RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MAMSTRQ6ZN01 415 aa4.58□□□□□ -1.68
VPS54-202ENST00000354504 ABCC9O60706 1549 aa4.58□□□□□ -1.68
VPS54-202ENST00000354504 IER5LQ5T953 404 aa4.58□□□□□ -1.68
VPS54-202ENST00000354504 IFNLR1Q8IU57 520 aaPredicted RBP4.58□□□□□ -1.68
VPS54-202ENST00000354504 CHRM1P11229 460 aaPredicted RBP4.57□□□□□ -1.68
VPS54-202ENST00000354504 CLEC11AQ9Y240 323 aa4.57□□□□□ -1.68
VPS54-202ENST00000354504 POTEIP0CG38 1075 aa4.56□□□□□ -1.68
VPS54-202ENST00000354504 SLC39A7Q92504 469 aa4.56□□□□□ -1.68
VPS54-202ENST00000354504 C7P10643 843 aa4.55□□□□□ -1.68
VPS54-202ENST00000354504 TIE1P35590 1138 aa4.55□□□□□ -1.68
VPS54-202ENST00000354504 EIF4G1Q04637 1599 aaKnown RBP4.55□□□□□ -1.68
VPS54-202ENST00000354504 NACADO15069 1562 aa4.53□□□□□ -1.68
VPS54-202ENST00000354504 BICRAQ9NZM4 1560 aa4.53□□□□□ -1.68
VPS54-202ENST00000354504 PLEKHG5O94827 1062 aa4.52□□□□□ -1.69
VPS54-202ENST00000354504 PKD2Q13563 968 aa4.51□□□□□ -1.69
VPS54-202ENST00000354504 ZRANB1Q9UGI0 708 aa4.51□□□□□ -1.69
VPS54-202ENST00000354504 CCDC61Q9Y6R9 512 aa4.51□□□□□ -1.69
VPS54-202ENST00000354504 FBXO3Q9UK99 471 aa4.5□□□□□ -1.69
VPS54-202ENST00000354504 VASPP50552 380 aaPredicted RBP4.5□□□□□ -1.69
VPS54-202ENST00000354504 ATMINO43313 823 aaPredicted RBP4.5□□□□□ -1.69
VPS54-202ENST00000354504 SCRIBQ14160 1630 aa4.49□□□□□ -1.69
VPS54-202ENST00000354504 KIF12Q96FN5 646 aa4.48□□□□□ -1.69
VPS54-202ENST00000354504 CHADLQ6NUI6 762 aa4.48□□□□□ -1.69
VPS54-202ENST00000354504 TRIM41Q8WV44 630 aa4.48□□□□□ -1.69
VPS54-202ENST00000354504 NUBP1P53384 320 aa4.47□□□□□ -1.69
VPS54-202ENST00000354504 ILDR1Q86SU0 546 aaPredicted RBP4.47□□□□□ -1.69
VPS54-202ENST00000354504 DCBLD2Q96PD2 775 aa4.47□□□□□ -1.69
VPS54-202ENST00000354504 PEG3Q9GZU2 1588 aa4.44□□□□□ -1.7
VPS54-202ENST00000354504 RB1CC1Q8TDY2 1594 aa4.43□□□□□ -1.7
VPS54-202ENST00000354504 GSE1Q14687 1217 aa4.43□□□□□ -1.7
VPS54-202ENST00000354504 WIZO95785 1651 aa4.43□□□□□ -1.7
VPS54-202ENST00000354504 BAZ1AQ9NRL2 1556 aaPredicted RBP4.41□□□□□ -1.7
VPS54-202ENST00000354504 MROH2BQ7Z745 1585 aa4.4□□□□□ -1.7
VPS54-202ENST00000354504 SMARCA4P51532 1647 aa4.4□□□□□ -1.71
VPS54-202ENST00000354504 GALR2O43603 387 aaPredicted RBP4.4□□□□□ -1.71
VPS54-202ENST00000354504 PLCB2Q00722 1185 aa4.4□□□□□ -1.71
VPS54-202ENST00000354504 OTUD5Q96G74 571 aa4.4□□□□□ -1.71
VPS54-202ENST00000354504 RGL2O15211 777 aa4.39□□□□□ -1.71
VPS54-202ENST00000354504 CECR2Q9BXF3 1484 aa4.39□□□□□ -1.71
VPS54-202ENST00000354504 PRKCSHP14314 528 aaPredicted RBP4.39□□□□□ -1.71
VPS54-202ENST00000354504 RSF1Q96T23 1441 aaPredicted RBP4.38□□□□□ -1.71
VPS54-202ENST00000354504 KDM2AQ9Y2K7 1162 aa4.38□□□□□ -1.71
VPS54-202ENST00000354504 MS4A3Q96HJ5 214 aa4.38□□□□□ -1.71
VPS54-202ENST00000354504 BMP2KQ9NSY1 1161 aaPredicted RBP4.37□□□□□ -1.71
VPS54-202ENST00000354504 DCAF8L2P0C7V8 631 aa4.37□□□□□ -1.71
VPS54-202ENST00000354504 PRDM2Q13029 1718 aa4.37□□□□□ -1.71
VPS54-202ENST00000354504 FAM212AQ96EL1 285 aa4.36□□□□□ -1.71
VPS54-202ENST00000354504 PHF12Q96QT6 1004 aa4.36□□□□□ -1.71
VPS54-202ENST00000354504 SHROOM4Q9ULL8 1493 aa4.36□□□□□ -1.71
VPS54-202ENST00000354504 RNF25Q96BH1 459 aaPredicted RBP4.35□□□□□ -1.71
VPS54-202ENST00000354504 SCUBE2Q9NQ36 999 aa4.35□□□□□ -1.71
VPS54-202ENST00000354504 IRX5P78411 483 aaPredicted RBP4.35□□□□□ -1.71
VPS54-202ENST00000354504 PELP1Q8IZL8 1130 aaKnown RBP4.35□□□□□ -1.71
VPS54-202ENST00000354504 METRNQ9UJH8 293 aa4.35□□□□□ -1.71
VPS54-202ENST00000354504 SNPHO15079 494 aa4.35□□□□□ -1.71
VPS54-202ENST00000354504 ZNF467Q7Z7K2 595 aaPredicted RBP4.35□□□□□ -1.71
VPS54-202ENST00000354504 TMEM121BQ9BXQ6 578 aaPredicted RBP4.34□□□□□ -1.71
VPS54-202ENST00000354504 SMARCA2P51531 1590 aa4.34□□□□□ -1.72
VPS54-202ENST00000354504 ATN1P54259 1190 aaPredicted RBP4.33□□□□□ -1.72
VPS54-202ENST00000354504 POTEFA5A3E0 1075 aa4.33□□□□□ -1.72
VPS54-202ENST00000354504 TTLL13PA6NNM8 815 aa4.33□□□□□ -1.72
VPS54-202ENST00000354504 RASEFQ8IZ41 740 aa4.33□□□□□ -1.72
VPS54-202ENST00000354504 HAP1P54257 671 aaPredicted RBP4.32□□□□□ -1.72
VPS54-202ENST00000354504 TOP2AP11388 1531 aaKnown RBP4.32□□□□□ -1.72
VPS54-202ENST00000354504 L3MBTL3Q96JM7 780 aaPredicted RBP4.32□□□□□ -1.72
VPS54-202ENST00000354504 MIER1Q8N108 512 aa4.31□□□□□ -1.72
VPS54-202ENST00000354504 POTEB2H3BUK9 544 aa4.3□□□□□ -1.72
VPS54-202ENST00000354504 POTEJP0CG39 1038 aa4.3□□□□□ -1.72
VPS54-202ENST00000354504 OCEL1Q9H607 264 aa4.3□□□□□ -1.72
VPS54-202ENST00000354504 MAP3K13O43283 966 aa4.3□□□□□ -1.72
VPS54-202ENST00000354504 ECM2O94769 699 aaPredicted RBP4.29□□□□□ -1.72
VPS54-202ENST00000354504 KLHL34Q8N239 644 aa4.29□□□□□ -1.72
VPS54-202ENST00000354504 TSHZ2Q9NRE2 1034 aa4.29□□□□□ -1.72
VPS54-202ENST00000354504 ZSWIM6Q9HCJ5 1215 aa4.28□□□□□ -1.72
VPS54-202ENST00000354504 NKX1-1Q15270 411 aaPredicted RBP4.28□□□□□ -1.72
VPS54-202ENST00000354504 DNAJC5Q9H3Z4 198 aa4.28□□□□□ -1.72
VPS54-202ENST00000354504 TAOK2Q9UL54 1235 aa4.28□□□□□ -1.72
VPS54-202ENST00000354504 PLCD3Q8N3E9 789 aa4.27□□□□□ -1.73
VPS54-202ENST00000354504 SPOCK2Q92563 424 aa4.27□□□□□ -1.73
VPS54-202ENST00000354504 PAXIP1Q6ZW49 1069 aaPredicted RBP4.27□□□□□ -1.73
VPS54-202ENST00000354504 CFAP44Q96MT7 982 aa4.26□□□□□ -1.73
VPS54-202ENST00000354504 LCE2DQ5TA82 110 aaPredicted RBP4.25□□□□□ -1.73
VPS54-202ENST00000354504 PCDHB13Q9Y5F0 798 aa4.25□□□□□ -1.73
VPS54-202ENST00000354504 SOX12O15370 315 aa4.25□□□□□ -1.73
VPS54-202ENST00000354504 BIVM-ERCC5R4GMW8 1640 aa4.25□□□□□ -1.73
VPS54-202ENST00000354504 IFNL1Q8IU54 200 aa4.25□□□□□ -1.73
VPS54-202ENST00000354504 CIZ1Q9ULV3 898 aaPredicted RBP4.24□□□□□ -1.73
VPS54-202ENST00000354504 PDAP1Q13442 181 aaKnown RBP4.24□□□□□ -1.73
VPS54-202ENST00000354504 HMGXB3Q12766 1538 aa4.24□□□□□ -1.73
VPS54-202ENST00000354504 PTGER2P43116 358 aa4.24□□□□□ -1.73
VPS54-202ENST00000354504 CHGAP10645 457 aaKnown RBP4.23□□□□□ -1.73
VPS54-202ENST00000354504 CCDC88BA6NC98 1476 aa4.23□□□□□ -1.73
VPS54-202ENST00000354504 PLCG2P16885 1265 aa4.23□□□□□ -1.73
VPS54-202ENST00000354504 TSPYL2Q9H2G4 693 aaPredicted RBP4.22□□□□□ -1.73
VPS54-202ENST00000354504 WDR97A6NE52 1622 aa4.22□□□□□ -1.73
VPS54-202ENST00000354504 POTEMA6NI47 508 aa4.21□□□□□ -1.74
VPS54-202ENST00000354504 TMEM106CQ9BVX2 250 aa4.21□□□□□ -1.74
VPS54-202ENST00000354504 TRIM35Q9UPQ4 493 aa4.21□□□□□ -1.74
VPS54-202ENST00000354504 SYNJ1O43426 1573 aa4.21□□□□□ -1.74
VPS54-202ENST00000354504 PDCD7Q8N8D1 485 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms