RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 CANXP27824 592 aaKnown RBP6.4□□□□□ -1.38
CSMD3-203ENST00000343508 TOP2AP11388 1531 aaKnown RBP6.4□□□□□ -1.38
CSMD3-203ENST00000343508 TSHZ2Q9NRE2 1034 aa6.4□□□□□ -1.39
CSMD3-203ENST00000343508 CCDC88BA6NC98 1476 aa6.4□□□□□ -1.39
CSMD3-203ENST00000343508 MTUS2Q5JR59 1369 aa6.39□□□□□ -1.39
CSMD3-203ENST00000343508 P3H3Q8IVL6 736 aa6.39□□□□□ -1.39
CSMD3-203ENST00000343508 SOGA1O94964 1423 aa6.39□□□□□ -1.39
CSMD3-203ENST00000343508 BAZ1BQ9UIG0 1483 aaKnown RBP6.39□□□□□ -1.39
CSMD3-203ENST00000343508 PPM1GO15355 546 aaPredicted RBP6.39□□□□□ -1.39
CSMD3-203ENST00000343508 CECR2Q9BXF3 1484 aa6.39□□□□□ -1.39
CSMD3-203ENST00000343508 IRX6P78412 446 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-203ENST00000343508 FHAD1B1AJZ9 1412 aa6.38□□□□□ -1.39
CSMD3-203ENST00000343508 SLC4A1APQ9BWU0 796 aaKnown RBP6.38□□□□□ -1.39
CSMD3-203ENST00000343508 KIF27Q86VH2 1401 aa6.38□□□□□ -1.39
CSMD3-203ENST00000343508 HIRIP3Q9BW71 556 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-203ENST00000343508 SETD5Q9C0A6 1442 aa6.36□□□□□ -1.39
CSMD3-203ENST00000343508 NEFMP07197 916 aa6.35□□□□□ -1.39
CSMD3-203ENST00000343508 BECN1Q14457 450 aa6.35□□□□□ -1.39
CSMD3-203ENST00000343508 DEKP35659 375 aaKnown RBP6.35□□□□□ -1.39
CSMD3-203ENST00000343508 HSP90AA1P07900 732 aaKnown RBP6.33□□□□□ -1.4
CSMD3-203ENST00000343508 SMARCA4P51532 1647 aa6.33□□□□□ -1.4
CSMD3-203ENST00000343508 ARHGAP35Q9NRY4 1499 aa6.33□□□□□ -1.4
CSMD3-203ENST00000343508 WDR43Q15061 677 aaKnown RBP eCLIP6.32□□□□□ -1.4
CSMD3-203ENST00000343508 TRIM44Q96DX7 344 aaPredicted RBP6.32□□□□□ -1.4
CSMD3-203ENST00000343508 KIF21BO75037 1637 aa6.32□□□□□ -1.4
CSMD3-203ENST00000343508 SMARCA2P51531 1590 aa6.32□□□□□ -1.4
CSMD3-203ENST00000343508 SALL2Q9Y467 1007 aaPredicted RBP6.31□□□□□ -1.4
CSMD3-203ENST00000343508 RAB3GAP2Q9H2M9 1393 aa6.31□□□□□ -1.4
CSMD3-203ENST00000343508 FANCIQ9NVI1 1328 aa6.3□□□□□ -1.4
CSMD3-203ENST00000343508 B4GALNT3Q6L9W6 998 aa6.3□□□□□ -1.4
CSMD3-203ENST00000343508 DHX57Q6P158 1386 aaKnown RBP6.3□□□□□ -1.4
CSMD3-203ENST00000343508 SIN3AQ96ST3 1273 aa6.3□□□□□ -1.4
CSMD3-203ENST00000343508 CHIC2Q9UKJ5 165 aa6.29□□□□□ -1.4
CSMD3-203ENST00000343508 USP35Q9P2H5 1018 aa6.29□□□□□ -1.4
CSMD3-203ENST00000343508 IPO9Q96P70 1041 aaKnown RBP6.28□□□□□ -1.4
CSMD3-203ENST00000343508 ZNF777Q9ULD5 760 aaPredicted RBP6.28□□□□□ -1.4
CSMD3-203ENST00000343508 RAPGEF2Q9Y4G8 1499 aa6.26□□□□□ -1.41
CSMD3-203ENST00000343508 RRP7BPQ9NSQ0 103 aa6.25□□□□□ -1.41
CSMD3-203ENST00000343508 RTN4Q9NQC3 1192 aaKnown RBP6.25□□□□□ -1.41
CSMD3-203ENST00000343508 TCERG1O14776 1098 aaKnown RBP6.25□□□□□ -1.41
CSMD3-203ENST00000343508 GOLGA6L22H0YM25 854 aa6.25□□□□□ -1.41
CSMD3-203ENST00000343508 PPP1R15AO75807 674 aaPredicted RBP6.24□□□□□ -1.41
CSMD3-203ENST00000343508 TSPY4P0CV99 314 aa6.24□□□□□ -1.41
CSMD3-203ENST00000343508 TSPY10P0CW01 314 aa6.24□□□□□ -1.41
CSMD3-203ENST00000343508 L1TD1Q5T7N2 865 aaKnown RBP6.24□□□□□ -1.41
CSMD3-203ENST00000343508 ARXQ96QS3 562 aa6.24□□□□□ -1.41
CSMD3-203ENST00000343508 CARD11Q9BXL7 1154 aa6.24□□□□□ -1.41
CSMD3-203ENST00000343508 LAS1LQ9Y4W2 734 aaKnown RBP6.24□□□□□ -1.41
CSMD3-203ENST00000343508 FMN1Q68DA7 1419 aa6.23□□□□□ -1.41
CSMD3-203ENST00000343508 KANK4Q5T7N3 995 aaPredicted RBP6.23□□□□□ -1.41
CSMD3-203ENST00000343508 CDCA8Q53HL2 280 aa6.23□□□□□ -1.41
CSMD3-203ENST00000343508 ERICH3Q5RHP9 1530 aa6.22□□□□□ -1.41
CSMD3-203ENST00000343508 ARID3CA6NKF2 412 aa6.22□□□□□ -1.41
CSMD3-203ENST00000343508 KDM2AQ9Y2K7 1162 aa6.22□□□□□ -1.41
CSMD3-203ENST00000343508 RUSC2Q8N2Y8 1516 aa6.22□□□□□ -1.41
CSMD3-203ENST00000343508 ZBED9Q6R2W3 1325 aa6.21□□□□□ -1.41
CSMD3-203ENST00000343508 SLC24A1O60721 1099 aa6.21□□□□□ -1.41
CSMD3-203ENST00000343508 KNSTRNQ9Y448 316 aa6.21□□□□□ -1.41
CSMD3-203ENST00000343508 CUX2O14529 1486 aa6.21□□□□□ -1.41
CSMD3-203ENST00000343508 TNNT2P45379 298 aaPredicted RBP6.21□□□□□ -1.42
CSMD3-203ENST00000343508 CARMIL1Q5VZK9 1371 aa6.21□□□□□ -1.42
CSMD3-203ENST00000343508 HSPA5P11021 654 aaKnown RBP6.21□□□□□ -1.42
CSMD3-203ENST00000343508 NUDCQ9Y266 331 aa6.21□□□□□ -1.42
CSMD3-203ENST00000343508 NAP1L5Q96NT1 182 aaPredicted RBP6.21□□□□□ -1.42
CSMD3-203ENST00000343508 FBLN2P98095 1184 aa6.2□□□□□ -1.42
CSMD3-203ENST00000343508 ARID4BQ4LE39 1312 aaPredicted RBP6.2□□□□□ -1.42
CSMD3-203ENST00000343508 KCNH8Q96L42 1107 aa6.2□□□□□ -1.42
CSMD3-203ENST00000343508 ROCK2O75116 1388 aaKnown RBP6.2□□□□□ -1.42
CSMD3-203ENST00000343508 PTMSP20962 102 aa6.19□□□□□ -1.42
CSMD3-203ENST00000343508 MYH16Q9H6N6 1097 aa6.19□□□□□ -1.42
CSMD3-203ENST00000343508 RRBP1Q9P2E9 1410 aaKnown RBP6.19□□□□□ -1.42
CSMD3-203ENST00000343508 RALBP1Q15311 655 aa6.19□□□□□ -1.42
CSMD3-203ENST00000343508 RCAN3Q9UKA8 241 aa6.19□□□□□ -1.42
CSMD3-203ENST00000343508 CUX1P39880 1505 aa6.19□□□□□ -1.42
CSMD3-203ENST00000343508 GSE1Q14687 1217 aa6.18□□□□□ -1.42
CSMD3-203ENST00000343508 RSPH6AQ9H0K4 717 aa6.18□□□□□ -1.42
CSMD3-203ENST00000343508 PHLDB1Q86UU1 1377 aa6.18□□□□□ -1.42
CSMD3-203ENST00000343508 CCDC18Q5T9S5 1454 aa6.18□□□□□ -1.42
CSMD3-203ENST00000343508 KTN1Q86UP2 1357 aaKnown RBP6.18□□□□□ -1.42
CSMD3-203ENST00000343508 MS4A1P11836 297 aa6.17□□□□□ -1.42
CSMD3-203ENST00000343508 MSNP26038 577 aaKnown RBP6.17□□□□□ -1.42
CSMD3-203ENST00000343508 CASC1Q6TDU7 716 aa6.17□□□□□ -1.42
CSMD3-203ENST00000343508 NCLP19338 710 aaKnown RBP6.17□□□□□ -1.42
CSMD3-203ENST00000343508 FTSJ3Q8IY81 847 aaKnown RBP6.17□□□□□ -1.42
CSMD3-203ENST00000343508 CFAP44Q96MT7 982 aa6.16□□□□□ -1.42
CSMD3-203ENST00000343508 CFDP1Q9UEE9 299 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-203ENST00000343508 PDE3BQ13370 1112 aa6.16□□□□□ -1.42
CSMD3-203ENST00000343508 CHMP4BQ9H444 224 aaKnown RBP6.16□□□□□ -1.42
CSMD3-203ENST00000343508 RGS3P49796 1198 aa6.16□□□□□ -1.42
CSMD3-203ENST00000343508 MPHOSPH9Q99550 1183 aa6.16□□□□□ -1.42
CSMD3-203ENST00000343508 PRKRIP1Q9H875 184 aaPredicted RBP6.15□□□□□ -1.42
CSMD3-203ENST00000343508 LRRC9Q6ZRR7 1453 aa6.15□□□□□ -1.42
CSMD3-203ENST00000343508 TMF1P82094 1093 aa6.15□□□□□ -1.43
CSMD3-203ENST00000343508 KIF15Q9NS87 1388 aa6.15□□□□□ -1.43
CSMD3-203ENST00000343508 UACAQ9BZF9 1416 aa6.15□□□□□ -1.43
CSMD3-203ENST00000343508 TOP2BQ02880 1626 aa6.15□□□□□ -1.43
CSMD3-203ENST00000343508 DNTTIP2Q5QJE6 756 aaKnown RBP6.15□□□□□ -1.43
CSMD3-203ENST00000343508 CFAP53Q96M91 514 aa6.14□□□□□ -1.43
CSMD3-203ENST00000343508 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.14□□□□□ -1.43
CSMD3-203ENST00000343508 SYNJ1O43426 1573 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms