RNA–Protein interactions for RNA: ENST00000471694.1

CD47-204, Transcript of CD47 molecule, humanhuman

TSL 1 (best)

Gene CD47, Length 6,796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-204ENST00000471694 HDGFP51858 240 aaKnown RBP11.52□□□□□ -0.56
CD47-204ENST00000471694 MYH16Q9H6N6 1097 aa11.52□□□□□ -0.56
CD47-204ENST00000471694 DCAF8L1A6NGE4 600 aa11.51□□□□□ -0.57
CD47-204ENST00000471694 DIEXFQ68CQ4 756 aaKnown RBP11.5□□□□□ -0.57
CD47-204ENST00000471694 GOLGA2Q08379 1002 aa11.5□□□□□ -0.57
CD47-204ENST00000471694 TMX4Q9H1E5 349 aaPredicted RBP11.49□□□□□ -0.57
CD47-204ENST00000471694 MEX3CQ5U5Q3 659 aaKnown RBP11.49□□□□□ -0.57
CD47-204ENST00000471694 RGL3Q3MIN7 710 aa11.48□□□□□ -0.57
CD47-204ENST00000471694 NCBP3Q53F19 620 aaKnown RBP11.48□□□□□ -0.57
CD47-204ENST00000471694 UPF2Q9HAU5 1272 aaKnown RBP11.44□□□□□ -0.58
CD47-204ENST00000471694 SOX12O15370 315 aa11.44□□□□□ -0.58
CD47-204ENST00000471694 CSB-PGBD3P0DP91 1061 aa11.43□□□□□ -0.58
CD47-204ENST00000471694 ISY1Q9ULR0 285 aaKnown RBP11.43□□□□□ -0.58
CD47-204ENST00000471694 RRP7BPQ9NSQ0 103 aa11.42□□□□□ -0.58
CD47-204ENST00000471694 EIF4G2P78344 907 aaKnown RBP eCLIP11.42□□□□□ -0.58
CD47-204ENST00000471694 PAK3O75914 559 aaPredicted RBP11.41□□□□□ -0.58
CD47-204ENST00000471694 CFDP1Q9UEE9 299 aaPredicted RBP11.41□□□□□ -0.58
CD47-204ENST00000471694 TAOK2Q9UL54 1235 aa11.41□□□□□ -0.58
CD47-204ENST00000471694 LAS1LQ9Y4W2 734 aaKnown RBP11.4□□□□□ -0.58
CD47-204ENST00000471694 FAM9BQ8IZU0 186 aa11.4□□□□□ -0.58
CD47-204ENST00000471694 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.4□□□□□ -0.58
CD47-204ENST00000471694 ANP32BQ92688 251 aaKnown RBP11.4□□□□□ -0.58
CD47-204ENST00000471694 CFAP53Q96M91 514 aa11.4□□□□□ -0.58
CD47-204ENST00000471694 CLSTN1O94985 981 aa11.39□□□□□ -0.59
CD47-204ENST00000471694 KANK1Q14678 1352 aa11.38□□□□□ -0.59
CD47-204ENST00000471694 EIF4G1Q04637 1599 aaKnown RBP11.38□□□□□ -0.59
CD47-204ENST00000471694 G3V3G9 751 aa11.37□□□□□ -0.59
CD47-204ENST00000471694 DCAF8Q5TAQ9 597 aa11.37□□□□□ -0.59
CD47-204ENST00000471694 BAZ1BQ9UIG0 1483 aaKnown RBP11.37□□□□□ -0.59
CD47-204ENST00000471694 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.37□□□□□ -0.59
CD47-204ENST00000471694 GGT6Q6P531 493 aa11.36□□□□□ -0.59
CD47-204ENST00000471694 MSH5O43196 834 aa11.36□□□□□ -0.59
CD47-204ENST00000471694 ZNF330Q9Y3S2 320 aaPredicted RBP11.36□□□□□ -0.59
CD47-204ENST00000471694 KLHL34Q8N239 644 aa11.35□□□□□ -0.59
CD47-204ENST00000471694 RSF1Q96T23 1441 aaPredicted RBP11.35□□□□□ -0.59
CD47-204ENST00000471694 OS9Q13438 667 aaPredicted RBP11.33□□□□□ -0.6
CD47-204ENST00000471694 MAPK8IP3Q9UPT6 1336 aa11.32□□□□□ -0.6
CD47-204ENST00000471694 EID1Q9Y6B2 187 aa11.32□□□□□ -0.6
CD47-204ENST00000471694 ANP32AP39687 249 aaKnown RBP11.31□□□□□ -0.6
CD47-204ENST00000471694 SAFB2Q14151 953 aaKnown RBP eCLIP11.31□□□□□ -0.6
CD47-204ENST00000471694 CDCA8Q53HL2 280 aa11.3□□□□□ -0.6
CD47-204ENST00000471694 TNNT2P45379 298 aaPredicted RBP11.3□□□□□ -0.6
CD47-204ENST00000471694 SRPK2P78362 688 aaKnown RBP11.3□□□□□ -0.6
CD47-204ENST00000471694 STK26Q9P289 416 aa11.29□□□□□ -0.6
CD47-204ENST00000471694 CYB5RLQ6IPT4 315 aa11.29□□□□□ -0.6
CD47-204ENST00000471694 NUDCQ9Y266 331 aa11.28□□□□□ -0.6
CD47-204ENST00000471694 KNSTRNQ9Y448 316 aa11.28□□□□□ -0.6
CD47-204ENST00000471694 KRI1Q8N9T8 703 aaKnown RBP11.26□□□□□ -0.61
CD47-204ENST00000471694 HNRNPUQ00839 825 aaKnown RBP eCLIP11.25□□□□□ -0.61
CD47-204ENST00000471694 NAP1L2Q9ULW6 460 aaPredicted RBP11.25□□□□□ -0.61
CD47-204ENST00000471694 U2SURPO15042 1029 aaKnown RBP11.25□□□□□ -0.61
CD47-204ENST00000471694 CLIP1P30622 1438 aa11.24□□□□□ -0.61
CD47-204ENST00000471694 ZRSR1Q15695 479 aaKnown RBP11.24□□□□□ -0.61
CD47-204ENST00000471694 EVA1CP58658 441 aa11.24□□□□□ -0.61
CD47-204ENST00000471694 NEUROD2Q15784 382 aa11.24□□□□□ -0.61
CD47-204ENST00000471694 CASC1Q6TDU7 716 aa11.24□□□□□ -0.61
CD47-204ENST00000471694 FOXD1Q16676 465 aa11.23□□□□□ -0.61
CD47-204ENST00000471694 ZCCHC6Q5VYS8 1495 aaKnown RBP11.23□□□□□ -0.61
CD47-204ENST00000471694 DDX10Q13206 875 aaKnown RBP11.23□□□□□ -0.61
CD47-204ENST00000471694 RTF1Q92541 710 aaKnown RBP11.22□□□□□ -0.61
CD47-204ENST00000471694 TPRNQ4KMQ1 711 aa11.21□□□□□ -0.61
CD47-204ENST00000471694 FGD1P98174 961 aa11.21□□□□□ -0.61
CD47-204ENST00000471694 FTSJ3Q8IY81 847 aaKnown RBP11.21□□□□□ -0.61
CD47-204ENST00000471694 CCNB3Q8WWL7 1395 aa11.21□□□□□ -0.62
CD47-204ENST00000471694 NCLP19338 710 aaKnown RBP11.2□□□□□ -0.62
CD47-204ENST00000471694 PNNQ9H307 717 aaKnown RBP11.2□□□□□ -0.62
CD47-204ENST00000471694 CCDC180Q9P1Z9 1646 aa11.2□□□□□ -0.62
CD47-204ENST00000471694 MRS2Q9HD23 443 aa11.2□□□□□ -0.62
CD47-204ENST00000471694 GTF2E1P29083 439 aaPredicted RBP11.19□□□□□ -0.62
CD47-204ENST00000471694 CARD11Q9BXL7 1154 aa11.19□□□□□ -0.62
CD47-204ENST00000471694 CARMIL2Q6F5E8 1435 aa11.19□□□□□ -0.62
CD47-204ENST00000471694 CECR2Q9BXF3 1484 aa11.18□□□□□ -0.62
CD47-204ENST00000471694 NACADO15069 1562 aa11.18□□□□□ -0.62
CD47-204ENST00000471694 SF3B2Q13435 895 aaKnown RBP11.18□□□□□ -0.62
CD47-204ENST00000471694 KCNJ4P48050 445 aa11.17□□□□□ -0.62
CD47-204ENST00000471694 PRM3Q9NNZ6 103 aa11.17□□□□□ -0.62
CD47-204ENST00000471694 PDS5BQ9NTI5 1447 aa11.17□□□□□ -0.62
CD47-204ENST00000471694 KIF27Q86VH2 1401 aa11.17□□□□□ -0.62
CD47-204ENST00000471694 HDGFL2Q7Z4V5 671 aaPredicted RBP11.17□□□□□ -0.62
CD47-204ENST00000471694 OSCARQ8IYS5 282 aa11.17□□□□□ -0.62
CD47-204ENST00000471694 NGDNQ8NEJ9 315 aaKnown RBP11.15□□□□□ -0.62
CD47-204ENST00000471694 HIRIP3Q9BW71 556 aaPredicted RBP11.14□□□□□ -0.63
CD47-204ENST00000471694 TAF7LQ5H9L4 462 aa11.14□□□□□ -0.63
CD47-204ENST00000471694 ACIN1Q9UKV3 1341 aaKnown RBP11.14□□□□□ -0.63
CD47-204ENST00000471694 CWC22Q9HCG8 908 aaKnown RBP11.14□□□□□ -0.63
CD47-204ENST00000471694 CHMP3Q9Y3E7 222 aa11.13□□□□□ -0.63
CD47-204ENST00000471694 CCDC136Q96JN2 1154 aa11.12□□□□□ -0.63
CD47-204ENST00000471694 NUTM2FA1L443 756 aa11.11□□□□□ -0.63
CD47-204ENST00000471694 NUTM2DQ5VT03 806 aaPredicted RBP11.11□□□□□ -0.63
CD47-204ENST00000471694 FRAT2O75474 233 aaPredicted RBP11.1□□□□□ -0.63
CD47-204ENST00000471694 CC2D1BQ5T0F9 858 aaKnown RBP11.1□□□□□ -0.63
CD47-204ENST00000471694 EFCAB2Q5VUJ9 269 aa11.1□□□□□ -0.63
CD47-204ENST00000471694 PPP1R1BQ9UD71 204 aaPredicted RBP11.1□□□□□ -0.63
CD47-204ENST00000471694 SENP3-EIF4A1A0A087X0R7 540 aa11.09□□□□□ -0.63
CD47-204ENST00000471694 LTV1Q96GA3 475 aaPredicted RBP11.09□□□□□ -0.63
CD47-204ENST00000471694 WASHC2CQ9Y4E1 1318 aa11.09□□□□□ -0.63
CD47-204ENST00000471694 GORABQ5T7V8 394 aa11.08□□□□□ -0.64
CD47-204ENST00000471694 WRNQ14191 1432 aaPredicted RBP eCLIP11.08□□□□□ -0.64
CD47-204ENST00000471694 SYTL4Q96C24 671 aaPredicted RBP11.08□□□□□ -0.64
CD47-204ENST00000471694 MORC1Q86VD1 984 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms