RNA–Protein interactions for RNA: ENST00000395788.3

C6orf48-208, Transcript of chromosome 6 open reading frame 48, humanhuman

APPRIS P1 TSL 2 BASIC

Gene C6orf48, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C6orf48-208ENST00000395788 C7P10643 843 aa12.07□□□□□ -0.48
C6orf48-208ENST00000395788 SLC39A7Q92504 469 aa12.07□□□□□ -0.48
C6orf48-208ENST00000395788 ATMINO43313 823 aaPredicted RBP12.04□□□□□ -0.48
C6orf48-208ENST00000395788 FAM163AQ96GL9 167 aaPredicted RBP12.01□□□□□ -0.49
C6orf48-208ENST00000395788 MS4A3Q96HJ5 214 aa12□□□□□ -0.49
C6orf48-208ENST00000395788 NPM1P06748 294 aaKnown RBP eCLIP11.99□□□□□ -0.49
C6orf48-208ENST00000395788 MNX1P50219 401 aaPredicted RBP11.97□□□□□ -0.49
C6orf48-208ENST00000395788 SCUBE2Q9NQ36 999 aa11.97□□□□□ -0.49
C6orf48-208ENST00000395788 ATN1P54259 1190 aaPredicted RBP11.86□□□□□ -0.51
C6orf48-208ENST00000395788 POTEFA5A3E0 1075 aa11.84□□□□□ -0.51
C6orf48-208ENST00000395788 CCDC180Q9P1Z9 1646 aa11.84□□□□□ -0.51
C6orf48-208ENST00000395788 CDAN1Q8IWY9 1227 aa11.83□□□□□ -0.52
C6orf48-208ENST00000395788 SPDYE4A6NLX3 237 aa11.76□□□□□ -0.53
C6orf48-208ENST00000395788 CCDC61Q9Y6R9 512 aa11.76□□□□□ -0.53
C6orf48-208ENST00000395788 BMP2KQ9NSY1 1161 aaPredicted RBP11.75□□□□□ -0.53
C6orf48-208ENST00000395788 KIF12Q96FN5 646 aa11.72□□□□□ -0.53
C6orf48-208ENST00000395788 TSPYL2Q9H2G4 693 aaPredicted RBP11.72□□□□□ -0.53
C6orf48-208ENST00000395788 TIE1P35590 1138 aa11.69□□□□□ -0.54
C6orf48-208ENST00000395788 TRPC6Q9Y210 931 aa11.69□□□□□ -0.54
C6orf48-208ENST00000395788 COLQQ9Y215 455 aaPredicted RBP11.67□□□□□ -0.54
C6orf48-208ENST00000395788 ST18O60284 1047 aa11.62□□□□□ -0.55
C6orf48-208ENST00000395788 SEC24BO95487 1268 aa11.62□□□□□ -0.55
C6orf48-208ENST00000395788 MMRN1Q13201 1228 aa11.62□□□□□ -0.55
C6orf48-208ENST00000395788 TTLL13PA6NNM8 815 aa11.59□□□□□ -0.55
C6orf48-208ENST00000395788 MAP3K13O43283 966 aa11.59□□□□□ -0.55
C6orf48-208ENST00000395788 IER5LQ5T953 404 aa11.57□□□□□ -0.56
C6orf48-208ENST00000395788 SPNS2Q8IVW8 549 aa11.57□□□□□ -0.56
C6orf48-208ENST00000395788 SLAIN1Q8ND83 568 aa11.55□□□□□ -0.56
C6orf48-208ENST00000395788 TRIM35Q9UPQ4 493 aa11.51□□□□□ -0.57
C6orf48-208ENST00000395788 TMEM121BQ9BXQ6 578 aaPredicted RBP11.48□□□□□ -0.57
C6orf48-208ENST00000395788 ZCCHC6Q5VYS8 1495 aaKnown RBP11.46□□□□□ -0.57
C6orf48-208ENST00000395788 CSRNP3Q8WYN3 585 aa11.46□□□□□ -0.57
C6orf48-208ENST00000395788 RASEFQ8IZ41 740 aa11.45□□□□□ -0.58
C6orf48-208ENST00000395788 SGIP1Q9BQI5 828 aa11.45□□□□□ -0.58
C6orf48-208ENST00000395788 PROM2Q8N271 834 aa11.43□□□□□ -0.58
C6orf48-208ENST00000395788 PCDHB13Q9Y5F0 798 aa11.38□□□□□ -0.59
C6orf48-208ENST00000395788 PLCG2P16885 1265 aa11.37□□□□□ -0.59
C6orf48-208ENST00000395788 SNPHO15079 494 aa11.35□□□□□ -0.59
C6orf48-208ENST00000395788 PLEKHG5O94827 1062 aa11.34□□□□□ -0.59
C6orf48-208ENST00000395788 IRX5P78411 483 aaPredicted RBP11.34□□□□□ -0.59
C6orf48-208ENST00000395788 MARVELD3Q96A59 401 aa11.33□□□□□ -0.6
C6orf48-208ENST00000395788 DCAF1Q9Y4B6 1507 aa11.32□□□□□ -0.6
C6orf48-208ENST00000395788 IFNL1Q8IU54 200 aa11.3□□□□□ -0.6
C6orf48-208ENST00000395788 TMEM106CQ9BVX2 250 aa11.3□□□□□ -0.6
C6orf48-208ENST00000395788 MIER1Q8N108 512 aa11.28□□□□□ -0.6
C6orf48-208ENST00000395788 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.26□□□□□ -0.61
C6orf48-208ENST00000395788 OCEL1Q9H607 264 aa11.24□□□□□ -0.61
C6orf48-208ENST00000395788 KRTAP3-3Q9BYR6 98 aa11.23□□□□□ -0.61
C6orf48-208ENST00000395788 KRTAP3-2Q9BYR7 98 aa11.23□□□□□ -0.61
C6orf48-208ENST00000395788 EMP3P54852 163 aa11.2□□□□□ -0.62
C6orf48-208ENST00000395788 NUBP1P53384 320 aa11.19□□□□□ -0.62
C6orf48-208ENST00000395788 MYO15BQ96JP2 1530 aa11.19□□□□□ -0.62
C6orf48-208ENST00000395788 POTEB3A0JP26 581 aa11.16□□□□□ -0.62
C6orf48-208ENST00000395788 POTEBQ6S5H4 581 aa11.16□□□□□ -0.62
C6orf48-208ENST00000395788 HS3ST6Q96QI5 342 aa11.16□□□□□ -0.62
C6orf48-208ENST00000395788 PLCD3Q8N3E9 789 aa11.11□□□□□ -0.63
C6orf48-208ENST00000395788 ZBTB47Q9UFB7 747 aaPredicted RBP11.11□□□□□ -0.63
C6orf48-208ENST00000395788 FAM205CA6NFA0 338 aa11.1□□□□□ -0.63
C6orf48-208ENST00000395788 FAM212AQ96EL1 285 aa11.1□□□□□ -0.63
C6orf48-208ENST00000395788 ABCC9O60706 1549 aa11.06□□□□□ -0.64
C6orf48-208ENST00000395788 C3orf67Q6ZVT6 689 aa11.06□□□□□ -0.64
C6orf48-208ENST00000395788 PDCD7Q8N8D1 485 aaKnown RBP11.06□□□□□ -0.64
C6orf48-208ENST00000395788 DCAF8L2P0C7V8 631 aa11.05□□□□□ -0.64
C6orf48-208ENST00000395788 NACADO15069 1562 aa11.03□□□□□ -0.64
C6orf48-208ENST00000395788 L3MBTL3Q96JM7 780 aaPredicted RBP11.01□□□□□ -0.65
C6orf48-208ENST00000395788 SHROOM4Q9ULL8 1493 aa11□□□□□ -0.65
C6orf48-208ENST00000395788 RNF166Q96A37 237 aaPredicted RBP10.96□□□□□ -0.65
C6orf48-208ENST00000395788 PCDHB8Q9UN66 801 aa10.96□□□□□ -0.65
C6orf48-208ENST00000395788 PYGBP11216 843 aa10.95□□□□□ -0.66
C6orf48-208ENST00000395788 MKRN3Q13064 507 aaKnown RBP10.9□□□□□ -0.66
C6orf48-208ENST00000395788 HOXB3P14651 431 aaPredicted RBP10.89□□□□□ -0.67
C6orf48-208ENST00000395788 HOXB1P14653 301 aaPredicted RBP10.88□□□□□ -0.67
C6orf48-208ENST00000395788 DCAF8Q5TAQ9 597 aa10.88□□□□□ -0.67
C6orf48-208ENST00000395788 RB1CC1Q8TDY2 1594 aa10.88□□□□□ -0.67
C6orf48-208ENST00000395788 GOLGA2Q08379 1002 aa10.87□□□□□ -0.67
C6orf48-208ENST00000395788 EHMT2Q96KQ7 1210 aa10.87□□□□□ -0.67
C6orf48-208ENST00000395788 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.86□□□□□ -0.67
C6orf48-208ENST00000395788 ILDR1Q86SU0 546 aaPredicted RBP10.85□□□□□ -0.67
C6orf48-208ENST00000395788 MYT1LQ9UL68 1186 aa10.85□□□□□ -0.67
C6orf48-208ENST00000395788 ERBB3P21860 1342 aa10.83□□□□□ -0.68
C6orf48-208ENST00000395788 SCRIBQ14160 1630 aa10.81□□□□□ -0.68
C6orf48-208ENST00000395788 ZNF467Q7Z7K2 595 aaPredicted RBP10.81□□□□□ -0.68
C6orf48-208ENST00000395788 ZNF710Q8N1W2 664 aa10.79□□□□□ -0.68
C6orf48-208ENST00000395788 DOK7Q18PE1 504 aa10.76□□□□□ -0.69
C6orf48-208ENST00000395788 VARS2Q5ST30 1063 aaKnown RBP10.75□□□□□ -0.69
C6orf48-208ENST00000395788 DPY19L2Q6NUT2 758 aa10.75□□□□□ -0.69
C6orf48-208ENST00000395788 PTGER2P43116 358 aa10.74□□□□□ -0.69
C6orf48-208ENST00000395788 BOLA1Q9Y3E2 137 aa10.74□□□□□ -0.69
C6orf48-208ENST00000395788 PSEN1P49768 467 aa10.72□□□□□ -0.69
C6orf48-208ENST00000395788 ZNF687Q8N1G0 1237 aa10.71□□□□□ -0.69
C6orf48-208ENST00000395788 G3V3G9 751 aa10.7□□□□□ -0.7
C6orf48-208ENST00000395788 CHRM1P11229 460 aaPredicted RBP10.69□□□□□ -0.7
C6orf48-208ENST00000395788 RIMBP2O15034 1052 aa10.68□□□□□ -0.7
C6orf48-208ENST00000395788 GSE1Q14687 1217 aa10.66□□□□□ -0.7
C6orf48-208ENST00000395788 ZSWIM6Q9HCJ5 1215 aa10.64□□□□□ -0.71
C6orf48-208ENST00000395788 UNC13AQ9UPW8 1703 aa10.62□□□□□ -0.71
C6orf48-208ENST00000395788 PDAP1Q13442 181 aaKnown RBP10.62□□□□□ -0.71
C6orf48-208ENST00000395788 SUPT5HO00267 1087 aaKnown RBP10.61□□□□□ -0.71
C6orf48-208ENST00000395788 CABP2Q9NPB3 220 aa10.59□□□□□ -0.71
C6orf48-208ENST00000395788 BICRAQ9NZM4 1560 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms