RNA–Protein interactions for RNA: ENSMUST00000106865.7

Ccdc47-202, Transcript of Coiled-coil domain-containing protein 47, mousemouse

TSL 1 (best) BASIC

Gene Ccdc47, Length 704 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc47-202ENSMUST00000106865 Ildr2B5TVM2 661 aa13.59□□□□□ -0.23
Ccdc47-202ENSMUST00000106865 Znf703P0CL69 594 aa13.59□□□□□ -0.23
Ccdc47-202ENSMUST00000106865 Skap1Q3UUV5 355 aa13.59□□□□□ -0.23
Ccdc47-202ENSMUST00000106865 GapdhsQ64467 440 aa13.58□□□□□ -0.24
Ccdc47-202ENSMUST00000106865 Taok2Q6ZQ29 1240 aa13.56□□□□□ -0.24
Ccdc47-202ENSMUST00000106865 Pip4p2Q9CZX7 257 aa13.56□□□□□ -0.24
Ccdc47-202ENSMUST00000106865 Zbtb7bQ64321 544 aa13.53□□□□□ -0.24
Ccdc47-202ENSMUST00000106865 Arid3aQ62431 601 aa13.49□□□□□ -0.25
Ccdc47-202ENSMUST00000106865 Clcn6O35454 870 aa13.46□□□□□ -0.25
Ccdc47-202ENSMUST00000106865 Pds5bQ4VA53 1446 aaKnown RBP13.46□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 Gm13697A2AK42 830 aa13.45□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 Pdap1Q3UHX2 181 aaKnown RBP13.45□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 SnphQ80U23 495 aa13.45□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 Atad2Q8CDM1 1040 aa13.45□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 PygbQ8CI94 843 aaKnown RBP13.44□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 Slc24a1Q91WD8 1130 aa13.44□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 Rgl2Q61193 778 aa13.41□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 Cc2d2aQ8CFW7 1633 aa13.4□□□□□ -0.26
Ccdc47-202ENSMUST00000106865 Chrm1P12657 460 aa13.39□□□□□ -0.27
Ccdc47-202ENSMUST00000106865 CrebzfQ91ZR3 358 aa13.37□□□□□ -0.27
Ccdc47-202ENSMUST00000106865 Dnajc5P60904 198 aa13.36□□□□□ -0.27
Ccdc47-202ENSMUST00000106865 Noa1Q9JJG9 693 aaKnown RBP13.35□□□□□ -0.27
Ccdc47-202ENSMUST00000106865 Rsph6aQ8CDR2 708 aa13.33□□□□□ -0.28
Ccdc47-202ENSMUST00000106865 UncxO08934 530 aa13.29□□□□□ -0.28
Ccdc47-202ENSMUST00000106865 Mkrn3Q60764 544 aa13.29□□□□□ -0.28
Ccdc47-202ENSMUST00000106865 Zeb1Q64318 1117 aa13.28□□□□□ -0.28
Ccdc47-202ENSMUST00000106865 Dok7Q18PE0 504 aa13.27□□□□□ -0.29
Ccdc47-202ENSMUST00000106865 Cacnb1Q8R3Z5 597 aa13.26□□□□□ -0.29
Ccdc47-202ENSMUST00000106865 Fam135aQ6NS59 1506 aa13.25□□□□□ -0.29
Ccdc47-202ENSMUST00000106865 Rb1cc1Q9ESK9 1588 aa13.24□□□□□ -0.29
Ccdc47-202ENSMUST00000106865 Atad2bE9Q166 1460 aaKnown RBP13.24□□□□□ -0.29
Ccdc47-202ENSMUST00000106865 Stk3Q9JI10 497 aa13.24□□□□□ -0.29
Ccdc47-202ENSMUST00000106865 P3h3Q8CG70 732 aa13.19□□□□□ -0.3
Ccdc47-202ENSMUST00000106865 Ercc6F8VPZ5 1481 aa13.18□□□□□ -0.3
Ccdc47-202ENSMUST00000106865 Stk25Q9Z2W1 426 aa13.17□□□□□ -0.3
Ccdc47-202ENSMUST00000106865 Map4k4P97820 1233 aaKnown RBP13.11□□□□□ -0.31
Ccdc47-202ENSMUST00000106865 Stk24Q99KH8 431 aa13.1□□□□□ -0.31
Ccdc47-202ENSMUST00000106865 Esf1Q3V1V3 845 aaKnown RBP13.07□□□□□ -0.32
Ccdc47-202ENSMUST00000106865 Smarca2Q6DIC0 1577 aa13.07□□□□□ -0.32
Ccdc47-202ENSMUST00000106865 Pcdhb17Q91VD8 799 aa13.06□□□□□ -0.32
Ccdc47-202ENSMUST00000106865 Baz1bQ9Z277 1479 aa13.03□□□□□ -0.32
Ccdc47-202ENSMUST00000106865 Baz1aO88379 1555 aa13□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Ndufv2Q9D6J6 248 aa13□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Iqgap2Q3UQ44 1575 aa12.98□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Crybg2B7ZCC2 1516 aa12.98□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Mier1Q5UAK0 511 aa12.98□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Cypt1Q8CH20 168 aa12.98□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Wdr62Q3U3T8 1523 aa12.98□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Ccdc180J3QNE4 1664 aa12.97□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Sgip1Q8VD37 806 aa12.97□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Smarca4Q3TKT4 1613 aaKnown RBP12.97□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Arhgef1Q61210 920 aaKnown RBP12.96□□□□□ -0.33
Ccdc47-202ENSMUST00000106865 Znf579Q80VM4 562 aa12.94□□□□□ -0.34
Ccdc47-202ENSMUST00000106865 Frmpd1A2AKB4 1549 aa12.93□□□□□ -0.34
Ccdc47-202ENSMUST00000106865 Zranb1Q7M760 708 aa12.9□□□□□ -0.34
Ccdc47-202ENSMUST00000106865 Phldb1Q6PDH0 1371 aaKnown RBP12.9□□□□□ -0.34
Ccdc47-202ENSMUST00000106865 Tulp1Q9Z273 543 aa12.89□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 Bclaf1Q8K019 919 aaKnown RBP12.88□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 Mrc2Q64449 1479 aa12.87□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 Spryd3E9Q9B3 442 aa12.87□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 E9Q0B3 247 aa12.84□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 ChgaP26339 463 aaKnown RBP12.84□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 Unc13aQ4KUS2 1712 aa12.84□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 Zcchc6Q5BLK4 1491 aaKnown RBP12.84□□□□□ -0.35
Ccdc47-202ENSMUST00000106865 Prim1P20664 417 aa12.82□□□□□ -0.36
Ccdc47-202ENSMUST00000106865 Cnksr2Q80YA9 1032 aa12.82□□□□□ -0.36
Ccdc47-202ENSMUST00000106865 Znf516Q7TSH3 1157 aa12.79□□□□□ -0.36
Ccdc47-202ENSMUST00000106865 1700006A11RikB9EHI3 544 aa12.76□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Ubap1lG3UW59 384 aa12.76□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Gjc2Q8BQU6 440 aa12.75□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Cecr2E9Q2Z1 1453 aa12.74□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Znf710Q3U288 666 aa12.74□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Gm45233A0A0N4SVE0 221 aa12.73□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Erich4Q3UNU4 136 aa12.73□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Map3k10Q66L42 940 aa12.72□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Ric3Q8BPM6 367 aa12.72□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Ubl4bQ9CQ84 188 aa12.71□□□□□ -0.37
Ccdc47-202ENSMUST00000106865 Lrriq1Q0P5X1 1673 aa12.7□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 Pdzrn4E9PUZ9 1014 aa12.7□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 VaspP70460 375 aaKnown RBP12.7□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 Gpr37l1Q99JG2 481 aa12.7□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 Nap1l5Q9JJF0 156 aa12.68□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 Slc7a3P70423 618 aa12.67□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 Foxp4Q9DBY0 795 aaKnown RBP12.67□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 Zbtb38Q3LR78 1197 aa12.65□□□□□ -0.38
Ccdc47-202ENSMUST00000106865 Tox2A2A472 547 aa12.64□□□□□ -0.39
Ccdc47-202ENSMUST00000106865 Kank4Q6P9J5 1016 aa12.64□□□□□ -0.39
Ccdc47-202ENSMUST00000106865 Shroom2A2ALU4 1481 aa12.64□□□□□ -0.39
Ccdc47-202ENSMUST00000106865 Evi5P97366 809 aa12.62□□□□□ -0.39
Ccdc47-202ENSMUST00000106865 Jph4Q80WT0 628 aa12.61□□□□□ -0.39
Ccdc47-202ENSMUST00000106865 Rsf1E9PWW9 1441 aaKnown RBP12.58□□□□□ -0.4
Ccdc47-202ENSMUST00000106865 Speer2E9Q9U2 264 aa12.57□□□□□ -0.4
Ccdc47-202ENSMUST00000106865 Tmem132aQ922P8 1018 aa12.57□□□□□ -0.4
Ccdc47-202ENSMUST00000106865 Col17a1Q07563 1470 aa12.57□□□□□ -0.4
Ccdc47-202ENSMUST00000106865 OsbpQ3B7Z2 805 aa12.55□□□□□ -0.4
Ccdc47-202ENSMUST00000106865 ArntlQ9WTL8 632 aa12.55□□□□□ -0.4
Ccdc47-202ENSMUST00000106865 Fkbp4P30416 458 aa12.52□□□□□ -0.41
Ccdc47-202ENSMUST00000106865 Pak3Q61036 559 aa12.52□□□□□ -0.41
Ccdc47-202ENSMUST00000106865 Eif4g3Q80XI3 1579 aaKnown RBP12.52□□□□□ -0.41
Ccdc47-202ENSMUST00000106865 Actn4P57780 912 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 22,080 RNA–protein pairs in 25.5 ms