RNA–Protein interactions for RNA: ENST00000445497.1

UBBP3-201, Transcript of ubiquitin B pseudogene 3, humanhuman

BASIC

Gene UBBP3, Length 241 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP3-201ENST00000445497 PKD2Q13563 968 aa4.11□□□□□ -1.75
UBBP3-201ENST00000445497 BRPF1P55201 1214 aaPredicted RBP4.1□□□□□ -1.75
UBBP3-201ENST00000445497 FAM9AQ8IZU1 332 aaPredicted RBP4.1□□□□□ -1.75
UBBP3-201ENST00000445497 KCTD17Q8N5Z5 321 aa4.1□□□□□ -1.75
UBBP3-201ENST00000445497 SLC4A2P04920 1241 aa4.09□□□□□ -1.75
UBBP3-201ENST00000445497 RAD21O60216 631 aa4.08□□□□□ -1.76
UBBP3-201ENST00000445497 CLSTN1O94985 981 aa4.08□□□□□ -1.76
UBBP3-201ENST00000445497 VASPP50552 380 aaPredicted RBP4.08□□□□□ -1.76
UBBP3-201ENST00000445497 DHX37Q8IY37 1157 aaKnown RBP4.07□□□□□ -1.76
UBBP3-201ENST00000445497 NEUROD2Q15784 382 aa4.06□□□□□ -1.76
UBBP3-201ENST00000445497 RSPH4AQ5TD94 716 aa4.06□□□□□ -1.76
UBBP3-201ENST00000445497 PSMD1Q99460 953 aa4.06□□□□□ -1.76
UBBP3-201ENST00000445497 CANXP27824 592 aaKnown RBP4.05□□□□□ -1.76
UBBP3-201ENST00000445497 NECTIN2Q92692 538 aa4.05□□□□□ -1.76
UBBP3-201ENST00000445497 E9PSI1 815 aa4.04□□□□□ -1.76
UBBP3-201ENST00000445497 ECM2O94769 699 aaPredicted RBP4.04□□□□□ -1.76
UBBP3-201ENST00000445497 TICAM2Q86XR7 235 aa4.04□□□□□ -1.76
UBBP3-201ENST00000445497 RGS22Q8NE09 1264 aa4.04□□□□□ -1.76
UBBP3-201ENST00000445497 PKNOX2Q96KN3 472 aa4.04□□□□□ -1.76
UBBP3-201ENST00000445497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.03□□□□□ -1.76
UBBP3-201ENST00000445497 FGD1P98174 961 aa4.03□□□□□ -1.76
UBBP3-201ENST00000445497 HNRNPUL2Q1KMD3 747 aaKnown RBP4.03□□□□□ -1.76
UBBP3-201ENST00000445497 TMCO4Q5TGY1 634 aa4.03□□□□□ -1.76
UBBP3-201ENST00000445497 CC2D2BQ6DHV5 1058 aa4.03□□□□□ -1.76
UBBP3-201ENST00000445497 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.03□□□□□ -1.76
UBBP3-201ENST00000445497 RBM25P49756 843 aaKnown RBP4.02□□□□□ -1.77
UBBP3-201ENST00000445497 P3H3Q8IVL6 736 aa4.02□□□□□ -1.77
UBBP3-201ENST00000445497 TRAIPQ9BWF2 469 aa4.02□□□□□ -1.77
UBBP3-201ENST00000445497 IFNLR1Q8IU57 520 aaPredicted RBP4.01□□□□□ -1.77
UBBP3-201ENST00000445497 ARID4BQ4LE39 1312 aaPredicted RBP4□□□□□ -1.77
UBBP3-201ENST00000445497 SETQ01105 290 aaPredicted RBP4□□□□□ -1.77
UBBP3-201ENST00000445497 LMOD2Q6P5Q4 547 aa4□□□□□ -1.77
UBBP3-201ENST00000445497 USP35Q9P2H5 1018 aa4□□□□□ -1.77
UBBP3-201ENST00000445497 APBB1O00213 710 aa3.99□□□□□ -1.77
UBBP3-201ENST00000445497 PTMSP20962 102 aa3.99□□□□□ -1.77
UBBP3-201ENST00000445497 MTMR7Q9Y216 660 aa3.99□□□□□ -1.77
UBBP3-201ENST00000445497 MFAP1P55081 439 aaKnown RBP3.98□□□□□ -1.77
UBBP3-201ENST00000445497 FAM177A1Q8N128 213 aaPredicted RBP3.98□□□□□ -1.77
UBBP3-201ENST00000445497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.98□□□□□ -1.77
UBBP3-201ENST00000445497 C1orf115Q9H7X2 142 aa3.98□□□□□ -1.77
UBBP3-201ENST00000445497 PATL2C9JE40 543 aaKnown RBP3.97□□□□□ -1.77
UBBP3-201ENST00000445497 PPM1GO15355 546 aaPredicted RBP3.97□□□□□ -1.77
UBBP3-201ENST00000445497 CENPBP07199 599 aaPredicted RBP3.97□□□□□ -1.77
UBBP3-201ENST00000445497 ZNF592Q92610 1267 aa3.97□□□□□ -1.77
UBBP3-201ENST00000445497 BCL11BQ9C0K0 894 aaPredicted RBP3.97□□□□□ -1.77
UBBP3-201ENST00000445497 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.96□□□□□ -1.78
UBBP3-201ENST00000445497 CCDC125Q86Z20 511 aa3.96□□□□□ -1.78
UBBP3-201ENST00000445497 NAP1L5Q96NT1 182 aaPredicted RBP3.96□□□□□ -1.78
UBBP3-201ENST00000445497 DCAF8L1A6NGE4 600 aa3.95□□□□□ -1.78
UBBP3-201ENST00000445497 CHGAP10645 457 aaKnown RBP3.95□□□□□ -1.78
UBBP3-201ENST00000445497 NCLP19338 710 aaKnown RBP3.95□□□□□ -1.78
UBBP3-201ENST00000445497 AEBP1Q8IUX7 1158 aa3.95□□□□□ -1.78
UBBP3-201ENST00000445497 SPOCK2Q92563 424 aa3.95□□□□□ -1.78
UBBP3-201ENST00000445497 ZEB1P37275 1124 aaPredicted RBP3.94□□□□□ -1.78
UBBP3-201ENST00000445497 FLIIQ13045 1269 aa3.94□□□□□ -1.78
UBBP3-201ENST00000445497 CERS3Q8IU89 383 aa3.94□□□□□ -1.78
UBBP3-201ENST00000445497 AMOTL2Q9Y2J4 779 aa3.94□□□□□ -1.78
UBBP3-201ENST00000445497 ARID3CA6NKF2 412 aa3.93□□□□□ -1.78
UBBP3-201ENST00000445497 HMGB1P1B2RPK0 211 aaPredicted RBP3.93□□□□□ -1.78
UBBP3-201ENST00000445497 TRHP20396 242 aaPredicted RBP3.93□□□□□ -1.78
UBBP3-201ENST00000445497 FOXD4L5Q5VV16 416 aaPredicted RBP3.93□□□□□ -1.78
UBBP3-201ENST00000445497 FOXD4L4Q8WXT5 416 aaPredicted RBP3.93□□□□□ -1.78
UBBP3-201ENST00000445497 ZNF692Q9BU19 519 aaPredicted RBP3.93□□□□□ -1.78
UBBP3-201ENST00000445497 CWC22Q9HCG8 908 aaKnown RBP3.93□□□□□ -1.78
UBBP3-201ENST00000445497 RGL2O15211 777 aa3.92□□□□□ -1.78
UBBP3-201ENST00000445497 CCDC82Q8N4S0 544 aa3.92□□□□□ -1.78
UBBP3-201ENST00000445497 FBXW7Q969H0 707 aa3.92□□□□□ -1.78
UBBP3-201ENST00000445497 GZF1Q9H116 711 aaPredicted RBP3.92□□□□□ -1.78
UBBP3-201ENST00000445497 RTL5Q5HYW3 569 aaPredicted RBP3.91□□□□□ -1.78
UBBP3-201ENST00000445497 TEX2Q8IWB9 1127 aa3.91□□□□□ -1.78
UBBP3-201ENST00000445497 ANKRD13AQ8IZ07 590 aa3.91□□□□□ -1.78
UBBP3-201ENST00000445497 PROM2Q8N271 834 aa3.91□□□□□ -1.78
UBBP3-201ENST00000445497 PLCD4Q9BRC7 762 aa3.91□□□□□ -1.78
UBBP3-201ENST00000445497 ATF5Q9Y2D1 282 aaPredicted RBP3.91□□□□□ -1.78
UBBP3-201ENST00000445497 PLEKHD1A6NEE1 506 aa3.9□□□□□ -1.79
UBBP3-201ENST00000445497 CCDC27Q2M243 656 aa3.9□□□□□ -1.79
UBBP3-201ENST00000445497 HS6ST3Q8IZP7 471 aa3.9□□□□□ -1.79
UBBP3-201ENST00000445497 ZC3H15Q8WU90 426 aaKnown RBP3.9□□□□□ -1.79
UBBP3-201ENST00000445497 ZFP91Q96JP5 570 aaPredicted RBP3.9□□□□□ -1.79
UBBP3-201ENST00000445497 WDR70Q9NW82 654 aa3.9□□□□□ -1.79
UBBP3-201ENST00000445497 MYT1LQ9UL68 1186 aa3.9□□□□□ -1.79
UBBP3-201ENST00000445497 CLSPNQ9HAW4 1339 aa3.9□□□□□ -1.79
UBBP3-201ENST00000445497 SPDYE4A6NLX3 237 aa3.89□□□□□ -1.79
UBBP3-201ENST00000445497 MAFGO15525 162 aa3.89□□□□□ -1.79
UBBP3-201ENST00000445497 NEFMP07197 916 aa3.89□□□□□ -1.79
UBBP3-201ENST00000445497 MCCP23508 829 aa3.89□□□□□ -1.79
UBBP3-201ENST00000445497 SLC24A3Q9HC58 644 aa3.89□□□□□ -1.79
UBBP3-201ENST00000445497 ZNF219Q9P2Y4 722 aaPredicted RBP3.89□□□□□ -1.79
UBBP3-201ENST00000445497 U3KPZ7 1027 aaPredicted RBP3.89□□□□□ -1.79
UBBP3-201ENST00000445497 A6NJR5 290 aa3.88□□□□□ -1.79
UBBP3-201ENST00000445497 GLIPR1L2Q4G1C9 344 aa3.88□□□□□ -1.79
UBBP3-201ENST00000445497 EXOC8Q8IYI6 725 aa3.88□□□□□ -1.79
UBBP3-201ENST00000445497 ZNF428Q96B54 188 aa3.88□□□□□ -1.79
UBBP3-201ENST00000445497 SERPINA10Q9UK55 444 aa3.88□□□□□ -1.79
UBBP3-201ENST00000445497 BRPF3Q9ULD4 1205 aa3.88□□□□□ -1.79
UBBP3-201ENST00000445497 HSP90AB4PQ58FF6 505 aa3.87□□□□□ -1.79
UBBP3-201ENST00000445497 ERICH6BQ5W0A0 696 aa3.87□□□□□ -1.79
UBBP3-201ENST00000445497 CCDC97Q96F63 343 aaPredicted RBP3.87□□□□□ -1.79
UBBP3-201ENST00000445497 RYDENQ9NUL5 291 aaKnown RBP3.87□□□□□ -1.79
UBBP3-201ENST00000445497 TRAK2O60296 914 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms