RNA–Protein interactions for RNA: ENST00000375663.7

VARS-215, Transcript of valyl-tRNA synthetase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-215ENST00000375663 WIZO95785 1651 aa22.78■■□□□ 1.24
VARS-215ENST00000375663 SALL2Q9Y467 1007 aaPredicted RBP22.78■■□□□ 1.24
VARS-215ENST00000375663 NBR1Q14596 966 aa22.76■■□□□ 1.23
VARS-215ENST00000375663 KANK4Q5T7N3 995 aaPredicted RBP22.76■■□□□ 1.23
VARS-215ENST00000375663 ZBTB47Q9UFB7 747 aaPredicted RBP22.72■■□□□ 1.23
VARS-215ENST00000375663 CANXP27824 592 aaKnown RBP22.68■■□□□ 1.22
VARS-215ENST00000375663 TIMELESSQ9UNS1 1208 aa22.63■■□□□ 1.21
VARS-215ENST00000375663 TOP2AP11388 1531 aaKnown RBP22.6■■□□□ 1.21
VARS-215ENST00000375663 KDM2AQ9Y2K7 1162 aa22.6■■□□□ 1.21
VARS-215ENST00000375663 CCER2I3L3R5 266 aa22.59■■□□□ 1.21
VARS-215ENST00000375663 RUSC2Q8N2Y8 1516 aa22.59■■□□□ 1.21
VARS-215ENST00000375663 SETD5Q9C0A6 1442 aa22.58■■□□□ 1.2
VARS-215ENST00000375663 TSHZ2Q9NRE2 1034 aa22.57■■□□□ 1.2
VARS-215ENST00000375663 PPP4R2Q9NY27 417 aa22.56■■□□□ 1.2
VARS-215ENST00000375663 RBM19Q9Y4C8 960 aaKnown RBP22.56■■□□□ 1.2
VARS-215ENST00000375663 RAB3GAP2Q9H2M9 1393 aa22.55■■□□□ 1.2
VARS-215ENST00000375663 SENP3-EIF4A1A0A087X0R7 540 aa22.54■■□□□ 1.2
VARS-215ENST00000375663 FHAD1B1AJZ9 1412 aa22.53■■□□□ 1.2
VARS-215ENST00000375663 CARMIL1Q5VZK9 1371 aa22.51■■□□□ 1.19
VARS-215ENST00000375663 DHX57Q6P158 1386 aaKnown RBP22.5■■□□□ 1.19
VARS-215ENST00000375663 TSPY4P0CV99 314 aa22.5■■□□□ 1.19
VARS-215ENST00000375663 TSPY10P0CW01 314 aa22.5■■□□□ 1.19
VARS-215ENST00000375663 RAPGEF2Q9Y4G8 1499 aa22.48■■□□□ 1.19
VARS-215ENST00000375663 CUX2O14529 1486 aa22.47■■□□□ 1.19
VARS-215ENST00000375663 B4GALNT3Q6L9W6 998 aa22.46■■□□□ 1.19
VARS-215ENST00000375663 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.44■■□□□ 1.187e-8■■□□□ 14.5
VARS-215ENST00000375663 KCNH8Q96L42 1107 aa22.42■■□□□ 1.18
VARS-215ENST00000375663 PPP1R15AO75807 674 aaPredicted RBP22.41■■□□□ 1.18
VARS-215ENST00000375663 EIF5BO60841 1220 aaKnown RBP22.4■■□□□ 1.18
VARS-215ENST00000375663 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.39■■□□□ 1.18
VARS-215ENST00000375663 WDR43Q15061 677 aaKnown RBP eCLIP22.38■■□□□ 1.179e-6■■■□□ 15.6
VARS-215ENST00000375663 BCL11AQ9H165 835 aa22.37■■□□□ 1.17
VARS-215ENST00000375663 HSPA5P11021 654 aaKnown RBP22.36■■□□□ 1.17
VARS-215ENST00000375663 UPF2Q9HAU5 1272 aaKnown RBP22.33■■□□□ 1.17
VARS-215ENST00000375663 ARHGAP35Q9NRY4 1499 aa22.33■■□□□ 1.17
VARS-215ENST00000375663 NOP58Q9Y2X3 529 aaKnown RBP22.32■■□□□ 1.16
VARS-215ENST00000375663 CARD11Q9BXL7 1154 aa22.32■■□□□ 1.16
VARS-215ENST00000375663 CFDP1Q9UEE9 299 aaPredicted RBP22.31■■□□□ 1.16
VARS-215ENST00000375663 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
VARS-215ENST00000375663 NEFMP07197 916 aa22.29■■□□□ 1.16
VARS-215ENST00000375663 RGL3Q3MIN7 710 aa22.28■■□□□ 1.16
VARS-215ENST00000375663 SMARCA2P51531 1590 aa22.27■■□□□ 1.16
VARS-215ENST00000375663 CHMP7Q8WUX9 453 aaPredicted RBP22.26■■□□□ 1.15
VARS-215ENST00000375663 CHGAP10645 457 aaKnown RBP22.25■■□□□ 1.15
VARS-215ENST00000375663 ERICH6BQ5W0A0 696 aa22.24■■□□□ 1.15
VARS-215ENST00000375663 DDRGK1Q96HY6 314 aa22.23■■□□□ 1.15
VARS-215ENST00000375663 PLEKHD1A6NEE1 506 aa22.22■■□□□ 1.15
VARS-215ENST00000375663 FOXD1Q16676 465 aa22.2■■□□□ 1.14
VARS-215ENST00000375663 LAS1LQ9Y4W2 734 aaKnown RBP22.17■■□□□ 1.14
VARS-215ENST00000375663 HSP90AA1P07900 732 aaKnown RBP22.16■■□□□ 1.14
VARS-215ENST00000375663 ATAD2BQ9ULI0 1458 aa22.15■■□□□ 1.14
VARS-215ENST00000375663 PPM1GO15355 546 aaPredicted RBP22.15■■□□□ 1.14
VARS-215ENST00000375663 DEKP35659 375 aaKnown RBP22.14■■□□□ 1.14
VARS-215ENST00000375663 ARXQ96QS3 562 aa22.14■■□□□ 1.13
VARS-215ENST00000375663 MPHOSPH9Q99550 1183 aa22.13■■□□□ 1.13
VARS-215ENST00000375663 FMN1Q68DA7 1419 aa22.11■■□□□ 1.13
VARS-215ENST00000375663 L3MBTL2Q969R5 705 aa22.1■■□□□ 1.13
VARS-215ENST00000375663 FHOD3Q2V2M9 1422 aa22.09■■□□□ 1.13
VARS-215ENST00000375663 KNSTRNQ9Y448 316 aa22.09■■□□□ 1.13
VARS-215ENST00000375663 KIF21BO75037 1637 aa22.06■■□□□ 1.12
VARS-215ENST00000375663 DCAF11Q8TEB1 546 aa22.06■■□□□ 1.12
VARS-215ENST00000375663 CC2D1BQ5T0F9 858 aaKnown RBP22.05■■□□□ 1.12
VARS-215ENST00000375663 ANP32BQ92688 251 aaKnown RBP22.04■■□□□ 1.12
VARS-215ENST00000375663 EIF4G1Q04637 1599 aaKnown RBP22.03■■□□□ 1.12
VARS-215ENST00000375663 BECN1Q14457 450 aa22.03■■□□□ 1.12
VARS-215ENST00000375663 RGS3P49796 1198 aa22.02■■□□□ 1.12
VARS-215ENST00000375663 RTN4Q9NQC3 1192 aaKnown RBP22.02■■□□□ 1.11
VARS-215ENST00000375663 PKD2Q13563 968 aa22.01■■□□□ 1.11
VARS-215ENST00000375663 CDCA8Q53HL2 280 aa22■■□□□ 1.11
VARS-215ENST00000375663 TDRD9Q8NDG6 1382 aaKnown RBP21.98■■□□□ 1.11
VARS-215ENST00000375663 SLC24A1O60721 1099 aa21.98■■□□□ 1.11
VARS-215ENST00000375663 NUDCQ9Y266 331 aa21.97■■□□□ 1.11
VARS-215ENST00000375663 PLPPR3Q6T4P5 718 aa21.95■■□□□ 1.1
VARS-215ENST00000375663 PRKRIP1Q9H875 184 aaPredicted RBP21.94■■□□□ 1.1
VARS-215ENST00000375663 RCAN3Q9UKA8 241 aa21.93■■□□□ 1.1
VARS-215ENST00000375663 CADPSQ9ULU8 1353 aa21.92■■□□□ 1.1
VARS-215ENST00000375663 NEUROD2Q15784 382 aa21.91■■□□□ 1.1
VARS-215ENST00000375663 TMF1P82094 1093 aa21.89■■□□□ 1.1
VARS-215ENST00000375663 IPO9Q96P70 1041 aaKnown RBP21.88■■□□□ 1.09
VARS-215ENST00000375663 IGF1RP08069 1367 aa21.88■■□□□ 1.09
VARS-215ENST00000375663 PHLDB1Q86UU1 1377 aa21.88■■□□□ 1.09
VARS-215ENST00000375663 CCDC18Q5T9S5 1454 aa21.88■■□□□ 1.09
VARS-215ENST00000375663 TCERG1O14776 1098 aaKnown RBP21.88■■□□□ 1.09
VARS-215ENST00000375663 RALBP1Q15311 655 aa21.86■■□□□ 1.09
VARS-215ENST00000375663 STAG3Q9UJ98 1225 aa21.86■■□□□ 1.09
VARS-215ENST00000375663 ARAP1Q96P48 1450 aa21.86■■□□□ 1.09
VARS-215ENST00000375663 FANCIQ9NVI1 1328 aa21.86■■□□□ 1.09
VARS-215ENST00000375663 RRBP1Q9P2E9 1410 aaKnown RBP21.86■■□□□ 1.09
VARS-215ENST00000375663 KTN1Q86UP2 1357 aaKnown RBP21.86■■□□□ 1.09
VARS-215ENST00000375663 GLIPR1L2Q4G1C9 344 aa21.85■■□□□ 1.09
VARS-215ENST00000375663 ZBED9Q6R2W3 1325 aa21.85■■□□□ 1.09
VARS-215ENST00000375663 FRAT1Q92837 279 aaPredicted RBP21.84■■□□□ 1.09
VARS-215ENST00000375663 SENP3Q9H4L4 574 aaPredicted RBP21.84■■□□□ 1.09
VARS-215ENST00000375663 SYNJ1O43426 1573 aa21.83■■□□□ 1.08
VARS-215ENST00000375663 CFAP53Q96M91 514 aa21.82■■□□□ 1.08
VARS-215ENST00000375663 NUP155O75694 1391 aa21.82■■□□□ 1.08
VARS-215ENST00000375663 NPM1P06748 294 aaKnown RBP eCLIP21.8■■□□□ 1.08
VARS-215ENST00000375663 LRRC9Q6ZRR7 1453 aa21.78■■□□□ 1.08
VARS-215ENST00000375663 FTSJ3Q8IY81 847 aaKnown RBP21.78■■□□□ 1.08
VARS-215ENST00000375663 NLRP13Q86W25 1043 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms