ9NZM4 1560 aa11.58□□□□□ -0.56
SF3B1-209ENST00000479532 KRTAP3-3Q9BYR6 98 aa11.57□□□□□ -0.56
SF3B1-209ENST00000479532 KRTAP3-2Q9BYR7 98 aa11.57□□□□□ -0.56
SF3B1-209ENST00000479532 SHROOM4Q9ULL8 1493 aa11.56□□□□□ -0.56
SF3B1-209ENST00000479532 DCAF8Q5TAQ9 597 aa11.55□□□□□ -0.56
SF3B1-209ENST00000479532 L3MBTL3Q96JM7 780 aaPredicted RBP11.55□□□□□ -0.56
SF3B1-209ENST00000479532 RTN4Q9NQC3 1192 aaKnown RBP11.55□□□□□ -0.56
SF3B1-209ENST00000479532 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
SF3B1-209ENST00000479532 PYGBP11216 843 aa11.53□□□□□ -0.56
SF3B1-209ENST00000479532 GOLGA2Q08379 1002 aa11.53□□□□□ -0.56
SF3B1-209ENST00000479532 POTEB3A0JP26 581 aa11.52□□□□□ -0.57
SF3B1-209ENST00000479532 POTEBQ6S5H4 581 aa11.52□□□□□ -0.57
SF3B1-209ENST00000479532 PCDHB8Q9UN66 801 aa11.51□□□□□ -0.57
SF3B1-209ENST00000479532 MKRN3Q13064 507 aaKnown RBP11.49□□□□□ -0.57
SF3B1-209ENST00000479532 PDCD7Q8N8D1 485 aaKnown RBP11.45□□□□□ -0.58
SF3B1-209ENST00000479532 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.42□□□□□ -0.589e-23■■■□□ 15.1
SF3B1-209ENST00000479532 RNF166Q96A37 237 aaPredicted RBP11.41□□□□□ -0.58
SF3B1-209ENST00000479532 ZNF710Q8N1W2 664 aa11.39□□□□□ -0.59
SF3B1-209ENST00000479532 ERBB3P21860 1342 aa11.37□□□□□ -0.59
SF3B1-209ENST00000479532 G3V3G9 751 aa11.37□□□□□ -0.59
SF3B1-209ENST00000479532 ZNF467Q7Z7K2 595 aaPredicted RBP11.35□□□□□ -0.59
SF3B1-209ENST00000479532 MYT1LQ9UL68 1186 aa11.33□□□□□ -0.6
SF3B1-209ENST00000479532 HOXB1P14653 301 aaPredicted RBP11.3□□□□□ -0.6
SF3B1-209ENST00000479532 EIF4G1Q04637 1599 aaKnown RBP11.29□□□□□ -0.6
SF3B1-209ENST00000479532 FBXO3Q9UK99 471 aa11.29□□□□□ -0.6
SF3B1-209ENST00000479532 HOXB3P14651 431 aaPredicted RBP11.27□□□□□ -0.61
SF3B1-209ENST00000479532 DOK7Q18PE1 504 aa11.27□□□□□ -0.61
SF3B1-209ENST00000479532 PSEN1P49768 467 aa11.26□□□□□ -0.61
SF3B1-209ENST00000479532 DPY19L2Q6NUT2 758 aa11.26□□□□□ -0.61
SF3B1-209ENST00000479532 GSE1Q14687 1217 aa11.25□□□□□ -0.61
SF3B1-209ENST00000479532 BOLA1Q9Y3E2 137 aa11.25□□□□□ -0.61
SF3B1-209ENST00000479532 BAZ1AQ9NRL2 1556 aaPredicted RBP11.24□□□□□ -0.61
SF3B1-209ENST00000479532 RIMBP2O15034 1052 aa11.24□□□□□ -0.61
SF3B1-209ENST00000479532 VARS2Q5ST30 1063 aaKnown RBP11.24□□□□□ -0.61
SF3B1-209ENST00000479532 CC2D2AQ9P2K1 1620 aa11.22□□□□□ -0.61
SF3B1-209ENST00000479532 SMARCA4P51532 1647 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms