RNA–Protein interactions for RNA: ENST00000368289.6

ECHDC1-202, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5 BASIC

Gene ECHDC1, Length 909 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-202ENST00000368289 WDR62O43379 1518 aa12.53□□□□□ -0.4
ECHDC1-202ENST00000368289 MRC2Q9UBG0 1479 aa12.52□□□□□ -0.41
ECHDC1-202ENST00000368289 STAG3Q9UJ98 1225 aa12.51□□□□□ -0.41
ECHDC1-202ENST00000368289 ARAP1Q96P48 1450 aa12.46□□□□□ -0.42
ECHDC1-202ENST00000368289 BAZ1BQ9UIG0 1483 aaKnown RBP12.4□□□□□ -0.42
ECHDC1-202ENST00000368289 SPDYE1Q8NFV5 336 aaPredicted RBP12.4□□□□□ -0.42
ECHDC1-202ENST00000368289 CADPSQ9ULU8 1353 aa12.39□□□□□ -0.43
ECHDC1-202ENST00000368289 VASPP50552 380 aaPredicted RBP12.38□□□□□ -0.43
ECHDC1-202ENST00000368289 SMARCA4P51532 1647 aa12.37□□□□□ -0.43
ECHDC1-202ENST00000368289 REM2Q8IYK8 340 aaPredicted RBP12.36□□□□□ -0.43
ECHDC1-202ENST00000368289 CLEC11AQ9Y240 323 aa12.3□□□□□ -0.44
ECHDC1-202ENST00000368289 PLEKHG5O94827 1062 aa12.29□□□□□ -0.44
ECHDC1-202ENST00000368289 ZNF608Q9ULD9 1512 aaPredicted RBP12.27□□□□□ -0.44
ECHDC1-202ENST00000368289 PEG3Q9GZU2 1588 aa12.27□□□□□ -0.44
ECHDC1-202ENST00000368289 PLCD3Q8N3E9 789 aa12.27□□□□□ -0.45
ECHDC1-202ENST00000368289 AMER1Q5JTC6 1135 aaPredicted RBP12.26□□□□□ -0.45
ECHDC1-202ENST00000368289 MIER1Q8N108 512 aa12.26□□□□□ -0.45
ECHDC1-202ENST00000368289 URB2Q14146 1524 aaKnown RBP12.26□□□□□ -0.45
ECHDC1-202ENST00000368289 CEP164Q9UPV0 1460 aa12.25□□□□□ -0.45
ECHDC1-202ENST00000368289 PRR29P0C7W0 189 aa12.24□□□□□ -0.45
ECHDC1-202ENST00000368289 FANCD2Q9BXW9 1451 aa12.22□□□□□ -0.45
ECHDC1-202ENST00000368289 KDM4FA0A1W2PPD8 638 aa12.2□□□□□ -0.46
ECHDC1-202ENST00000368289 ZBTB47Q9UFB7 747 aaPredicted RBP12.2□□□□□ -0.46
ECHDC1-202ENST00000368289 PITPNM1O00562 1244 aa12.19□□□□□ -0.46
ECHDC1-202ENST00000368289 KLHL34Q8N239 644 aa12.19□□□□□ -0.46
ECHDC1-202ENST00000368289 IFNLR1Q8IU57 520 aaPredicted RBP12.18□□□□□ -0.46
ECHDC1-202ENST00000368289 RSF1Q96T23 1441 aaPredicted RBP12.17□□□□□ -0.46
ECHDC1-202ENST00000368289 MROH2BQ7Z745 1585 aa12.12□□□□□ -0.47
ECHDC1-202ENST00000368289 SPOCK2Q92563 424 aa12.09□□□□□ -0.47
ECHDC1-202ENST00000368289 RTN4Q9NQC3 1192 aaKnown RBP12.09□□□□□ -0.47
ECHDC1-202ENST00000368289 CHD1O14646 1710 aa12.07□□□□□ -0.48
ECHDC1-202ENST00000368289 CFTRP13569 1480 aa12.07□□□□□ -0.48
ECHDC1-202ENST00000368289 IFT140Q96RY7 1462 aa12.06□□□□□ -0.48
ECHDC1-202ENST00000368289 CREBZFQ9NS37 354 aa12.04□□□□□ -0.48
ECHDC1-202ENST00000368289 AQRO60306 1485 aaKnown RBP eCLIP12.03□□□□□ -0.48
ECHDC1-202ENST00000368289 EIF4G3O43432 1585 aaKnown RBP12.02□□□□□ -0.49
ECHDC1-202ENST00000368289 CHRDL2Q6WN34 429 aa12.02□□□□□ -0.49
ECHDC1-202ENST00000368289 CLASP1Q7Z460 1538 aa12.01□□□□□ -0.49
ECHDC1-202ENST00000368289 NPM1P06748 294 aaKnown RBP eCLIP11.98□□□□□ -0.49
ECHDC1-202ENST00000368289 FXR2P51116 673 aaKnown RBP eCLIP11.96□□□□□ -0.49
ECHDC1-202ENST00000368289 FBXO41Q8TF61 875 aa11.93□□□□□ -0.5
ECHDC1-202ENST00000368289 GAPVD1Q14C86 1478 aa11.93□□□□□ -0.5
ECHDC1-202ENST00000368289 PRKAR2AP13861 404 aaKnown RBP11.92□□□□□ -0.5
ECHDC1-202ENST00000368289 MNX1P50219 401 aaPredicted RBP11.91□□□□□ -0.5
ECHDC1-202ENST00000368289 CHADLQ6NUI6 762 aa11.91□□□□□ -0.5
ECHDC1-202ENST00000368289 ILDR2Q71H61 639 aa11.91□□□□□ -0.5
ECHDC1-202ENST00000368289 TOPBP1Q92547 1522 aa11.91□□□□□ -0.5
ECHDC1-202ENST00000368289 GSE1Q14687 1217 aa11.88□□□□□ -0.51
ECHDC1-202ENST00000368289 PIP4P2Q8N4L2 257 aa11.88□□□□□ -0.51
ECHDC1-202ENST00000368289 TARBP1Q13395 1621 aaKnown RBP11.88□□□□□ -0.51
ECHDC1-202ENST00000368289 CIZ1Q9ULV3 898 aaPredicted RBP11.87□□□□□ -0.51
ECHDC1-202ENST00000368289 FARP1Q9Y4F1 1045 aaPredicted RBP11.87□□□□□ -0.51
ECHDC1-202ENST00000368289 KIF13AQ9H1H9 1805 aa11.87□□□□□ -0.51
ECHDC1-202ENST00000368289 WIZO95785 1651 aa11.87□□□□□ -0.51
ECHDC1-202ENST00000368289 NUBP1P53384 320 aa11.86□□□□□ -0.51
ECHDC1-202ENST00000368289 LMTK3Q96Q04 1460 aa11.86□□□□□ -0.51
ECHDC1-202ENST00000368289 HECW2Q9P2P5 1572 aa11.86□□□□□ -0.51
ECHDC1-202ENST00000368289 ERCC6L2Q5T890 1561 aa11.85□□□□□ -0.51
ECHDC1-202ENST00000368289 SOCS7O14512 581 aa11.85□□□□□ -0.51
ECHDC1-202ENST00000368289 FAM212AQ96EL1 285 aa11.84□□□□□ -0.51
ECHDC1-202ENST00000368289 PKD2Q13563 968 aa11.83□□□□□ -0.52
ECHDC1-202ENST00000368289 DCAF8Q5TAQ9 597 aa11.83□□□□□ -0.52
ECHDC1-202ENST00000368289 ECM2O94769 699 aaPredicted RBP11.81□□□□□ -0.52
ECHDC1-202ENST00000368289 SNAPC4Q5SXM2 1469 aa11.81□□□□□ -0.52
ECHDC1-202ENST00000368289 TDRD9Q8NDG6 1382 aaKnown RBP11.8□□□□□ -0.52
ECHDC1-202ENST00000368289 SYNJ1O43426 1573 aa11.78□□□□□ -0.52
ECHDC1-202ENST00000368289 RAD54L2Q9Y4B4 1467 aa11.77□□□□□ -0.52
ECHDC1-202ENST00000368289 CHMP7Q8WUX9 453 aaPredicted RBP11.77□□□□□ -0.53
ECHDC1-202ENST00000368289 RASEFQ8IZ41 740 aa11.75□□□□□ -0.53
ECHDC1-202ENST00000368289 SYNJ2O15056 1496 aa11.75□□□□□ -0.53
ECHDC1-202ENST00000368289 PAK3O75914 559 aaPredicted RBP11.74□□□□□ -0.53
ECHDC1-202ENST00000368289 FAM69CQ0P6D2 419 aa11.74□□□□□ -0.53
ECHDC1-202ENST00000368289 ADGRL1O94910 1474 aa11.74□□□□□ -0.53
ECHDC1-202ENST00000368289 POLA1P09884 1462 aaPredicted RBP11.74□□□□□ -0.53
ECHDC1-202ENST00000368289 DNMBPQ6XZF7 1577 aa11.71□□□□□ -0.53
ECHDC1-202ENST00000368289 ABCC10Q5T3U5 1492 aa11.71□□□□□ -0.53
ECHDC1-202ENST00000368289 TSPYL2Q9H2G4 693 aaPredicted RBP11.69□□□□□ -0.54
ECHDC1-202ENST00000368289 KDM6BO15054 1643 aa11.68□□□□□ -0.54
ECHDC1-202ENST00000368289 MAGI1Q96QZ7 1491 aaPredicted RBP11.68□□□□□ -0.54
ECHDC1-202ENST00000368289 ABCC8Q09428 1581 aa11.67□□□□□ -0.54
ECHDC1-202ENST00000368289 CHRM1P11229 460 aaPredicted RBP11.67□□□□□ -0.54
ECHDC1-202ENST00000368289 TAOK2Q9UL54 1235 aa11.65□□□□□ -0.54
ECHDC1-202ENST00000368289 SOGA1O94964 1423 aa11.65□□□□□ -0.54
ECHDC1-202ENST00000368289 PRDM2Q13029 1718 aa11.65□□□□□ -0.54
ECHDC1-202ENST00000368289 DIP2BQ9P265 1576 aa11.62□□□□□ -0.55
ECHDC1-202ENST00000368289 CEP170Q5SW79 1584 aa11.62□□□□□ -0.55
ECHDC1-202ENST00000368289 RGL2O15211 777 aa11.61□□□□□ -0.55
ECHDC1-202ENST00000368289 DISP3Q9P2K9 1392 aa11.61□□□□□ -0.55
ECHDC1-202ENST00000368289 GRIN2BQ13224 1484 aa11.61□□□□□ -0.55
ECHDC1-202ENST00000368289 TOP2AP11388 1531 aaKnown RBP11.6□□□□□ -0.55
ECHDC1-202ENST00000368289 CD44P16070 742 aaKnown RBP11.6□□□□□ -0.55
ECHDC1-202ENST00000368289 PYGBP11216 843 aa11.59□□□□□ -0.55
ECHDC1-202ENST00000368289 CCDC88BA6NC98 1476 aa11.58□□□□□ -0.56
ECHDC1-202ENST00000368289 COL17A1Q9UMD9 1497 aaPredicted RBP11.58□□□□□ -0.56
ECHDC1-202ENST00000368289 ZRANB1Q9UGI0 708 aa11.57□□□□□ -0.56
ECHDC1-202ENST00000368289 CCDC61Q9Y6R9 512 aa11.57□□□□□ -0.56
ECHDC1-202ENST00000368289 MAPKBP1O60336 1514 aa11.55□□□□□ -0.56
ECHDC1-202ENST00000368289 C19orf67A6NJJ6 358 aa11.55□□□□□ -0.56
ECHDC1-202ENST00000368289 RIOK3O14730 519 aaKnown RBP11.55□□□□□ -0.56
ECHDC1-202ENST00000368289 SHROOM2Q13796 1616 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms