RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 GABBR2O75899 941 aa10.07□□□□□ -0.8
VPS41-207ENST00000439468 DCAF8Q5TAQ9 597 aa10.06□□□□□ -0.8
VPS41-207ENST00000439468 SPOCK2Q92563 424 aa10.05□□□□□ -0.8
VPS41-207ENST00000439468 CCDC61Q9Y6R9 512 aa10.02□□□□□ -0.81
VPS41-207ENST00000439468 CLCN6P51797 869 aa10.01□□□□□ -0.81
VPS41-207ENST00000439468 CIZ1Q9ULV3 898 aaPredicted RBP9.99□□□□□ -0.81
VPS41-207ENST00000439468 GSE1Q14687 1217 aa9.98□□□□□ -0.81
VPS41-207ENST00000439468 GALR2O43603 387 aaPredicted RBP9.97□□□□□ -0.81
VPS41-207ENST00000439468 MS4A3Q96HJ5 214 aa9.95□□□□□ -0.82
VPS41-207ENST00000439468 PYGBP11216 843 aa9.94□□□□□ -0.82
VPS41-207ENST00000439468 KIF12Q96FN5 646 aa9.94□□□□□ -0.82
VPS41-207ENST00000439468 DCBLD2Q96PD2 775 aa9.94□□□□□ -0.82
VPS41-207ENST00000439468 MAP3K13O43283 966 aa9.93□□□□□ -0.82
VPS41-207ENST00000439468 PCDHB13Q9Y5F0 798 aa9.91□□□□□ -0.82
VPS41-207ENST00000439468 SGIP1Q9BQI5 828 aa9.84□□□□□ -0.83
VPS41-207ENST00000439468 IFNL1Q8IU54 200 aa9.83□□□□□ -0.84
VPS41-207ENST00000439468 POTEIP0CG38 1075 aa9.82□□□□□ -0.84
VPS41-207ENST00000439468 LHX8Q68G74 356 aa9.81□□□□□ -0.84
VPS41-207ENST00000439468 TRPC6Q9Y210 931 aa9.81□□□□□ -0.84
VPS41-207ENST00000439468 PCDHB8Q9UN66 801 aa9.8□□□□□ -0.84
VPS41-207ENST00000439468 ZNF467Q7Z7K2 595 aaPredicted RBP9.79□□□□□ -0.84
VPS41-207ENST00000439468 TRIM41Q8WV44 630 aa9.79□□□□□ -0.84
VPS41-207ENST00000439468 CHRM1P11229 460 aaPredicted RBP9.78□□□□□ -0.84
VPS41-207ENST00000439468 TIE1P35590 1138 aa9.77□□□□□ -0.85
VPS41-207ENST00000439468 BMP2KQ9NSY1 1161 aaPredicted RBP9.77□□□□□ -0.85
VPS41-207ENST00000439468 ATMINO43313 823 aaPredicted RBP9.76□□□□□ -0.85
VPS41-207ENST00000439468 ASTLQ6HA08 431 aaPredicted RBP9.75□□□□□ -0.85
VPS41-207ENST00000439468 TMEM106CQ9BVX2 250 aa9.75□□□□□ -0.85
VPS41-207ENST00000439468 ATN1P54259 1190 aaPredicted RBP9.74□□□□□ -0.85
VPS41-207ENST00000439468 TTLL13PA6NNM8 815 aa9.73□□□□□ -0.85
VPS41-207ENST00000439468 ECM2O94769 699 aaPredicted RBP9.73□□□□□ -0.85
VPS41-207ENST00000439468 PELP1Q8IZL8 1130 aaKnown RBP9.71□□□□□ -0.86
VPS41-207ENST00000439468 TRIM35Q9UPQ4 493 aa9.7□□□□□ -0.86
VPS41-207ENST00000439468 PSEN1P49768 467 aa9.69□□□□□ -0.86
VPS41-207ENST00000439468 SLC39A7Q92504 469 aa9.69□□□□□ -0.86
VPS41-207ENST00000439468 PDAP1Q13442 181 aaKnown RBP9.68□□□□□ -0.86
VPS41-207ENST00000439468 PKD2Q13563 968 aa9.68□□□□□ -0.86
VPS41-207ENST00000439468 METRNQ9UJH8 293 aa9.68□□□□□ -0.86
VPS41-207ENST00000439468 RIOK3O14730 519 aaKnown RBP9.67□□□□□ -0.86
VPS41-207ENST00000439468 GOLGA2Q08379 1002 aa9.67□□□□□ -0.86
VPS41-207ENST00000439468 C7P10643 843 aa9.65□□□□□ -0.86
VPS41-207ENST00000439468 RNF25Q96BH1 459 aaPredicted RBP9.64□□□□□ -0.87
VPS41-207ENST00000439468 SEC24BO95487 1268 aa9.63□□□□□ -0.87
VPS41-207ENST00000439468 VGFO15240 615 aaPredicted RBP9.61□□□□□ -0.87
VPS41-207ENST00000439468 TAOK2Q9UL54 1235 aa9.61□□□□□ -0.87
VPS41-207ENST00000439468 RGL2O15211 777 aa9.6□□□□□ -0.87
VPS41-207ENST00000439468 MKRN3Q13064 507 aaKnown RBP9.6□□□□□ -0.87
VPS41-207ENST00000439468 CABP2Q9NPB3 220 aa9.6□□□□□ -0.87
VPS41-207ENST00000439468 IER5LQ5T953 404 aa9.59□□□□□ -0.87
VPS41-207ENST00000439468 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.58□□□□□ -0.88
VPS41-207ENST00000439468 ZFP91Q96JP5 570 aaPredicted RBP9.58□□□□□ -0.88
VPS41-207ENST00000439468 PLCG2P16885 1265 aa9.57□□□□□ -0.88
VPS41-207ENST00000439468 PLSCR2Q9NRY7 297 aa9.57□□□□□ -0.88
VPS41-207ENST00000439468 COLQQ9Y215 455 aaPredicted RBP9.54□□□□□ -0.88
VPS41-207ENST00000439468 STK25O00506 426 aa9.53□□□□□ -0.88
VPS41-207ENST00000439468 DCAF8L2P0C7V8 631 aa9.53□□□□□ -0.88
VPS41-207ENST00000439468 STK24Q9Y6E0 443 aa9.53□□□□□ -0.88
VPS41-207ENST00000439468 BCL11BQ9C0K0 894 aaPredicted RBP9.52□□□□□ -0.89
VPS41-207ENST00000439468 POTEFA5A3E0 1075 aa9.51□□□□□ -0.89
VPS41-207ENST00000439468 POTEB2H3BUK9 544 aa9.51□□□□□ -0.89
VPS41-207ENST00000439468 OCEL1Q9H607 264 aa9.51□□□□□ -0.89
VPS41-207ENST00000439468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.51□□□□□ -0.897e-10■■■■■ 44.2
VPS41-207ENST00000439468 IRX5P78411 483 aaPredicted RBP9.5□□□□□ -0.89
VPS41-207ENST00000439468 EFCAB3Q8N7B9 438 aa9.5□□□□□ -0.89
VPS41-207ENST00000439468 RTN4Q9NQC3 1192 aaKnown RBP9.5□□□□□ -0.89
VPS41-207ENST00000439468 AMER1Q5JTC6 1135 aaPredicted RBP9.48□□□□□ -0.89
VPS41-207ENST00000439468 SCUBE2Q9NQ36 999 aa9.45□□□□□ -0.9
VPS41-207ENST00000439468 CHGAP10645 457 aaKnown RBP9.44□□□□□ -0.9
VPS41-207ENST00000439468 MAMSTRQ6ZN01 415 aa9.44□□□□□ -0.9
VPS41-207ENST00000439468 G3V3G9 751 aa9.42□□□□□ -0.9
VPS41-207ENST00000439468 POTEJP0CG39 1038 aa9.42□□□□□ -0.9
VPS41-207ENST00000439468 PDCD7Q8N8D1 485 aaKnown RBP9.42□□□□□ -0.9
VPS41-207ENST00000439468 SOX12O15370 315 aa9.41□□□□□ -0.9
VPS41-207ENST00000439468 OTUD5Q96G74 571 aa9.41□□□□□ -0.9
VPS41-207ENST00000439468 PHF8Q9UPP1 1060 aa9.4□□□□□ -0.9
VPS41-207ENST00000439468 DPY19L2Q6NUT2 758 aa9.39□□□□□ -0.91
VPS41-207ENST00000439468 HS6ST3Q8IZP7 471 aa9.38□□□□□ -0.91
VPS41-207ENST00000439468 L3MBTL3Q96JM7 780 aaPredicted RBP9.38□□□□□ -0.91
VPS41-207ENST00000439468 NLRP6P59044 892 aa9.37□□□□□ -0.91
VPS41-207ENST00000439468 C3orf67Q6ZVT6 689 aa9.37□□□□□ -0.91
VPS41-207ENST00000439468 ILDR1Q86SU0 546 aaPredicted RBP9.35□□□□□ -0.91
VPS41-207ENST00000439468 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.34□□□□□ -0.91
VPS41-207ENST00000439468 BOLA1Q9Y3E2 137 aa9.34□□□□□ -0.91
VPS41-207ENST00000439468 SLAIN1Q8ND83 568 aa9.33□□□□□ -0.92
VPS41-207ENST00000439468 MFRPQ9BY79 579 aa9.33□□□□□ -0.92
VPS41-207ENST00000439468 MS4A4AQ96JQ5 239 aa9.32□□□□□ -0.92
VPS41-207ENST00000439468 FBXO22Q8NEZ5 403 aa9.3□□□□□ -0.92
VPS41-207ENST00000439468 POTEMA6NI47 508 aa9.28□□□□□ -0.92
VPS41-207ENST00000439468 MICALL2Q8IY33 904 aa9.27□□□□□ -0.93
VPS41-207ENST00000439468 NKX1-1Q15270 411 aaPredicted RBP9.23□□□□□ -0.93
VPS41-207ENST00000439468 POTEGQ6S5H5 508 aa9.23□□□□□ -0.93
VPS41-207ENST00000439468 RYDENQ9NUL5 291 aaKnown RBP9.22□□□□□ -0.93
VPS41-207ENST00000439468 TMEM121BQ9BXQ6 578 aaPredicted RBP9.21□□□□□ -0.94
VPS41-207ENST00000439468 PPP1R37O75864 691 aa9.2□□□□□ -0.94
VPS41-207ENST00000439468 DNAJC5Q9H3Z4 198 aa9.2□□□□□ -0.94
VPS41-207ENST00000439468 FAM163AQ96GL9 167 aaPredicted RBP9.19□□□□□ -0.94
VPS41-207ENST00000439468 SNPHO15079 494 aa9.15□□□□□ -0.94
VPS41-207ENST00000439468 BBXQ8WY36 941 aaPredicted RBP9.15□□□□□ -0.94
VPS41-207ENST00000439468 GTPBP6O43824 516 aaPredicted RBP9.13□□□□□ -0.95
VPS41-207ENST00000439468 TMEM92Q6UXU6 159 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms