RNA–Protein interactions for RNA: ENST00000414786.6

SHANK3-202, Transcript of SH3 and multiple ankyrin repeat domains 3, humanhuman

TSL 5

Gene SHANK3, Length 7,394 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3-202ENST00000414786 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.69■■□□□ 1.54
SHANK3-202ENST00000414786 DDX10Q13206 875 aaKnown RBP24.68■■□□□ 1.54
SHANK3-202ENST00000414786 HIRIP3Q9BW71 556 aaPredicted RBP24.68■■□□□ 1.54
SHANK3-202ENST00000414786 TMC1Q8TDI8 760 aa24.67■■□□□ 1.54
SHANK3-202ENST00000414786 CCDC136Q96JN2 1154 aa24.66■■□□□ 1.54
SHANK3-202ENST00000414786 ISY1Q9ULR0 285 aaKnown RBP24.64■■□□□ 1.53
SHANK3-202ENST00000414786 LAS1LQ9Y4W2 734 aaKnown RBP24.64■■□□□ 1.53
SHANK3-202ENST00000414786 NAP1L2Q9ULW6 460 aaPredicted RBP24.62■■□□□ 1.53
SHANK3-202ENST00000414786 ABCC9O60706 1549 aa24.62■■□□□ 1.53
SHANK3-202ENST00000414786 GLIPR1L2Q4G1C9 344 aa24.61■■□□□ 1.53
SHANK3-202ENST00000414786 PLCB2Q00722 1185 aa24.59■■□□□ 1.53
SHANK3-202ENST00000414786 ZRSR1Q15695 479 aaKnown RBP24.58■■□□□ 1.53
SHANK3-202ENST00000414786 PRM3Q9NNZ6 103 aa24.58■■□□□ 1.53
SHANK3-202ENST00000414786 ANO8Q9HCE9 1232 aaPredicted RBP24.56■■□□□ 1.52
SHANK3-202ENST00000414786 DNTTIP2Q5QJE6 756 aaKnown RBP24.53■■□□□ 1.52
SHANK3-202ENST00000414786 KCNH8Q96L42 1107 aa24.52■■□□□ 1.52
SHANK3-202ENST00000414786 PTMAP06454 111 aaKnown RBP24.52■■□□□ 1.52
SHANK3-202ENST00000414786 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.52■■□□□ 1.52
SHANK3-202ENST00000414786 TONSLQ96HA7 1378 aa24.51■■□□□ 1.51
SHANK3-202ENST00000414786 PDE4CQ08493 712 aa24.47■■□□□ 1.51
SHANK3-202ENST00000414786 SOX12O15370 315 aa24.46■■□□□ 1.51
SHANK3-202ENST00000414786 NEUROD2Q15784 382 aa24.45■■□□□ 1.5
SHANK3-202ENST00000414786 TRIM44Q96DX7 344 aaPredicted RBP24.44■■□□□ 1.5
SHANK3-202ENST00000414786 GOLGA2Q08379 1002 aa24.43■■□□□ 1.5
SHANK3-202ENST00000414786 RGL3Q3MIN7 710 aa24.39■■□□□ 1.5
SHANK3-202ENST00000414786 TNNT2P45379 298 aaPredicted RBP24.39■■□□□ 1.49
SHANK3-202ENST00000414786 ACIN1Q9UKV3 1341 aaKnown RBP24.37■■□□□ 1.49
SHANK3-202ENST00000414786 MRS2Q9HD23 443 aa24.37■■□□□ 1.49
SHANK3-202ENST00000414786 TRHP20396 242 aaPredicted RBP24.35■■□□□ 1.49
SHANK3-202ENST00000414786 OS9Q13438 667 aaPredicted RBP24.34■■□□□ 1.49
SHANK3-202ENST00000414786 FGD1P98174 961 aa24.33■■□□□ 1.49
SHANK3-202ENST00000414786 ERICH6BQ5W0A0 696 aa24.31■■□□□ 1.48
SHANK3-202ENST00000414786 RTN4Q9NQC3 1192 aaKnown RBP24.31■■□□□ 1.48
SHANK3-202ENST00000414786 FBXO3Q9UK99 471 aa24.3■■□□□ 1.48
SHANK3-202ENST00000414786 ZNF330Q9Y3S2 320 aaPredicted RBP24.24■■□□□ 1.47
SHANK3-202ENST00000414786 KCNJ4P48050 445 aa24.22■■□□□ 1.47
SHANK3-202ENST00000414786 FTSJ3Q8IY81 847 aaKnown RBP24.21■■□□□ 1.47
SHANK3-202ENST00000414786 MLECQ14165 292 aa24.19■■□□□ 1.46
SHANK3-202ENST00000414786 GOLGA6L22H0YM25 854 aa24.19■■□□□ 1.46
SHANK3-202ENST00000414786 CASC1Q6TDU7 716 aa24.19■■□□□ 1.46
SHANK3-202ENST00000414786 TSPY4P0CV99 314 aa24.18■■□□□ 1.46
SHANK3-202ENST00000414786 TSPY10P0CW01 314 aa24.18■■□□□ 1.46
SHANK3-202ENST00000414786 RRP7BPQ9NSQ0 103 aa24.15■■□□□ 1.46
SHANK3-202ENST00000414786 BECN1Q14457 450 aa24.14■■□□□ 1.46
SHANK3-202ENST00000414786 SPRYD3Q8NCJ5 442 aa24.14■■□□□ 1.46
SHANK3-202ENST00000414786 FRAT1Q92837 279 aaPredicted RBP24.13■■□□□ 1.45
SHANK3-202ENST00000414786 NAP1L5Q96NT1 182 aaPredicted RBP24.12■■□□□ 1.45
SHANK3-202ENST00000414786 CCDC9Q9Y3X0 531 aaKnown RBP24.1■■□□□ 1.45
SHANK3-202ENST00000414786 CHMP7Q8WUX9 453 aaPredicted RBP24.1■■□□□ 1.45
SHANK3-202ENST00000414786 ARID3AQ99856 593 aa24.1■■□□□ 1.45
SHANK3-202ENST00000414786 RGS3P49796 1198 aa24.08■■□□□ 1.44
SHANK3-202ENST00000414786 WWC1Q8IX03 1113 aa24.05■■□□□ 1.44
SHANK3-202ENST00000414786 U2SURPO15042 1029 aaKnown RBP24.05■■□□□ 1.44
SHANK3-202ENST00000414786 POGKQ9P215 609 aa24.05■■□□□ 1.44
SHANK3-202ENST00000414786 APBB1O00213 710 aa24.04■■□□□ 1.44
SHANK3-202ENST00000414786 SAFB2Q14151 953 aaKnown RBP eCLIP24.02■■□□□ 1.44
SHANK3-202ENST00000414786 KRI1Q8N9T8 703 aaKnown RBP23.99■■□□□ 1.43
SHANK3-202ENST00000414786 HSP90AB1P08238 724 aaKnown RBP23.99■■□□□ 1.43
SHANK3-202ENST00000414786 DRC7Q8IY82 874 aa23.98■■□□□ 1.43
SHANK3-202ENST00000414786 MAPK8IP3Q9UPT6 1336 aa23.98■■□□□ 1.43
SHANK3-202ENST00000414786 CFAP53Q96M91 514 aa23.98■■□□□ 1.43
SHANK3-202ENST00000414786 GNL2Q13823 731 aaKnown RBP23.96■■□□□ 1.43
SHANK3-202ENST00000414786 NOC3LQ8WTT2 800 aaKnown RBP23.95■■□□□ 1.42
SHANK3-202ENST00000414786 CSRNP3Q8WYN3 585 aa23.95■■□□□ 1.42
SHANK3-202ENST00000414786 CC2D1BQ5T0F9 858 aaKnown RBP23.94■■□□□ 1.42
SHANK3-202ENST00000414786 GOLGA6L6A8MZA4 724 aa23.93■■□□□ 1.42
SHANK3-202ENST00000414786 GOLGA6L4A6NEF3 574 aa23.93■■□□□ 1.42
SHANK3-202ENST00000414786 PAK3O75914 559 aaPredicted RBP23.92■■□□□ 1.42
SHANK3-202ENST00000414786 DDRGK1Q96HY6 314 aa23.9■■□□□ 1.42
SHANK3-202ENST00000414786 PNNQ9H307 717 aaKnown RBP23.9■■□□□ 1.42
SHANK3-202ENST00000414786 CREBRFQ8IUR6 639 aa23.9■■□□□ 1.42
SHANK3-202ENST00000414786 KNSTRNQ9Y448 316 aa23.89■■□□□ 1.42
SHANK3-202ENST00000414786 G3V3G9 751 aa23.87■■□□□ 1.41
SHANK3-202ENST00000414786 DCAF8Q5TAQ9 597 aa23.87■■□□□ 1.41
SHANK3-202ENST00000414786 CSB-PGBD3P0DP91 1061 aa23.83■■□□□ 1.4
SHANK3-202ENST00000414786 VPS53Q5VIR6 699 aa23.83■■□□□ 1.4
SHANK3-202ENST00000414786 CHMP3Q9Y3E7 222 aa23.81■■□□□ 1.4
SHANK3-202ENST00000414786 TMX4Q9H1E5 349 aaPredicted RBP23.8■■□□□ 1.4
SHANK3-202ENST00000414786 MTUS2Q5JR59 1369 aa23.78■■□□□ 1.4
SHANK3-202ENST00000414786 STK26Q9P289 416 aa23.76■■□□□ 1.39
SHANK3-202ENST00000414786 EIF4G2P78344 907 aaKnown RBP eCLIP23.76■■□□□ 1.39
SHANK3-202ENST00000414786 KIAA2012Q0VF49 1180 aa23.76■■□□□ 1.39
SHANK3-202ENST00000414786 SUPT16HQ9Y5B9 1047 aaKnown RBP23.75■■□□□ 1.39
SHANK3-202ENST00000414786 MIER1Q8N108 512 aa23.75■■□□□ 1.39
SHANK3-202ENST00000414786 A0A0U1RQG5 324 aaPredicted RBP23.74■■□□□ 1.39
SHANK3-202ENST00000414786 HSP90B1P14625 803 aaKnown RBP23.74■■□□□ 1.39
SHANK3-202ENST00000414786 KLHL34Q8N239 644 aa23.73■■□□□ 1.39
SHANK3-202ENST00000414786 MSH5O43196 834 aa23.72■■□□□ 1.39
SHANK3-202ENST00000414786 NUDCQ9Y266 331 aa23.71■■□□□ 1.39
SHANK3-202ENST00000414786 SRPK2P78362 688 aaKnown RBP23.7■■□□□ 1.38
SHANK3-202ENST00000414786 NRDCO43847 1150 aa23.7■■□□□ 1.38
SHANK3-202ENST00000414786 CARD11Q9BXL7 1154 aa23.69■■□□□ 1.38
SHANK3-202ENST00000414786 RAD21O60216 631 aa23.66■■□□□ 1.38
SHANK3-202ENST00000414786 B4GALNT3Q6L9W6 998 aa23.65■■□□□ 1.38
SHANK3-202ENST00000414786 CNKSR2Q8WXI2 1034 aa23.64■■□□□ 1.38
SHANK3-202ENST00000414786 ANP32EQ9BTT0 268 aa23.64■■□□□ 1.38
SHANK3-202ENST00000414786 RASSF8Q8NHQ8 419 aa23.63■■□□□ 1.37
SHANK3-202ENST00000414786 RTF1Q92541 710 aaKnown RBP23.63■■□□□ 1.37
SHANK3-202ENST00000414786 CHAF1AQ13111 956 aaPredicted RBP23.62■■□□□ 1.37
SHANK3-202ENST00000414786 PLEKHD1A6NEE1 506 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms