RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 AAMPQ13685 434 aa11.68□□□□□ -0.54
USP48-203ENST00000374732 POLR3GLQ9BT43 218 aa11.66□□□□□ -0.54
USP48-203ENST00000374732 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP48-203ENST00000374732 PPARGC1BQ86YN6 1023 aaKnown RBP11.62□□□□□ -0.55
USP48-203ENST00000374732 HSP90B1P14625 803 aaKnown RBP11.59□□□□□ -0.55
USP48-203ENST00000374732 RSPH4AQ5TD94 716 aa11.58□□□□□ -0.56
USP48-203ENST00000374732 RBM10P98175 930 aaKnown RBP11.58□□□□□ -0.56
USP48-203ENST00000374732 NAP1L5Q96NT1 182 aaPredicted RBP11.57□□□□□ -0.56
USP48-203ENST00000374732 RSPH6AQ9H0K4 717 aa11.55□□□□□ -0.56
USP48-203ENST00000374732 WDR62O43379 1518 aa11.55□□□□□ -0.56
USP48-203ENST00000374732 KDM2AQ9Y2K7 1162 aa11.54□□□□□ -0.56
USP48-203ENST00000374732 PRDM2Q13029 1718 aa11.53□□□□□ -0.56
USP48-203ENST00000374732 DEKP35659 375 aaKnown RBP11.53□□□□□ -0.56
USP48-203ENST00000374732 CLSPNQ9HAW4 1339 aa11.51□□□□□ -0.57
USP48-203ENST00000374732 PDS5BQ9NTI5 1447 aa11.51□□□□□ -0.57
USP48-203ENST00000374732 BAZ1BQ9UIG0 1483 aaKnown RBP11.5□□□□□ -0.57
USP48-203ENST00000374732 ACIN1Q9UKV3 1341 aaKnown RBP11.5□□□□□ -0.57
USP48-203ENST00000374732 FBLN2P98095 1184 aa11.5□□□□□ -0.57
USP48-203ENST00000374732 ERCC6Q03468 1493 aa11.49□□□□□ -0.57
USP48-203ENST00000374732 WDR97A6NE52 1622 aa11.48□□□□□ -0.57
USP48-203ENST00000374732 PHF23Q9BUL5 403 aaPredicted RBP11.48□□□□□ -0.57
USP48-203ENST00000374732 SLC4A1APQ9BWU0 796 aaKnown RBP11.47□□□□□ -0.57
USP48-203ENST00000374732 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.47□□□□□ -0.57
USP48-203ENST00000374732 ZNF326Q5BKZ1 582 aaKnown RBP11.47□□□□□ -0.57
USP48-203ENST00000374732 BCCIPQ9P287 314 aaKnown RBP eCLIP11.46□□□□□ -0.57
USP48-203ENST00000374732 MRC2Q9UBG0 1479 aa11.44□□□□□ -0.58
USP48-203ENST00000374732 ZMYND15Q9H091 742 aa11.44□□□□□ -0.58
USP48-203ENST00000374732 RSF1Q96T23 1441 aaPredicted RBP11.43□□□□□ -0.58
USP48-203ENST00000374732 BRPF3Q9ULD4 1205 aa11.43□□□□□ -0.58
USP48-203ENST00000374732 ERICH6BQ5W0A0 696 aa11.42□□□□□ -0.58
USP48-203ENST00000374732 CCDC9Q9Y3X0 531 aaKnown RBP11.42□□□□□ -0.58
USP48-203ENST00000374732 KIF21AQ7Z4S6 1674 aa11.4□□□□□ -0.58
USP48-203ENST00000374732 VSIG10Q8N0Z9 540 aa11.38□□□□□ -0.59
USP48-203ENST00000374732 NEUROD1Q13562 356 aa11.35□□□□□ -0.59
USP48-203ENST00000374732 CADPSQ9ULU8 1353 aa11.35□□□□□ -0.59
USP48-203ENST00000374732 GLIPR1L2Q4G1C9 344 aa11.33□□□□□ -0.6
USP48-203ENST00000374732 PRDM10Q9NQV6 1147 aa11.33□□□□□ -0.6
USP48-203ENST00000374732 ABCC8Q09428 1581 aa11.33□□□□□ -0.6
USP48-203ENST00000374732 ZFP91Q96JP5 570 aaPredicted RBP11.32□□□□□ -0.6
USP48-203ENST00000374732 MYT1LQ9UL68 1186 aa11.32□□□□□ -0.6
USP48-203ENST00000374732 CFTRP13569 1480 aa11.31□□□□□ -0.6
USP48-203ENST00000374732 HMGB1P09429 215 aaKnown RBP11.31□□□□□ -0.6
USP48-203ENST00000374732 ZNF592Q92610 1267 aa11.3□□□□□ -0.6
USP48-203ENST00000374732 TOP2AP11388 1531 aaKnown RBP11.3□□□□□ -0.6
USP48-203ENST00000374732 TMED8Q6PL24 325 aaPredicted RBP11.29□□□□□ -0.6
USP48-203ENST00000374732 NAP1L2Q9ULW6 460 aaPredicted RBP11.29□□□□□ -0.6
USP48-203ENST00000374732 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.27□□□□□ -0.61
USP48-203ENST00000374732 MROH2BQ7Z745 1585 aa11.27□□□□□ -0.61
USP48-203ENST00000374732 ARID3AQ99856 593 aa11.27□□□□□ -0.61
USP48-203ENST00000374732 PUS7Q96PZ0 661 aaKnown RBP11.26□□□□□ -0.61
USP48-203ENST00000374732 CEP164Q9UPV0 1460 aa11.26□□□□□ -0.61
USP48-203ENST00000374732 CNPY4Q8N129 248 aa11.25□□□□□ -0.61
USP48-203ENST00000374732 ZBTB22O15209 634 aa11.22□□□□□ -0.61
USP48-203ENST00000374732 TICAM2Q86XR7 235 aa11.22□□□□□ -0.61
USP48-203ENST00000374732 NESP48681 1621 aa11.21□□□□□ -0.61
USP48-203ENST00000374732 CHMP4BQ9H444 224 aaKnown RBP11.21□□□□□ -0.62
USP48-203ENST00000374732 IFT140Q96RY7 1462 aa11.2□□□□□ -0.62
USP48-203ENST00000374732 NCLP19338 710 aaKnown RBP11.19□□□□□ -0.62
USP48-203ENST00000374732 WIZO95785 1651 aa11.18□□□□□ -0.62
USP48-203ENST00000374732 ZNF428Q96B54 188 aa11.18□□□□□ -0.62
USP48-203ENST00000374732 NECTIN2Q92692 538 aa11.17□□□□□ -0.62
USP48-203ENST00000374732 SECISBP2LQ93073 1101 aaKnown RBP11.16□□□□□ -0.62
USP48-203ENST00000374732 FANCD2Q9BXW9 1451 aa11.16□□□□□ -0.62
USP48-203ENST00000374732 ZNF526Q8TF50 670 aaPredicted RBP11.15□□□□□ -0.62
USP48-203ENST00000374732 TRHP20396 242 aaPredicted RBP11.14□□□□□ -0.63
USP48-203ENST00000374732 FKBP8Q14318 412 aa11.14□□□□□ -0.63
USP48-203ENST00000374732 CWC22Q9HCG8 908 aaKnown RBP11.13□□□□□ -0.63
USP48-203ENST00000374732 DNMBPQ6XZF7 1577 aa11.12□□□□□ -0.63
USP48-203ENST00000374732 WWC1Q8IX03 1113 aa11.1□□□□□ -0.63
USP48-203ENST00000374732 CERS3Q8IU89 383 aa11.09□□□□□ -0.63
USP48-203ENST00000374732 ZNF692Q9BU19 519 aaPredicted RBP11.09□□□□□ -0.63
USP48-203ENST00000374732 TEX2Q8IWB9 1127 aa11.08□□□□□ -0.64
USP48-203ENST00000374732 PSMD1Q99460 953 aa11.08□□□□□ -0.64
USP48-203ENST00000374732 URB2Q14146 1524 aaKnown RBP11.08□□□□□ -0.64
USP48-203ENST00000374732 CLSTN1O94985 981 aa11.07□□□□□ -0.64
USP48-203ENST00000374732 KCNG1Q9UIX4 513 aa11.07□□□□□ -0.64
USP48-203ENST00000374732 IPO4Q8TEX9 1081 aaKnown RBP11.07□□□□□ -0.64
USP48-203ENST00000374732 BBXQ8WY36 941 aaPredicted RBP11.06□□□□□ -0.64
USP48-203ENST00000374732 TRIM41Q8WV44 630 aa11.05□□□□□ -0.64
USP48-203ENST00000374732 PRDM16Q9HAZ2 1276 aa11.05□□□□□ -0.64
USP48-203ENST00000374732 TARBP1Q13395 1621 aaKnown RBP11.05□□□□□ -0.64
USP48-203ENST00000374732 RIMBP3CA6NJZ7 1639 aa11.04□□□□□ -0.64
USP48-203ENST00000374732 RIMBP3BA6NNM3 1639 aa11.04□□□□□ -0.64
USP48-203ENST00000374732 RIMBP3Q9UFD9 1639 aa11.04□□□□□ -0.64
USP48-203ENST00000374732 FAM43BQ6ZT52 329 aaPredicted RBP11.03□□□□□ -0.64
USP48-203ENST00000374732 CHRM1P11229 460 aaPredicted RBP11.01□□□□□ -0.65
USP48-203ENST00000374732 CLASP1Q7Z460 1538 aa11□□□□□ -0.65
USP48-203ENST00000374732 PLCD4Q9BRC7 762 aa10.99□□□□□ -0.65
USP48-203ENST00000374732 TOPBP1Q92547 1522 aa10.99□□□□□ -0.65
USP48-203ENST00000374732 EIF4G3O43432 1585 aaKnown RBP10.99□□□□□ -0.65
USP48-203ENST00000374732 CCDC88BA6NC98 1476 aa10.98□□□□□ -0.65
USP48-203ENST00000374732 ZBTB7CA1YPR0 619 aa10.98□□□□□ -0.65
USP48-203ENST00000374732 RNF216Q9NWF9 866 aaPredicted RBP10.98□□□□□ -0.65
USP48-203ENST00000374732 FTSJ3Q8IY81 847 aaKnown RBP10.98□□□□□ -0.65
USP48-203ENST00000374732 ARID4BQ4LE39 1312 aaPredicted RBP10.97□□□□□ -0.65
USP48-203ENST00000374732 OSCARQ8IYS5 282 aa10.96□□□□□ -0.65
USP48-203ENST00000374732 MAGI1Q96QZ7 1491 aaPredicted RBP10.96□□□□□ -0.65
USP48-203ENST00000374732 TSHZ2Q9NRE2 1034 aa10.95□□□□□ -0.66
USP48-203ENST00000374732 ARHGEF11O15085 1522 aa10.94□□□□□ -0.66
USP48-203ENST00000374732 GTF2E1P29083 439 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms