RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 CCDC136Q96JN2 1154 aa16.6■□□□□ 0.25
CHD3-203ENST00000380358 PRM3Q9NNZ6 103 aa16.59■□□□□ 0.25
CHD3-203ENST00000380358 PLCB2Q00722 1185 aa16.59■□□□□ 0.25
CHD3-203ENST00000380358 DDX10Q13206 875 aaKnown RBP16.59■□□□□ 0.25
CHD3-203ENST00000380358 HIRIP3Q9BW71 556 aaPredicted RBP16.59■□□□□ 0.25
CHD3-203ENST00000380358 TMC1Q8TDI8 760 aa16.58■□□□□ 0.25
CHD3-203ENST00000380358 ISY1Q9ULR0 285 aaKnown RBP16.58■□□□□ 0.25
CHD3-203ENST00000380358 NAP1L2Q9ULW6 460 aaPredicted RBP16.58■□□□□ 0.25
CHD3-203ENST00000380358 ANO8Q9HCE9 1232 aaPredicted RBP16.58■□□□□ 0.24
CHD3-203ENST00000380358 ARID4BQ4LE39 1312 aaPredicted RBP16.58■□□□□ 0.24
CHD3-203ENST00000380358 ZRSR1Q15695 479 aaKnown RBP16.57■□□□□ 0.24
CHD3-203ENST00000380358 LAS1LQ9Y4W2 734 aaKnown RBP16.57■□□□□ 0.24
CHD3-203ENST00000380358 DNTTIP2Q5QJE6 756 aaKnown RBP16.56■□□□□ 0.24
CHD3-203ENST00000380358 PPP1R15AO75807 674 aaPredicted RBP16.56■□□□□ 0.24
CHD3-203ENST00000380358 PTMAP06454 111 aaKnown RBP16.54■□□□□ 0.24
CHD3-203ENST00000380358 PDE4CQ08493 712 aa16.51■□□□□ 0.23
CHD3-203ENST00000380358 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.5■□□□□ 0.23
CHD3-203ENST00000380358 TRIM44Q96DX7 344 aaPredicted RBP16.5■□□□□ 0.23
CHD3-203ENST00000380358 TONSLQ96HA7 1378 aa16.44■□□□□ 0.22
CHD3-203ENST00000380358 RTN4Q9NQC3 1192 aaKnown RBP16.44■□□□□ 0.22
CHD3-203ENST00000380358 NEUROD2Q15784 382 aa16.43■□□□□ 0.22
CHD3-203ENST00000380358 GOLGA2Q08379 1002 aa16.43■□□□□ 0.22
CHD3-203ENST00000380358 SOX12O15370 315 aa16.43■□□□□ 0.22
CHD3-203ENST00000380358 FBXO3Q9UK99 471 aa16.42■□□□□ 0.22
CHD3-203ENST00000380358 KCNH8Q96L42 1107 aa16.42■□□□□ 0.22
CHD3-203ENST00000380358 ERICH6BQ5W0A0 696 aa16.41■□□□□ 0.22
CHD3-203ENST00000380358 ABCC9O60706 1549 aa16.38■□□□□ 0.21
CHD3-203ENST00000380358 TNNT2P45379 298 aaPredicted RBP16.38■□□□□ 0.21
CHD3-203ENST00000380358 FGD1P98174 961 aa16.38■□□□□ 0.21
CHD3-203ENST00000380358 MRS2Q9HD23 443 aa16.37■□□□□ 0.21
CHD3-203ENST00000380358 RGL3Q3MIN7 710 aa16.37■□□□□ 0.21
CHD3-203ENST00000380358 OS9Q13438 667 aaPredicted RBP16.36■□□□□ 0.21
CHD3-203ENST00000380358 ACIN1Q9UKV3 1341 aaKnown RBP16.36■□□□□ 0.21
CHD3-203ENST00000380358 KCNJ4P48050 445 aa16.3■□□□□ 0.2
CHD3-203ENST00000380358 NAP1L5Q96NT1 182 aaPredicted RBP16.3■□□□□ 0.2
CHD3-203ENST00000380358 GOLGA6L22H0YM25 854 aa16.29■□□□□ 0.2
CHD3-203ENST00000380358 ARID3AQ99856 593 aa16.29■□□□□ 0.2
CHD3-203ENST00000380358 TRHP20396 242 aaPredicted RBP16.29■□□□□ 0.2
CHD3-203ENST00000380358 ZNF330Q9Y3S2 320 aaPredicted RBP16.29■□□□□ 0.2
CHD3-203ENST00000380358 FTSJ3Q8IY81 847 aaKnown RBP16.28■□□□□ 0.2
CHD3-203ENST00000380358 SPRYD3Q8NCJ5 442 aa16.27■□□□□ 0.2
CHD3-203ENST00000380358 CASC1Q6TDU7 716 aa16.27■□□□□ 0.2
CHD3-203ENST00000380358 BECN1Q14457 450 aa16.26■□□□□ 0.19
CHD3-203ENST00000380358 WWC1Q8IX03 1113 aa16.23■□□□□ 0.19
CHD3-203ENST00000380358 FRAT1Q92837 279 aaPredicted RBP16.23■□□□□ 0.19
CHD3-203ENST00000380358 RGS3P49796 1198 aa16.21■□□□□ 0.18
CHD3-203ENST00000380358 MLECQ14165 292 aa16.2■□□□□ 0.18
CHD3-203ENST00000380358 TSPY4P0CV99 314 aa16.2■□□□□ 0.18
CHD3-203ENST00000380358 TSPY10P0CW01 314 aa16.2■□□□□ 0.18
CHD3-203ENST00000380358 RRP7BPQ9NSQ0 103 aa16.19■□□□□ 0.18
CHD3-203ENST00000380358 KRI1Q8N9T8 703 aaKnown RBP16.17■□□□□ 0.18
CHD3-203ENST00000380358 APBB1O00213 710 aa16.17■□□□□ 0.18
CHD3-203ENST00000380358 DRC7Q8IY82 874 aa16.17■□□□□ 0.18
CHD3-203ENST00000380358 CCDC9Q9Y3X0 531 aaKnown RBP16.17■□□□□ 0.18
CHD3-203ENST00000380358 NOC3LQ8WTT2 800 aaKnown RBP16.16■□□□□ 0.18
CHD3-203ENST00000380358 HSP90AB1P08238 724 aaKnown RBP16.16■□□□□ 0.18
CHD3-203ENST00000380358 U2SURPO15042 1029 aaKnown RBP16.15■□□□□ 0.18
CHD3-203ENST00000380358 GNL2Q13823 731 aaKnown RBP16.13■□□□□ 0.17
CHD3-203ENST00000380358 POGKQ9P215 609 aa16.12■□□□□ 0.17
CHD3-203ENST00000380358 GOLGA6L6A8MZA4 724 aa16.12■□□□□ 0.17
CHD3-203ENST00000380358 SAFB2Q14151 953 aaKnown RBP eCLIP16.12■□□□□ 0.17
CHD3-203ENST00000380358 GOLGA6L4A6NEF3 574 aa16.11■□□□□ 0.17
CHD3-203ENST00000380358 PNNQ9H307 717 aaKnown RBP16.11■□□□□ 0.17
CHD3-203ENST00000380358 CREBRFQ8IUR6 639 aa16.11■□□□□ 0.17
CHD3-203ENST00000380358 CHMP7Q8WUX9 453 aaPredicted RBP16.1■□□□□ 0.17
CHD3-203ENST00000380358 MAPK8IP3Q9UPT6 1336 aa16.1■□□□□ 0.17
CHD3-203ENST00000380358 DDRGK1Q96HY6 314 aa16.1■□□□□ 0.17
CHD3-203ENST00000380358 CFAP53Q96M91 514 aa16.09■□□□□ 0.17
CHD3-203ENST00000380358 CC2D1BQ5T0F9 858 aaKnown RBP16.08■□□□□ 0.16
CHD3-203ENST00000380358 PAK3O75914 559 aaPredicted RBP16.05■□□□□ 0.16
CHD3-203ENST00000380358 G3V3G9 751 aa16.04■□□□□ 0.16
CHD3-203ENST00000380358 DCAF8Q5TAQ9 597 aa16.04■□□□□ 0.16
CHD3-203ENST00000380358 VPS53Q5VIR6 699 aa16.04■□□□□ 0.16
CHD3-203ENST00000380358 KNSTRNQ9Y448 316 aa16.03■□□□□ 0.16
CHD3-203ENST00000380358 A0A0U1RQG5 324 aaPredicted RBP16.02■□□□□ 0.16
CHD3-203ENST00000380358 KIAA2012Q0VF49 1180 aa16.02■□□□□ 0.15
CHD3-203ENST00000380358 CSRNP3Q8WYN3 585 aa16.01■□□□□ 0.15
CHD3-203ENST00000380358 CHMP3Q9Y3E7 222 aa16.01■□□□□ 0.15
CHD3-203ENST00000380358 TMX4Q9H1E5 349 aaPredicted RBP15.98■□□□□ 0.15
CHD3-203ENST00000380358 SUPT16HQ9Y5B9 1047 aaKnown RBP15.98■□□□□ 0.15
CHD3-203ENST00000380358 HSP90B1P14625 803 aaKnown RBP15.98■□□□□ 0.15
CHD3-203ENST00000380358 CSB-PGBD3P0DP91 1061 aa15.98■□□□□ 0.15
CHD3-203ENST00000380358 NRDCO43847 1150 aa15.97■□□□□ 0.15
CHD3-203ENST00000380358 MIER1Q8N108 512 aa15.96■□□□□ 0.15
CHD3-203ENST00000380358 EIF4G2P78344 907 aaKnown RBP eCLIP15.94■□□□□ 0.144e-9■■■□□ 16.7
CHD3-203ENST00000380358 PATL2C9JE40 543 aaKnown RBP15.94■□□□□ 0.14
CHD3-203ENST00000380358 STK26Q9P289 416 aa15.94■□□□□ 0.14
CHD3-203ENST00000380358 CHAF1AQ13111 956 aaPredicted RBP15.93■□□□□ 0.14
CHD3-203ENST00000380358 KLHL34Q8N239 644 aa15.93■□□□□ 0.14
CHD3-203ENST00000380358 ANP32EQ9BTT0 268 aa15.93■□□□□ 0.14
CHD3-203ENST00000380358 CNKSR2Q8WXI2 1034 aa15.93■□□□□ 0.14
CHD3-203ENST00000380358 MSH5O43196 834 aa15.93■□□□□ 0.14
CHD3-203ENST00000380358 MTUS2Q5JR59 1369 aa15.92■□□□□ 0.14
CHD3-203ENST00000380358 RAD21O60216 631 aa15.91■□□□□ 0.14
CHD3-203ENST00000380358 B4GALNT3Q6L9W6 998 aa15.91■□□□□ 0.14
CHD3-203ENST00000380358 NUDCQ9Y266 331 aa15.91■□□□□ 0.14
CHD3-203ENST00000380358 RASSF8Q8NHQ8 419 aa15.9■□□□□ 0.14
CHD3-203ENST00000380358 GZF1Q9H116 711 aaPredicted RBP15.9■□□□□ 0.14
CHD3-203ENST00000380358 SRPK2P78362 688 aaKnown RBP15.9■□□□□ 0.14
CHD3-203ENST00000380358 NOL8Q76FK4 1167 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms