RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
CLK1-209ENST00000472679 PYGBP11216 843 aa15.16■□□□□ 0.02
CLK1-209ENST00000472679 RNF25Q96BH1 459 aaPredicted RBP15.13■□□□□ 0.01
CLK1-209ENST00000472679 CHRM1P11229 460 aaPredicted RBP15.12■□□□□ 0.01
CLK1-209ENST00000472679 CCDC61Q9Y6R9 512 aa15.12■□□□□ 0.01
CLK1-209ENST00000472679 CD44P16070 742 aaKnown RBP15.11■□□□□ 0.01
CLK1-209ENST00000472679 C19orf67A6NJJ6 358 aa15.08■□□□□ 0
CLK1-209ENST00000472679 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
CLK1-209ENST00000472679 ZRANB1Q9UGI0 708 aa15.07■□□□□ 0
CLK1-209ENST00000472679 RIOK3O14730 519 aaKnown RBP15.01□□□□□ -0.01
CLK1-209ENST00000472679 PHF12Q96QT6 1004 aa14.99□□□□□ -0.01
CLK1-209ENST00000472679 HAX1O00165 279 aa14.97□□□□□ -0.01
CLK1-209ENST00000472679 KIF12Q96FN5 646 aa14.97□□□□□ -0.01
CLK1-209ENST00000472679 EVX2Q03828 476 aa14.96□□□□□ -0.01
CLK1-209ENST00000472679 POTEHQ6S545 545 aa14.96□□□□□ -0.01
CLK1-209ENST00000472679 MAP3K13O43283 966 aa14.95□□□□□ -0.02
CLK1-209ENST00000472679 PCDHB8Q9UN66 801 aa14.94□□□□□ -0.02
CLK1-209ENST00000472679 PCDHB13Q9Y5F0 798 aa14.94□□□□□ -0.02
CLK1-209ENST00000472679 CHGAP10645 457 aaKnown RBP14.92□□□□□ -0.02
CLK1-209ENST00000472679 ZNF579Q8NAF0 562 aaKnown RBP14.92□□□□□ -0.02
CLK1-209ENST00000472679 VGFO15240 615 aaPredicted RBP14.89□□□□□ -0.03
CLK1-209ENST00000472679 IFNL1Q8IU54 200 aa14.89□□□□□ -0.03
CLK1-209ENST00000472679 ZNF467Q7Z7K2 595 aaPredicted RBP14.88□□□□□ -0.03
CLK1-209ENST00000472679 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.85□□□□□ -0.03
CLK1-209ENST00000472679 ZFP91Q96JP5 570 aaPredicted RBP14.85□□□□□ -0.03
CLK1-209ENST00000472679 SGIP1Q9BQI5 828 aa14.85□□□□□ -0.03
CLK1-209ENST00000472679 HS6ST3Q8IZP7 471 aa14.84□□□□□ -0.03
CLK1-209ENST00000472679 TAOK2Q9UL54 1235 aa14.84□□□□□ -0.03
CLK1-209ENST00000472679 STK25O00506 426 aa14.81□□□□□ -0.04
CLK1-209ENST00000472679 BBXQ8WY36 941 aaPredicted RBP14.81□□□□□ -0.04
CLK1-209ENST00000472679 MS4A3Q96HJ5 214 aa14.8□□□□□ -0.04
CLK1-209ENST00000472679 PDAP1Q13442 181 aaKnown RBP14.79□□□□□ -0.04
CLK1-209ENST00000472679 BCL11BQ9C0K0 894 aaPredicted RBP14.78□□□□□ -0.04
CLK1-209ENST00000472679 PSEN1P49768 467 aa14.77□□□□□ -0.05
CLK1-209ENST00000472679 TRPC6Q9Y210 931 aa14.76□□□□□ -0.05
CLK1-209ENST00000472679 STK24Q9Y6E0 443 aa14.75□□□□□ -0.05
CLK1-209ENST00000472679 GALR2O43603 387 aaPredicted RBP14.72□□□□□ -0.05
CLK1-209ENST00000472679 PLCB2Q00722 1185 aa14.71□□□□□ -0.05
CLK1-209ENST00000472679 DNAJC5Q9H3Z4 198 aa14.71□□□□□ -0.05
CLK1-209ENST00000472679 NKX1-1Q15270 411 aaPredicted RBP14.7□□□□□ -0.06
CLK1-209ENST00000472679 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.7□□□□□ -0.06
CLK1-209ENST00000472679 PAXIP1Q6ZW49 1069 aaPredicted RBP14.66□□□□□ -0.06
CLK1-209ENST00000472679 CFAP44Q96MT7 982 aa14.63□□□□□ -0.07
CLK1-209ENST00000472679 SLC24A1O60721 1099 aa14.62□□□□□ -0.07
CLK1-209ENST00000472679 TMEM106CQ9BVX2 250 aa14.62□□□□□ -0.07
CLK1-209ENST00000472679 GABBR2O75899 941 aa14.61□□□□□ -0.07
CLK1-209ENST00000472679 CLCN6P51797 869 aa14.6□□□□□ -0.07
CLK1-209ENST00000472679 CABP2Q9NPB3 220 aa14.6□□□□□ -0.07
CLK1-209ENST00000472679 SPRYD3Q8NCJ5 442 aa14.59□□□□□ -0.07
CLK1-209ENST00000472679 BMP2KQ9NSY1 1161 aaPredicted RBP14.58□□□□□ -0.08
CLK1-209ENST00000472679 TIE1P35590 1138 aa14.57□□□□□ -0.08
CLK1-209ENST00000472679 TTLL13PA6NNM8 815 aa14.56□□□□□ -0.08
CLK1-209ENST00000472679 EFCAB3Q8N7B9 438 aa14.56□□□□□ -0.08
CLK1-209ENST00000472679 GTPBP6O43824 516 aaPredicted RBP14.55□□□□□ -0.08
CLK1-209ENST00000472679 HAP1P54257 671 aaPredicted RBP14.5□□□□□ -0.09
CLK1-209ENST00000472679 MFRPQ9BY79 579 aa14.5□□□□□ -0.09
CLK1-209ENST00000472679 SP7Q8TDD2 431 aaPredicted RBP14.49□□□□□ -0.09
CLK1-209ENST00000472679 ATN1P54259 1190 aaPredicted RBP14.47□□□□□ -0.09
CLK1-209ENST00000472679 ATMINO43313 823 aaPredicted RBP14.46□□□□□ -0.09
CLK1-209ENST00000472679 TRIM35Q9UPQ4 493 aa14.46□□□□□ -0.09
CLK1-209ENST00000472679 PHF8Q9UPP1 1060 aa14.45□□□□□ -0.1
CLK1-209ENST00000472679 GOLGA2Q08379 1002 aa14.44□□□□□ -0.1
CLK1-209ENST00000472679 ASTLQ6HA08 431 aaPredicted RBP14.44□□□□□ -0.1
CLK1-209ENST00000472679 SOX12O15370 315 aa14.43□□□□□ -0.1
CLK1-209ENST00000472679 FBXO22Q8NEZ5 403 aa14.42□□□□□ -0.1
CLK1-209ENST00000472679 TSHZ2Q9NRE2 1034 aa14.42□□□□□ -0.1
CLK1-209ENST00000472679 MKRN3Q13064 507 aaKnown RBP14.41□□□□□ -0.1
CLK1-209ENST00000472679 NLRP6P59044 892 aa14.39□□□□□ -0.11
CLK1-209ENST00000472679 DCBLD2Q96PD2 775 aa14.39□□□□□ -0.11
CLK1-209ENST00000472679 RYDENQ9NUL5 291 aaKnown RBP14.39□□□□□ -0.11
CLK1-209ENST00000472679 PELP1Q8IZL8 1130 aaKnown RBP14.37□□□□□ -0.11
CLK1-209ENST00000472679 MS4A4AQ96JQ5 239 aa14.37□□□□□ -0.11
CLK1-209ENST00000472679 PPP1R37O75864 691 aa14.35□□□□□ -0.11
CLK1-209ENST00000472679 POTEIP0CG38 1075 aa14.35□□□□□ -0.11
CLK1-209ENST00000472679 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.32□□□□□ -0.124e-13■■□□□ 11.9
CLK1-209ENST00000472679 ILDR1Q86SU0 546 aaPredicted RBP14.31□□□□□ -0.12
CLK1-209ENST00000472679 IRX5P78411 483 aaPredicted RBP14.27□□□□□ -0.13
CLK1-209ENST00000472679 KDM2AQ9Y2K7 1162 aa14.27□□□□□ -0.13
CLK1-209ENST00000472679 IER5LQ5T953 404 aa14.26□□□□□ -0.13
CLK1-209ENST00000472679 DPY19L2Q6NUT2 758 aa14.25□□□□□ -0.13
CLK1-209ENST00000472679 VSIG10Q8N0Z9 540 aa14.24□□□□□ -0.13
CLK1-209ENST00000472679 PDCD7Q8N8D1 485 aaKnown RBP14.24□□□□□ -0.13
CLK1-209ENST00000472679 CADPS2Q86UW7 1296 aa14.21□□□□□ -0.13
CLK1-209ENST00000472679 OCEL1Q9H607 264 aa14.21□□□□□ -0.13
CLK1-209ENST00000472679 COLQQ9Y215 455 aaPredicted RBP14.21□□□□□ -0.13
CLK1-209ENST00000472679 SLC39A7Q92504 469 aa14.19□□□□□ -0.14
CLK1-209ENST00000472679 POTEFA5A3E0 1075 aa14.18□□□□□ -0.14
CLK1-209ENST00000472679 C7P10643 843 aa14.16□□□□□ -0.14
CLK1-209ENST00000472679 PLCG2P16885 1265 aa14.16□□□□□ -0.14
CLK1-209ENST00000472679 METRNQ9UJH8 293 aa14.16□□□□□ -0.14
CLK1-209ENST00000472679 SEC24BO95487 1268 aa14.14□□□□□ -0.15
CLK1-209ENST00000472679 MICALL2Q8IY33 904 aa14.08□□□□□ -0.16
CLK1-209ENST00000472679 BOLA1Q9Y3E2 137 aa14.06□□□□□ -0.16
CLK1-209ENST00000472679 TMEM121BQ9BXQ6 578 aaPredicted RBP14.04□□□□□ -0.16
CLK1-209ENST00000472679 NCKAP5LQ9HCH0 1330 aa14.03□□□□□ -0.16
CLK1-209ENST00000472679 L3MBTL3Q96JM7 780 aaPredicted RBP14.01□□□□□ -0.17
CLK1-209ENST00000472679 CRISPLD2Q9H0B8 497 aa13.98□□□□□ -0.17
CLK1-209ENST00000472679 G3V3G9 751 aa13.97□□□□□ -0.17
CLK1-209ENST00000472679 PDE4AP27815 886 aa13.95□□□□□ -0.18
CLK1-209ENST00000472679 LARP6Q9BRS8 491 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms