RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	FAM163A	Q96GL9	167 aa	Predicted RBP	5.42	□□□□□ -1.54
TTC3-214	ENST00000472398	HAP1	P54257	671 aa	Predicted RBP	5.41	□□□□□ -1.54
TTC3-214	ENST00000472398	FBXO3	Q9UK99	471 aa		5.4	□□□□□ -1.55
TTC3-214	ENST00000472398	TMEM132A	Q24JP5	1023 aa		5.39	□□□□□ -1.55
TTC3-214	ENST00000472398	SPDYE2B	A6NHP3	402 aa		5.39	□□□□□ -1.55
TTC3-214	ENST00000472398	SPDYE6	P0CI01	402 aa		5.39	□□□□□ -1.55
TTC3-214	ENST00000472398	SPDYE2	Q495Y8	402 aa		5.39	□□□□□ -1.55
TTC3-214	ENST00000472398	SSUH2	Q9Y2M2	353 aa		5.39	□□□□□ -1.55
TTC3-214	ENST00000472398	C14orf37	Q86TY3	774 aa		5.38	□□□□□ -1.55
TTC3-214	ENST00000472398	LCE2D	Q5TA82	110 aa	Predicted RBP	5.36	□□□□□ -1.55
TTC3-214	ENST00000472398	TRIM26	Q12899	539 aa	Predicted RBP	5.35	□□□□□ -1.55
TTC3-214	ENST00000472398	OSCAR	Q8IYS5	282 aa		5.35	□□□□□ -1.55
TTC3-214	ENST00000472398	LOC105371045	A0A1W2PR82	267 aa		5.34	□□□□□ -1.55
TTC3-214	ENST00000472398	ZNF692	Q9BU19	519 aa	Predicted RBP	5.32	□□□□□ -1.56
TTC3-214	ENST00000472398	VASP	P50552	380 aa	Predicted RBP	5.31	□□□□□ -1.56
TTC3-214	ENST00000472398	KDM2A	Q9Y2K7	1162 aa		5.3	□□□□□ -1.56
TTC3-214	ENST00000472398	HRC	P23327	699 aa		5.3	□□□□□ -1.56
TTC3-214	ENST00000472398	FXR2	P51116	673 aa	Known RBP eCLIP	5.29	□□□□□ -1.56	3e-7	■■□□□ 13.3
TTC3-214	ENST00000472398	UBTF	P17480	764 aa	Known RBP	5.29	□□□□□ -1.56
TTC3-214	ENST00000472398	BCL11A	Q9H165	835 aa		5.28	□□□□□ -1.56
TTC3-214	ENST00000472398	STAG3	Q9UJ98	1225 aa		5.28	□□□□□ -1.56
TTC3-214	ENST00000472398	SUPT5H	O00267	1087 aa	Known RBP	5.28	□□□□□ -1.56
TTC3-214	ENST00000472398	POTEI	P0CG38	1075 aa		5.26	□□□□□ -1.57
TTC3-214	ENST00000472398	PABPN1	Q86U42	306 aa	Known RBP eCLIP	5.26	□□□□□ -1.57
TTC3-214	ENST00000472398	C19orf67	A6NJJ6	358 aa		5.25	□□□□□ -1.57
TTC3-214	ENST00000472398	VSIG10	Q8N0Z9	540 aa		5.25	□□□□□ -1.57
TTC3-214	ENST00000472398	IFNLR1	Q8IU57	520 aa	Predicted RBP	5.24	□□□□□ -1.57
TTC3-214	ENST00000472398	AKT1S1	Q96B36	256 aa		5.23	□□□□□ -1.57
TTC3-214	ENST00000472398	PDIA4	P13667	645 aa	Known RBP	5.21	□□□□□ -1.58
TTC3-214	ENST00000472398	CHMP4A	Q9BY43	222 aa		5.2	□□□□□ -1.58
TTC3-214	ENST00000472398	FAM9A	Q8IZU1	332 aa	Predicted RBP	5.19	□□□□□ -1.58
TTC3-214	ENST00000472398	DCBLD2	Q96PD2	775 aa		5.17	□□□□□ -1.58
TTC3-214	ENST00000472398	SPDYE1	Q8NFV5	336 aa	Predicted RBP	5.17	□□□□□ -1.58
TTC3-214	ENST00000472398	SPOCK2	Q92563	424 aa		5.17	□□□□□ -1.58
TTC3-214	ENST00000472398	REM2	Q8IYK8	340 aa	Predicted RBP	5.15	□□□□□ -1.58
TTC3-214	ENST00000472398	UBE2Q2	Q8WVN8	375 aa		5.15	□□□□□ -1.58
TTC3-214	ENST00000472398	KRTAP17-1	Q9BYP8	105 aa		5.15	□□□□□ -1.58
TTC3-214	ENST00000472398	IGSF3	O75054	1194 aa		5.14	□□□□□ -1.59
TTC3-214	ENST00000472398	PKD2	Q13563	968 aa		5.14	□□□□□ -1.59
TTC3-214	ENST00000472398	DHX37	Q8IY37	1157 aa	Known RBP	5.14	□□□□□ -1.59
TTC3-214	ENST00000472398	PLCD3	Q8N3E9	789 aa		5.13	□□□□□ -1.59
TTC3-214	ENST00000472398	ZBTB47	Q9UFB7	747 aa	Predicted RBP	5.13	□□□□□ -1.59
TTC3-214	ENST00000472398	MIER1	Q8N108	512 aa		5.13	□□□□□ -1.59
TTC3-214	ENST00000472398	DCAF8L2	P0C7V8	631 aa		5.12	□□□□□ -1.59
TTC3-214	ENST00000472398	CREBZF	Q9NS37	354 aa		5.09	□□□□□ -1.59
TTC3-214	ENST00000472398	MNX1	P50219	401 aa	Predicted RBP	5.09	□□□□□ -1.59
TTC3-214	ENST00000472398	PITPNM1	O00562	1244 aa		5.08	□□□□□ -1.6
TTC3-214	ENST00000472398	PDE4C	Q08493	712 aa		5.08	□□□□□ -1.6
TTC3-214	ENST00000472398	BTBD11	A6QL63	1104 aa		5.07	□□□□□ -1.6
TTC3-214	ENST00000472398	PRR29	P0C7W0	189 aa		5.07	□□□□□ -1.6
TTC3-214	ENST00000472398	CDK11B	P21127	795 aa	Known RBP	5.07	□□□□□ -1.6
TTC3-214	ENST00000472398	NUBP1	P53384	320 aa		5.07	□□□□□ -1.6
TTC3-214	ENST00000472398	TRIM41	Q8WV44	630 aa		5.07	□□□□□ -1.6
TTC3-214	ENST00000472398	CDK11A	Q9UQ88	783 aa	Predicted RBP	5.07	□□□□□ -1.6
TTC3-214	ENST00000472398	CLEC11A	Q9Y240	323 aa		5.05	□□□□□ -1.6
TTC3-214	ENST00000472398	BRD2	P25440	801 aa	Known RBP	5.03	□□□□□ -1.6
TTC3-214	ENST00000472398	ECM2	O94769	699 aa	Predicted RBP	5.03	□□□□□ -1.6
TTC3-214	ENST00000472398	GSE1	Q14687	1217 aa		5.03	□□□□□ -1.6
TTC3-214	ENST00000472398	CFAP44	Q96MT7	982 aa		5.02	□□□□□ -1.61
TTC3-214	ENST00000472398	KRTAP9-8	Q9BYQ0	159 aa		5.02	□□□□□ -1.61
TTC3-214	ENST00000472398	SCUBE2	Q9NQ36	999 aa		5.02	□□□□□ -1.61
TTC3-214	ENST00000472398	ANO8	Q9HCE9	1232 aa	Predicted RBP	5.01	□□□□□ -1.61
TTC3-214	ENST00000472398	CHRM1	P11229	460 aa	Predicted RBP	5.01	□□□□□ -1.61
TTC3-214	ENST00000472398	TAF7L	Q5H9L4	462 aa		5	□□□□□ -1.61
TTC3-214	ENST00000472398	KRTAP1-3	Q8IUG1	177 aa		5	□□□□□ -1.61
TTC3-214	ENST00000472398	SHROOM4	Q9ULL8	1493 aa		5	□□□□□ -1.61
TTC3-214	ENST00000472398	RGL2	O15211	777 aa		5	□□□□□ -1.61
TTC3-214	ENST00000472398	KRTAP4-8	Q9BYQ9	185 aa		5	□□□□□ -1.61
TTC3-214	ENST00000472398	NPM1	P06748	294 aa	Known RBP eCLIP	4.99	□□□□□ -1.61
TTC3-214	ENST00000472398	NECTIN2	Q92692	538 aa		4.99	□□□□□ -1.61
TTC3-214	ENST00000472398	HSP90B1	P14625	803 aa	Known RBP	4.98	□□□□□ -1.61
TTC3-214	ENST00000472398	BCL11B	Q9C0K0	894 aa	Predicted RBP	4.98	□□□□□ -1.61
TTC3-214	ENST00000472398	CIZ1	Q9ULV3	898 aa	Predicted RBP	4.98	□□□□□ -1.61
TTC3-214	ENST00000472398	FAM212A	Q96EL1	285 aa		4.98	□□□□□ -1.61
TTC3-214	ENST00000472398	DNAJC5	Q9H3Z4	198 aa		4.98	□□□□□ -1.61
TTC3-214	ENST00000472398	CCDC9	Q9Y3X0	531 aa	Known RBP	4.98	□□□□□ -1.61
TTC3-214	ENST00000472398	RASEF	Q8IZ41	740 aa		4.97	□□□□□ -1.61
TTC3-214	ENST00000472398	TSHZ2	Q9NRE2	1034 aa		4.97	□□□□□ -1.61
TTC3-214	ENST00000472398	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
TTC3-214	ENST00000472398	BBX	Q8WY36	941 aa	Predicted RBP	4.97	□□□□□ -1.61
TTC3-214	ENST00000472398	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	4.96	□□□□□ -1.61
TTC3-214	ENST00000472398	NBR1	Q14596	966 aa		4.96	□□□□□ -1.62
TTC3-214	ENST00000472398	RNF25	Q96BH1	459 aa	Predicted RBP	4.96	□□□□□ -1.62
TTC3-214	ENST00000472398	FARP1	Q9Y4F1	1045 aa	Predicted RBP	4.96	□□□□□ -1.62
TTC3-214	ENST00000472398	SGIP1	Q9BQI5	828 aa		4.95	□□□□□ -1.62
TTC3-214	ENST00000472398	RGS20	O76081	388 aa		4.95	□□□□□ -1.62
TTC3-214	ENST00000472398	DCAF8	Q5TAQ9	597 aa		4.95	□□□□□ -1.62
TTC3-214	ENST00000472398	PKNOX2	Q96KN3	472 aa		4.95	□□□□□ -1.62
TTC3-214	ENST00000472398	ARID3A	Q99856	593 aa		4.95	□□□□□ -1.62
TTC3-214	ENST00000472398	NEFL	P07196	543 aa		4.94	□□□□□ -1.62
TTC3-214	ENST00000472398	SUZ12	Q15022	739 aa	Known RBP	4.94	□□□□□ -1.62
TTC3-214	ENST00000472398	HS6ST3	Q8IZP7	471 aa		4.94	□□□□□ -1.62
TTC3-214	ENST00000472398	PRKAR2A	P13861	404 aa	Known RBP	4.94	□□□□□ -1.62
TTC3-214	ENST00000472398	CHADL	Q6NUI6	762 aa		4.94	□□□□□ -1.62
TTC3-214	ENST00000472398	C1orf115	Q9H7X2	142 aa		4.94	□□□□□ -1.62
TTC3-214	ENST00000472398	RIOK3	O14730	519 aa	Known RBP	4.93	□□□□□ -1.62
TTC3-214	ENST00000472398	PUS7	Q96PZ0	661 aa	Known RBP	4.93	□□□□□ -1.62
TTC3-214	ENST00000472398	FGD1	P98174	961 aa		4.92	□□□□□ -1.62
TTC3-214	ENST00000472398	ZNF428	Q96B54	188 aa		4.92	□□□□□ -1.62
TTC3-214	ENST00000472398	VGF	O15240	615 aa	Predicted RBP	4.9	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms