RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 UCNP55089 124 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 ZNF415Q09FC8 603 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 MAPK1IP1LQ8NDC0 245 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 IGHV4-38-2P0DP08 117 aa8.57□□□□□ -1.04
CLN3-238ENST00000569430 ZNF22P17026 224 aaPredicted RBP8.57□□□□□ -1.04
CLN3-238ENST00000569430 SMCPP49901 116 aaPredicted RBP8.57□□□□□ -1.04
CLN3-238ENST00000569430 TSPEAR-AS2P59090 65 aa8.57□□□□□ -1.04
CLN3-238ENST00000569430 BAALC-AS2P0C853 105 aa8.57□□□□□ -1.04
CLN3-238ENST00000569430 SIRPDQ9H106 197 aa8.57□□□□□ -1.04
CLN3-238ENST00000569430 PFN2P35080 140 aa8.56□□□□□ -1.04
CLN3-238ENST00000569430 RPL36AP83881 106 aaKnown RBP8.56□□□□□ -1.04
CLN3-238ENST00000569430 RPL36ALQ969Q0 106 aaKnown RBP8.56□□□□□ -1.04
CLN3-238ENST00000569430 K7ENP7 123 aa8.56□□□□□ -1.04
CLN3-238ENST00000569430 LGALS9O00182 355 aa8.56□□□□□ -1.04
CLN3-238ENST00000569430 SVIPQ8NHG7 77 aa8.56□□□□□ -1.04
CLN3-238ENST00000569430 JMJD1CQ15652 2540 aa8.56□□□□□ -1.04
CLN3-238ENST00000569430 ABCA12Q86UK0 2595 aa8.55□□□□□ -1.04
CLN3-238ENST00000569430 PRO0461Q9UI25 63 aa8.55□□□□□ -1.04
CLN3-238ENST00000569430 HRNRQ86YZ3 2850 aaPredicted RBP8.55□□□□□ -1.04
CLN3-238ENST00000569430 COX8CQ7Z4L0 72 aa8.55□□□□□ -1.04
CLN3-238ENST00000569430 STHQ8IWL8 128 aa8.55□□□□□ -1.04
CLN3-238ENST00000569430 UBE2D3P61077 147 aa8.55□□□□□ -1.04
CLN3-238ENST00000569430 UBE2D2P62837 147 aa8.55□□□□□ -1.04
CLN3-238ENST00000569430 CFHR3Q02985 330 aa8.55□□□□□ -1.04
CLN3-238ENST00000569430 UTP20O75691 2785 aaKnown RBP8.55□□□□□ -1.04
CLN3-238ENST00000569430 IGHV4-4A0A075B6R2 117 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 ZNF580Q9UK33 172 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 CITED1Q99966 193 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 A0A0B4J2C4 111 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 TMEM223A0PJW6 202 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 LINC01619G3V211 115 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 MED14OSP0DP75 135 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 POLR2KP53803 58 aaKnown RBP8.54□□□□□ -1.04
CLN3-238ENST00000569430 Q6ZSV7 163 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 TINCRA0A1B0GVN0 87 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 EBI3Q14213 229 aa8.54□□□□□ -1.04
CLN3-238ENST00000569430 MRPL23Q16540 153 aaKnown RBP8.54□□□□□ -1.04
CLN3-238ENST00000569430 IGLV4-3A0A075B6K6 122 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 IGIPA6NJ69 53 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 PROK1P58294 105 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 DEFB136Q30KP8 78 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 Q8N6K4 173 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 IGHV1-58A0A0C4DH39 117 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 H3BT86 120 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 CRLF1O75462 422 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 IGLV4-69A0A075B6H9 119 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 TRGV4A0A0C4DH28 118 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 IGHV4-61A0A0C4DH41 118 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 RBMY1BA6NDE4 496 aaKnown RBP8.53□□□□□ -1.04
CLN3-238ENST00000569430 RBMY1EA6NEQ0 496 aaKnown RBP8.53□□□□□ -1.04
CLN3-238ENST00000569430 RBMY1DP0C7P1 496 aaKnown RBP8.53□□□□□ -1.04
CLN3-238ENST00000569430 RBMY1A1P0DJD3 496 aaKnown RBP8.53□□□□□ -1.04
CLN3-238ENST00000569430 RBMY1CP0DJD4 496 aa8.53□□□□□ -1.04
CLN3-238ENST00000569430 PRM2P04554 102 aa8.52□□□□□ -1.05
CLN3-238ENST00000569430 INAFM2P0DMQ5 153 aa8.52□□□□□ -1.05
CLN3-238ENST00000569430 PSMG3-AS1Q96PY0 264 aa8.52□□□□□ -1.05
CLN3-238ENST00000569430 M0QY20 66 aa8.52□□□□□ -1.05
CLN3-238ENST00000569430 GPHB5Q86YW7 130 aa8.52□□□□□ -1.05
CLN3-238ENST00000569430 IGKV3D-7A0A0C4DH55 119 aa8.52□□□□□ -1.05
CLN3-238ENST00000569430 IGHV4-59P01825 116 aa8.52□□□□□ -1.05
CLN3-238ENST00000569430 ZFHX3Q15911 3703 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 FLNCQ14315 2725 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 CRYGDP07320 174 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 NBL1P41271 181 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 ADORA2A-AS1P86434 159 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 CDKN2A-AS1Q9UH64 79 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 TRBV27A0A0K0K1C4 114 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 MSMBP08118 114 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 CDSNQ15517 529 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 C6orf226Q5I0X4 101 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 Q9HAA7 133 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 SPANXA1Q9NS26 97 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 TMEM263Q8WUH6 116 aaKnown RBP8.51□□□□□ -1.05
CLN3-238ENST00000569430 PEMTQ9UBM1 199 aa8.51□□□□□ -1.05
CLN3-238ENST00000569430 MTORP42345 2549 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 IGHV4OR15-8A0A075B7B6 117 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 A0A087WW49 117 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 GNLYP22749 145 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 APRG1Q8IVJ8 170 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 CSMD2Q7Z408 3487 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 VPS13CQ709C8 3753 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 B4DSR2 109 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 EDN2P20800 178 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 MIAQ16674 131 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 U3KQE9 123 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 A0A0J9YX75 114 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 INSP01308 110 aa8.5□□□□□ -1.05
CLN3-238ENST00000569430 LMO4P61968 165 aa8.49□□□□□ -1.05
CLN3-238ENST00000569430 NXPH4O95158 308 aa8.49□□□□□ -1.05
CLN3-238ENST00000569430 TSHBP01222 138 aa8.49□□□□□ -1.05
CLN3-238ENST00000569430 HERVK_113P63121 156 aa8.49□□□□□ -1.05
CLN3-238ENST00000569430 LRRK2Q5S007 2527 aa8.49□□□□□ -1.05
CLN3-238ENST00000569430 TRBV30A0A0K0K1B3 111 aa8.48□□□□□ -1.05
CLN3-238ENST00000569430 CELSR2Q9HCU4 2923 aa8.48□□□□□ -1.05
CLN3-238ENST00000569430 RPL32P62910 135 aaKnown RBP8.48□□□□□ -1.05
CLN3-238ENST00000569430 IGF2-ASQ6U949 168 aa8.48□□□□□ -1.05
CLN3-238ENST00000569430 H7C423 109 aa8.48□□□□□ -1.05
CLN3-238ENST00000569430 IGHG2P01859 326 aa8.48□□□□□ -1.05
CLN3-238ENST00000569430 RPL35AP18077 110 aaKnown RBP8.48□□□□□ -1.05
CLN3-238ENST00000569430 C10orf99Q6UWK7 81 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms