RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 MIER1Q8N108 512 aa25.07■■□□□ 1.6
SMARCC1-201ENST00000254480 ANP32BQ92688 251 aaKnown RBP25.06■■□□□ 1.6
SMARCC1-201ENST00000254480 RGL3Q3MIN7 710 aa25.04■■□□□ 1.6
SMARCC1-201ENST00000254480 GOLGA6L2Q8N9W4 650 aaPredicted RBP25■■□□□ 1.59
SMARCC1-201ENST00000254480 PPP1R15AO75807 674 aaPredicted RBP24.93■■□□□ 1.58
SMARCC1-201ENST00000254480 CLIP1P30622 1438 aa24.88■■□□□ 1.57
SMARCC1-201ENST00000254480 DCAF1Q9Y4B6 1507 aa24.88■■□□□ 1.57
SMARCC1-201ENST00000254480 PPM1GO15355 546 aaPredicted RBP24.87■■□□□ 1.57
SMARCC1-201ENST00000254480 EIF4G2P78344 907 aaKnown RBP eCLIP24.86■■□□□ 1.57
SMARCC1-201ENST00000254480 ZCCHC6Q5VYS8 1495 aaKnown RBP24.82■■□□□ 1.56
SMARCC1-201ENST00000254480 ARID4BQ4LE39 1312 aaPredicted RBP24.81■■□□□ 1.56
SMARCC1-201ENST00000254480 MYH16Q9H6N6 1097 aa24.79■■□□□ 1.56
SMARCC1-201ENST00000254480 TPRNQ4KMQ1 711 aa24.76■■□□□ 1.55
SMARCC1-201ENST00000254480 NEUROD2Q15784 382 aa24.76■■□□□ 1.55
SMARCC1-201ENST00000254480 PLEKHD1A6NEE1 506 aa24.76■■□□□ 1.55
SMARCC1-201ENST00000254480 MYO15BQ96JP2 1530 aa24.71■■□□□ 1.55
SMARCC1-201ENST00000254480 HAP1P54257 671 aaPredicted RBP24.71■■□□□ 1.55
SMARCC1-201ENST00000254480 TNNT2P45379 298 aaPredicted RBP24.7■■□□□ 1.54
SMARCC1-201ENST00000254480 LAS1LQ9Y4W2 734 aaKnown RBP24.69■■□□□ 1.54
SMARCC1-201ENST00000254480 LMOD2Q6P5Q4 547 aa24.67■■□□□ 1.54
SMARCC1-201ENST00000254480 CFDP1Q9UEE9 299 aaPredicted RBP24.66■■□□□ 1.54
SMARCC1-201ENST00000254480 SIN3AQ96ST3 1273 aa24.65■■□□□ 1.54
SMARCC1-201ENST00000254480 CEP162Q5TB80 1403 aa24.63■■□□□ 1.53
SMARCC1-201ENST00000254480 CARD11Q9BXL7 1154 aa24.62■■□□□ 1.53
SMARCC1-201ENST00000254480 TAOK2Q9UL54 1235 aa24.62■■□□□ 1.53
SMARCC1-201ENST00000254480 SUPT16HQ9Y5B9 1047 aaKnown RBP24.61■■□□□ 1.53
SMARCC1-201ENST00000254480 KNSTRNQ9Y448 316 aa24.6■■□□□ 1.53
SMARCC1-201ENST00000254480 CC2D1BQ5T0F9 858 aaKnown RBP24.55■■□□□ 1.52
SMARCC1-201ENST00000254480 TULP1O00294 542 aaPredicted RBP24.54■■□□□ 1.52
SMARCC1-201ENST00000254480 NCLP19338 710 aaKnown RBP24.54■■□□□ 1.52
SMARCC1-201ENST00000254480 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
SMARCC1-201ENST00000254480 GOLGA3Q08378 1498 aa24.53■■□□□ 1.52
SMARCC1-201ENST00000254480 CFAP53Q96M91 514 aa24.53■■□□□ 1.52
SMARCC1-201ENST00000254480 FTSJ3Q8IY81 847 aaKnown RBP24.5■■□□□ 1.51
SMARCC1-201ENST00000254480 FRAT1Q92837 279 aaPredicted RBP24.5■■□□□ 1.51
SMARCC1-201ENST00000254480 SOX12O15370 315 aa24.49■■□□□ 1.51
SMARCC1-201ENST00000254480 POGKQ9P215 609 aa24.49■■□□□ 1.51
SMARCC1-201ENST00000254480 MLECQ14165 292 aa24.46■■□□□ 1.51
SMARCC1-201ENST00000254480 RGS3P49796 1198 aa24.46■■□□□ 1.51
SMARCC1-201ENST00000254480 WRNQ14191 1432 aaPredicted RBP eCLIP24.45■■□□□ 1.54e-9■■□□□ 14.1
SMARCC1-201ENST00000254480 U2SURPO15042 1029 aaKnown RBP24.43■■□□□ 1.5
SMARCC1-201ENST00000254480 BECN1Q14457 450 aa24.43■■□□□ 1.5
SMARCC1-201ENST00000254480 CDK11BP21127 795 aaKnown RBP24.42■■□□□ 1.5
SMARCC1-201ENST00000254480 SAFB2Q14151 953 aaKnown RBP eCLIP24.42■■□□□ 1.5
SMARCC1-201ENST00000254480 MAPK8IP3Q9UPT6 1336 aa24.41■■□□□ 1.5
SMARCC1-201ENST00000254480 BAZ1BQ9UIG0 1483 aaKnown RBP24.38■■□□□ 1.49
SMARCC1-201ENST00000254480 CDCA8Q53HL2 280 aa24.36■■□□□ 1.49
SMARCC1-201ENST00000254480 DDRGK1Q96HY6 314 aa24.35■■□□□ 1.49
SMARCC1-201ENST00000254480 DCAF11Q8TEB1 546 aa24.34■■□□□ 1.49
SMARCC1-201ENST00000254480 KIF27Q86VH2 1401 aa24.34■■□□□ 1.49
SMARCC1-201ENST00000254480 NPHP1O15259 732 aa24.33■■□□□ 1.49
SMARCC1-201ENST00000254480 ERCC6Q03468 1493 aa24.33■■□□□ 1.49
SMARCC1-201ENST00000254480 RB1CC1Q8TDY2 1594 aa24.33■■□□□ 1.49
SMARCC1-201ENST00000254480 TRIM44Q96DX7 344 aaPredicted RBP24.33■■□□□ 1.48
SMARCC1-201ENST00000254480 TRHP20396 242 aaPredicted RBP24.31■■□□□ 1.48
SMARCC1-201ENST00000254480 B4GALNT3Q6L9W6 998 aa24.29■■□□□ 1.48
SMARCC1-201ENST00000254480 GOLGA6L22H0YM25 854 aa24.28■■□□□ 1.48
SMARCC1-201ENST00000254480 NUDCQ9Y266 331 aa24.28■■□□□ 1.48
SMARCC1-201ENST00000254480 EIF4G1Q04637 1599 aaKnown RBP24.28■■□□□ 1.48
SMARCC1-201ENST00000254480 FOXD1Q16676 465 aa24.27■■□□□ 1.48
SMARCC1-201ENST00000254480 CASC1Q6TDU7 716 aa24.27■■□□□ 1.48
SMARCC1-201ENST00000254480 OS9Q13438 667 aaPredicted RBP24.26■■□□□ 1.47
SMARCC1-201ENST00000254480 PTMAP06454 111 aaKnown RBP24.25■■□□□ 1.47
SMARCC1-201ENST00000254480 PLCB2Q00722 1185 aa24.24■■□□□ 1.47
SMARCC1-201ENST00000254480 GLIPR1L2Q4G1C9 344 aa24.23■■□□□ 1.47
SMARCC1-201ENST00000254480 NAP1L2Q9ULW6 460 aaPredicted RBP24.23■■□□□ 1.47
SMARCC1-201ENST00000254480 STK26Q9P289 416 aa24.23■■□□□ 1.47
SMARCC1-201ENST00000254480 RTN4Q9NQC3 1192 aaKnown RBP24.22■■□□□ 1.47
SMARCC1-201ENST00000254480 ZRSR1Q15695 479 aaKnown RBP24.22■■□□□ 1.47
SMARCC1-201ENST00000254480 EEA1Q15075 1411 aa24.22■■□□□ 1.47
SMARCC1-201ENST00000254480 SRPK2P78362 688 aaKnown RBP24.22■■□□□ 1.47
SMARCC1-201ENST00000254480 CCNB3Q8WWL7 1395 aa24.21■■□□□ 1.47
SMARCC1-201ENST00000254480 TNIKQ9UKE5 1360 aa24.21■■□□□ 1.47
SMARCC1-201ENST00000254480 CEP164Q9UPV0 1460 aa24.2■■□□□ 1.46
SMARCC1-201ENST00000254480 GGT6Q6P531 493 aa24.18■■□□□ 1.46
SMARCC1-201ENST00000254480 SPRYD3Q8NCJ5 442 aa24.17■■□□□ 1.46
SMARCC1-201ENST00000254480 DNTTIP2Q5QJE6 756 aaKnown RBP24.16■■□□□ 1.46
SMARCC1-201ENST00000254480 CCDC180Q9P1Z9 1646 aa24.16■■□□□ 1.46
SMARCC1-201ENST00000254480 FGD1P98174 961 aa24.14■■□□□ 1.46
SMARCC1-201ENST00000254480 TMF1P82094 1093 aa24.13■■□□□ 1.45
SMARCC1-201ENST00000254480 KCNJ4P48050 445 aa24.13■■□□□ 1.45
SMARCC1-201ENST00000254480 PPP4R2Q9NY27 417 aa24.13■■□□□ 1.45
SMARCC1-201ENST00000254480 APBB1O00213 710 aa24.12■■□□□ 1.45
SMARCC1-201ENST00000254480 HSP90AB1P08238 724 aaKnown RBP24.11■■□□□ 1.45
SMARCC1-201ENST00000254480 SOGA1O94964 1423 aa24.1■■□□□ 1.45
SMARCC1-201ENST00000254480 MORC1Q86VD1 984 aa24.09■■□□□ 1.45
SMARCC1-201ENST00000254480 CUX2O14529 1486 aa24.06■■□□□ 1.44
SMARCC1-201ENST00000254480 HSPA5P11021 654 aaKnown RBP24.05■■□□□ 1.44
SMARCC1-201ENST00000254480 GOLGA2Q08379 1002 aa24.05■■□□□ 1.44
SMARCC1-201ENST00000254480 CARMIL1Q5VZK9 1371 aa24.05■■□□□ 1.44
SMARCC1-201ENST00000254480 PAK3O75914 559 aaPredicted RBP24.03■■□□□ 1.44
SMARCC1-201ENST00000254480 PKD2Q13563 968 aa24.03■■□□□ 1.44
SMARCC1-201ENST00000254480 CECR2Q9BXF3 1484 aa24.02■■□□□ 1.44
SMARCC1-201ENST00000254480 KANK4Q5T7N3 995 aaPredicted RBP24.02■■□□□ 1.44
SMARCC1-201ENST00000254480 ZNF330Q9Y3S2 320 aaPredicted RBP24■■□□□ 1.43
SMARCC1-201ENST00000254480 KANK1Q14678 1352 aa24■■□□□ 1.43
SMARCC1-201ENST00000254480 ANP32EQ9BTT0 268 aa24■■□□□ 1.43
SMARCC1-201ENST00000254480 NUTM2DQ5VT03 806 aaPredicted RBP24■■□□□ 1.43
SMARCC1-201ENST00000254480 NOP58Q9Y2X3 529 aaKnown RBP23.99■■□□□ 1.43
SMARCC1-201ENST00000254480 NAP1L5Q96NT1 182 aaPredicted RBP23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms