RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 CCDC61Q9Y6R9 512 aa11.41□□□□□ -0.58
VPS13A-210ENST00000471439 CLCN6P51797 869 aa11.36□□□□□ -0.59
VPS13A-210ENST00000471439 GALR2O43603 387 aaPredicted RBP11.35□□□□□ -0.59
VPS13A-210ENST00000471439 FAM212AQ96EL1 285 aa11.34□□□□□ -0.59
VPS13A-210ENST00000471439 SPOCK2Q92563 424 aa11.33□□□□□ -0.6
VPS13A-210ENST00000471439 DCAF8Q5TAQ9 597 aa11.31□□□□□ -0.6
VPS13A-210ENST00000471439 MS4A3Q96HJ5 214 aa11.31□□□□□ -0.6
VPS13A-210ENST00000471439 KIF12Q96FN5 646 aa11.29□□□□□ -0.6
VPS13A-210ENST00000471439 MAP3K13O43283 966 aa11.28□□□□□ -0.6
VPS13A-210ENST00000471439 POTEIP0CG38 1075 aa11.26□□□□□ -0.61
VPS13A-210ENST00000471439 PYGBP11216 843 aa11.26□□□□□ -0.61
VPS13A-210ENST00000471439 TRPC6Q9Y210 931 aa11.25□□□□□ -0.61
VPS13A-210ENST00000471439 CIZ1Q9ULV3 898 aaPredicted RBP11.24□□□□□ -0.61
VPS13A-210ENST00000471439 GSE1Q14687 1217 aa11.2□□□□□ -0.62
VPS13A-210ENST00000471439 PCDHB13Q9Y5F0 798 aa11.19□□□□□ -0.62
VPS13A-210ENST00000471439 IFNL1Q8IU54 200 aa11.18□□□□□ -0.62
VPS13A-210ENST00000471439 DCBLD2Q96PD2 775 aa11.15□□□□□ -0.62
VPS13A-210ENST00000471439 PCDHB8Q9UN66 801 aa11.15□□□□□ -0.62
VPS13A-210ENST00000471439 PELP1Q8IZL8 1130 aaKnown RBP11.12□□□□□ -0.63
VPS13A-210ENST00000471439 BMP2KQ9NSY1 1161 aaPredicted RBP11.11□□□□□ -0.63
VPS13A-210ENST00000471439 ATMINO43313 823 aaPredicted RBP11.09□□□□□ -0.63
VPS13A-210ENST00000471439 SGIP1Q9BQI5 828 aa11.09□□□□□ -0.63
VPS13A-210ENST00000471439 ATN1P54259 1190 aaPredicted RBP11.08□□□□□ -0.64
VPS13A-210ENST00000471439 CHRM1P11229 460 aaPredicted RBP11.07□□□□□ -0.64
VPS13A-210ENST00000471439 ASTLQ6HA08 431 aaPredicted RBP11.07□□□□□ -0.64
VPS13A-210ENST00000471439 PKD2Q13563 968 aa11.06□□□□□ -0.64
VPS13A-210ENST00000471439 RNF25Q96BH1 459 aaPredicted RBP11.06□□□□□ -0.64
VPS13A-210ENST00000471439 TTLL13PA6NNM8 815 aa11.05□□□□□ -0.64
VPS13A-210ENST00000471439 TIE1P35590 1138 aa11.03□□□□□ -0.64
VPS13A-210ENST00000471439 TMEM106CQ9BVX2 250 aa11.01□□□□□ -0.65
VPS13A-210ENST00000471439 ZNF467Q7Z7K2 595 aaPredicted RBP11□□□□□ -0.65
VPS13A-210ENST00000471439 LHX8Q68G74 356 aa10.98□□□□□ -0.65
VPS13A-210ENST00000471439 TRIM35Q9UPQ4 493 aa10.98□□□□□ -0.65
VPS13A-210ENST00000471439 ECM2O94769 699 aaPredicted RBP10.97□□□□□ -0.65
VPS13A-210ENST00000471439 TRIM41Q8WV44 630 aa10.96□□□□□ -0.65
VPS13A-210ENST00000471439 PSEN1P49768 467 aa10.95□□□□□ -0.66
VPS13A-210ENST00000471439 METRNQ9UJH8 293 aa10.95□□□□□ -0.66
VPS13A-210ENST00000471439 RGL2O15211 777 aa10.94□□□□□ -0.66
VPS13A-210ENST00000471439 POTEFA5A3E0 1075 aa10.93□□□□□ -0.66
VPS13A-210ENST00000471439 POTEB2H3BUK9 544 aa10.92□□□□□ -0.66
VPS13A-210ENST00000471439 PDAP1Q13442 181 aaKnown RBP10.92□□□□□ -0.66
VPS13A-210ENST00000471439 RIOK3O14730 519 aaKnown RBP10.91□□□□□ -0.66
VPS13A-210ENST00000471439 SLC39A7Q92504 469 aa10.91□□□□□ -0.66
VPS13A-210ENST00000471439 COLQQ9Y215 455 aaPredicted RBP10.89□□□□□ -0.67
VPS13A-210ENST00000471439 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.87□□□□□ -0.67
VPS13A-210ENST00000471439 ZFP91Q96JP5 570 aaPredicted RBP10.87□□□□□ -0.67
VPS13A-210ENST00000471439 C7P10643 843 aa10.86□□□□□ -0.67
VPS13A-210ENST00000471439 CABP2Q9NPB3 220 aa10.86□□□□□ -0.67
VPS13A-210ENST00000471439 POTEJP0CG39 1038 aa10.84□□□□□ -0.67
VPS13A-210ENST00000471439 VGFO15240 615 aaPredicted RBP10.82□□□□□ -0.68
VPS13A-210ENST00000471439 IRX5P78411 483 aaPredicted RBP10.81□□□□□ -0.68
VPS13A-210ENST00000471439 IER5LQ5T953 404 aa10.81□□□□□ -0.68
VPS13A-210ENST00000471439 SEC24BO95487 1268 aa10.79□□□□□ -0.68
VPS13A-210ENST00000471439 GOLGA2Q08379 1002 aa10.78□□□□□ -0.68
VPS13A-210ENST00000471439 EFCAB3Q8N7B9 438 aa10.77□□□□□ -0.69
VPS13A-210ENST00000471439 BCL11BQ9C0K0 894 aaPredicted RBP10.77□□□□□ -0.69
VPS13A-210ENST00000471439 RTN4Q9NQC3 1192 aaKnown RBP10.77□□□□□ -0.69
VPS13A-210ENST00000471439 MKRN3Q13064 507 aaKnown RBP10.76□□□□□ -0.69
VPS13A-210ENST00000471439 PLCG2P16885 1265 aa10.75□□□□□ -0.69
VPS13A-210ENST00000471439 PDCD7Q8N8D1 485 aaKnown RBP10.75□□□□□ -0.69
VPS13A-210ENST00000471439 STK24Q9Y6E0 443 aa10.75□□□□□ -0.69
VPS13A-210ENST00000471439 STK25O00506 426 aa10.74□□□□□ -0.69
VPS13A-210ENST00000471439 OTUD5Q96G74 571 aa10.74□□□□□ -0.69
VPS13A-210ENST00000471439 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.73□□□□□ -0.694e-11■■■■□ 22.6
VPS13A-210ENST00000471439 DPY19L2Q6NUT2 758 aa10.71□□□□□ -0.69
VPS13A-210ENST00000471439 OCEL1Q9H607 264 aa10.71□□□□□ -0.69
VPS13A-210ENST00000471439 ILDR1Q86SU0 546 aaPredicted RBP10.69□□□□□ -0.7
VPS13A-210ENST00000471439 PHF8Q9UPP1 1060 aa10.68□□□□□ -0.7
VPS13A-210ENST00000471439 AMER1Q5JTC6 1135 aaPredicted RBP10.66□□□□□ -0.7
VPS13A-210ENST00000471439 MS4A4AQ96JQ5 239 aa10.66□□□□□ -0.7
VPS13A-210ENST00000471439 TAOK2Q9UL54 1235 aa10.66□□□□□ -0.7
VPS13A-210ENST00000471439 DCAF8L2P0C7V8 631 aa10.65□□□□□ -0.7
VPS13A-210ENST00000471439 CHGAP10645 457 aaKnown RBP10.65□□□□□ -0.7
VPS13A-210ENST00000471439 MAMSTRQ6ZN01 415 aa10.63□□□□□ -0.71
VPS13A-210ENST00000471439 HS6ST3Q8IZP7 471 aa10.63□□□□□ -0.71
VPS13A-210ENST00000471439 MFRPQ9BY79 579 aa10.63□□□□□ -0.71
VPS13A-210ENST00000471439 FBXO22Q8NEZ5 403 aa10.61□□□□□ -0.71
VPS13A-210ENST00000471439 SOX12O15370 315 aa10.59□□□□□ -0.71
VPS13A-210ENST00000471439 NKX1-1Q15270 411 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-210ENST00000471439 SCUBE2Q9NQ36 999 aa10.58□□□□□ -0.72
VPS13A-210ENST00000471439 DNAJC5Q9H3Z4 198 aa10.55□□□□□ -0.72
VPS13A-210ENST00000471439 NLRP6P59044 892 aa10.54□□□□□ -0.72
VPS13A-210ENST00000471439 BOLA1Q9Y3E2 137 aa10.54□□□□□ -0.72
VPS13A-210ENST00000471439 PPP1R37O75864 691 aa10.52□□□□□ -0.73
VPS13A-210ENST00000471439 SLAIN1Q8ND83 568 aa10.52□□□□□ -0.73
VPS13A-210ENST00000471439 L3MBTL3Q96JM7 780 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-210ENST00000471439 MICALL2Q8IY33 904 aa10.51□□□□□ -0.73
VPS13A-210ENST00000471439 C3orf67Q6ZVT6 689 aa10.5□□□□□ -0.73
VPS13A-210ENST00000471439 TMEM121BQ9BXQ6 578 aaPredicted RBP10.49□□□□□ -0.73
VPS13A-210ENST00000471439 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.49□□□□□ -0.73
VPS13A-210ENST00000471439 TMEM92Q6UXU6 159 aa10.46□□□□□ -0.73
VPS13A-210ENST00000471439 G3V3G9 751 aa10.45□□□□□ -0.74
VPS13A-210ENST00000471439 LCE2DQ5TA82 110 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-210ENST00000471439 GTPBP6O43824 516 aaPredicted RBP10.39□□□□□ -0.75
VPS13A-210ENST00000471439 FAM163AQ96GL9 167 aaPredicted RBP10.36□□□□□ -0.75
VPS13A-210ENST00000471439 C2orf72A6NCS6 295 aa10.31□□□□□ -0.76
VPS13A-210ENST00000471439 BBXQ8WY36 941 aaPredicted RBP10.31□□□□□ -0.76
VPS13A-210ENST00000471439 POTEMA6NI47 508 aa10.3□□□□□ -0.76
VPS13A-210ENST00000471439 ST18O60284 1047 aa10.3□□□□□ -0.76
VPS13A-210ENST00000471439 HOXB3P14651 431 aaPredicted RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms