RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 ASTLQ6HA08 431 aaPredicted RBP9.53□□□□□ -0.88
LINC02540-201ENST00000455554 TRPC6Q9Y210 931 aa9.53□□□□□ -0.88
LINC02540-201ENST00000455554 PLSCR2Q9NRY7 297 aa9.51□□□□□ -0.89
LINC02540-201ENST00000455554 CCDC61Q9Y6R9 512 aa9.51□□□□□ -0.89
LINC02540-201ENST00000455554 METRNQ9UJH8 293 aa9.5□□□□□ -0.89
LINC02540-201ENST00000455554 ATN1P54259 1190 aaPredicted RBP9.47□□□□□ -0.89
LINC02540-201ENST00000455554 KIF12Q96FN5 646 aa9.46□□□□□ -0.9
LINC02540-201ENST00000455554 POTEFA5A3E0 1075 aa9.45□□□□□ -0.9
LINC02540-201ENST00000455554 RASEFQ8IZ41 740 aa9.45□□□□□ -0.9
LINC02540-201ENST00000455554 POTEMA6NI47 508 aa9.42□□□□□ -0.9
LINC02540-201ENST00000455554 BMP2KQ9NSY1 1161 aaPredicted RBP9.42□□□□□ -0.9
LINC02540-201ENST00000455554 MAP3K13O43283 966 aa9.41□□□□□ -0.9
LINC02540-201ENST00000455554 LCE2DQ5TA82 110 aaPredicted RBP9.41□□□□□ -0.9
LINC02540-201ENST00000455554 SLC39A7Q92504 469 aa9.41□□□□□ -0.9
LINC02540-201ENST00000455554 C7P10643 843 aa9.4□□□□□ -0.9
LINC02540-201ENST00000455554 POTEGQ6S5H5 508 aa9.39□□□□□ -0.91
LINC02540-201ENST00000455554 MIER1Q8N108 512 aa9.38□□□□□ -0.91
LINC02540-201ENST00000455554 PLEKHG5O94827 1062 aa9.35□□□□□ -0.91
LINC02540-201ENST00000455554 COLQQ9Y215 455 aaPredicted RBP9.34□□□□□ -0.91
LINC02540-201ENST00000455554 TTLL13PA6NNM8 815 aa9.31□□□□□ -0.92
LINC02540-201ENST00000455554 TIE1P35590 1138 aa9.29□□□□□ -0.92
LINC02540-201ENST00000455554 NUBP1P53384 320 aa9.29□□□□□ -0.92
LINC02540-201ENST00000455554 FAM163AQ96GL9 167 aaPredicted RBP9.27□□□□□ -0.93
LINC02540-201ENST00000455554 PLCD3Q8N3E9 789 aa9.25□□□□□ -0.93
LINC02540-201ENST00000455554 MAMSTRQ6ZN01 415 aa9.24□□□□□ -0.93
LINC02540-201ENST00000455554 IFNL1Q8IU54 200 aa9.24□□□□□ -0.93
LINC02540-201ENST00000455554 TRIM35Q9UPQ4 493 aa9.24□□□□□ -0.93
LINC02540-201ENST00000455554 SCUBE2Q9NQ36 999 aa9.23□□□□□ -0.93
LINC02540-201ENST00000455554 PCDHB13Q9Y5F0 798 aa9.23□□□□□ -0.93
LINC02540-201ENST00000455554 FKBP8Q14318 412 aa9.19□□□□□ -0.94
LINC02540-201ENST00000455554 ZBTB47Q9UFB7 747 aaPredicted RBP9.19□□□□□ -0.94
LINC02540-201ENST00000455554 SEC24BO95487 1268 aa9.17□□□□□ -0.94
LINC02540-201ENST00000455554 SGIP1Q9BQI5 828 aa9.15□□□□□ -0.94
LINC02540-201ENST00000455554 TMEM106CQ9BVX2 250 aa9.15□□□□□ -0.94
LINC02540-201ENST00000455554 PYGBP11216 843 aa9.12□□□□□ -0.95
LINC02540-201ENST00000455554 IER5LQ5T953 404 aa9.12□□□□□ -0.95
LINC02540-201ENST00000455554 FAM212AQ96EL1 285 aa9.11□□□□□ -0.95
LINC02540-201ENST00000455554 IRX5P78411 483 aaPredicted RBP9.1□□□□□ -0.95
LINC02540-201ENST00000455554 PCDH10Q9P2E7 1040 aa9.1□□□□□ -0.95
LINC02540-201ENST00000455554 PCDHB8Q9UN66 801 aa9.09□□□□□ -0.95
LINC02540-201ENST00000455554 SLAIN1Q8ND83 568 aa9.08□□□□□ -0.96
LINC02540-201ENST00000455554 ST18O60284 1047 aa9.07□□□□□ -0.96
LINC02540-201ENST00000455554 DCAF8Q5TAQ9 597 aa9.06□□□□□ -0.96
LINC02540-201ENST00000455554 CDAN1Q8IWY9 1227 aa9.05□□□□□ -0.96
LINC02540-201ENST00000455554 PLCG2P16885 1265 aa9.04□□□□□ -0.96
LINC02540-201ENST00000455554 FBXO3Q9UK99 471 aa9.01□□□□□ -0.97
LINC02540-201ENST00000455554 OCEL1Q9H607 264 aa8.98□□□□□ -0.97
LINC02540-201ENST00000455554 PDCD7Q8N8D1 485 aaKnown RBP8.97□□□□□ -0.97
LINC02540-201ENST00000455554 VASPP50552 380 aaPredicted RBP8.93□□□□□ -0.98
LINC02540-201ENST00000455554 MARVELD3Q96A59 401 aa8.93□□□□□ -0.98
LINC02540-201ENST00000455554 KLHL34Q8N239 644 aa8.9□□□□□ -0.98
LINC02540-201ENST00000455554 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.89□□□□□ -0.99
LINC02540-201ENST00000455554 POTEB3A0JP26 581 aa8.88□□□□□ -0.99
LINC02540-201ENST00000455554 GSE1Q14687 1217 aa8.88□□□□□ -0.99
LINC02540-201ENST00000455554 DPY19L2Q6NUT2 758 aa8.88□□□□□ -0.99
LINC02540-201ENST00000455554 POTEBQ6S5H4 581 aa8.88□□□□□ -0.99
LINC02540-201ENST00000455554 ZNF467Q7Z7K2 595 aaPredicted RBP8.86□□□□□ -0.99
LINC02540-201ENST00000455554 PSEN1P49768 467 aa8.85□□□□□ -0.99
LINC02540-201ENST00000455554 SPNS2Q8IVW8 549 aa8.85□□□□□ -0.99
LINC02540-201ENST00000455554 MMRN1Q13201 1228 aa8.84□□□□□ -0.99
LINC02540-201ENST00000455554 CHRM1P11229 460 aaPredicted RBP8.83□□□□□ -1
LINC02540-201ENST00000455554 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.83□□□□□ -1
LINC02540-201ENST00000455554 MKRN3Q13064 507 aaKnown RBP8.82□□□□□ -1
LINC02540-201ENST00000455554 IFNLR1Q8IU57 520 aaPredicted RBP8.82□□□□□ -1
LINC02540-201ENST00000455554 TMEM121BQ9BXQ6 578 aaPredicted RBP8.82□□□□□ -1
LINC02540-201ENST00000455554 GOLGA2Q08379 1002 aa8.81□□□□□ -1
LINC02540-201ENST00000455554 ILDR1Q86SU0 546 aaPredicted RBP8.81□□□□□ -1
LINC02540-201ENST00000455554 SNPHO15079 494 aa8.79□□□□□ -1
LINC02540-201ENST00000455554 C3orf67Q6ZVT6 689 aa8.79□□□□□ -1
LINC02540-201ENST00000455554 KRTAP3-3Q9BYR6 98 aa8.79□□□□□ -1
LINC02540-201ENST00000455554 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
LINC02540-201ENST00000455554 CABP2Q9NPB3 220 aa8.77□□□□□ -1.01
LINC02540-201ENST00000455554 EMP3P54852 163 aa8.76□□□□□ -1.01
LINC02540-201ENST00000455554 L3MBTL3Q96JM7 780 aaPredicted RBP8.76□□□□□ -1.01
LINC02540-201ENST00000455554 PDAP1Q13442 181 aaKnown RBP8.75□□□□□ -1.01
LINC02540-201ENST00000455554 HS3ST6Q96QI5 342 aa8.75□□□□□ -1.01
LINC02540-201ENST00000455554 FAM205CA6NFA0 338 aa8.74□□□□□ -1.01
LINC02540-201ENST00000455554 HOXB3P14651 431 aaPredicted RBP8.74□□□□□ -1.01
LINC02540-201ENST00000455554 CIZ1Q9ULV3 898 aaPredicted RBP8.74□□□□□ -1.01
LINC02540-201ENST00000455554 SPOCK2Q92563 424 aa8.73□□□□□ -1.01
LINC02540-201ENST00000455554 BOLA1Q9Y3E2 137 aa8.7□□□□□ -1.02
LINC02540-201ENST00000455554 EFCAB3Q8N7B9 438 aa8.67□□□□□ -1.02
LINC02540-201ENST00000455554 TMEM92Q6UXU6 159 aa8.66□□□□□ -1.02
LINC02540-201ENST00000455554 G3V3G9 751 aa8.63□□□□□ -1.03
LINC02540-201ENST00000455554 RNF25Q96BH1 459 aaPredicted RBP8.62□□□□□ -1.03
LINC02540-201ENST00000455554 HOXB1P14653 301 aaPredicted RBP8.61□□□□□ -1.03
LINC02540-201ENST00000455554 MS4A4AQ96JQ5 239 aa8.61□□□□□ -1.03
LINC02540-201ENST00000455554 TRIM41Q8WV44 630 aa8.59□□□□□ -1.03
LINC02540-201ENST00000455554 MICALL2Q8IY33 904 aa8.57□□□□□ -1.04
LINC02540-201ENST00000455554 ZNF710Q8N1W2 664 aa8.55□□□□□ -1.04
LINC02540-201ENST00000455554 PHF8Q9UPP1 1060 aa8.55□□□□□ -1.04
LINC02540-201ENST00000455554 ERBB3P21860 1342 aa8.54□□□□□ -1.04
LINC02540-201ENST00000455554 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.54□□□□□ -1.04
LINC02540-201ENST00000455554 VARS2Q5ST30 1063 aaKnown RBP8.54□□□□□ -1.04
LINC02540-201ENST00000455554 ZFP91Q96JP5 570 aaPredicted RBP8.54□□□□□ -1.04
LINC02540-201ENST00000455554 DOK7Q18PE1 504 aa8.52□□□□□ -1.05
LINC02540-201ENST00000455554 GPR153Q6NV75 609 aa8.51□□□□□ -1.05
LINC02540-201ENST00000455554 KHSRPQ92945 711 aaKnown RBP eCLIP8.51□□□□□ -1.05
LINC02540-201ENST00000455554 RIOK3O14730 519 aaKnown RBP8.49□□□□□ -1.05
LINC02540-201ENST00000455554 RIMBP2O15034 1052 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 116.6 ms