RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 BRWD1Q9NSI6 2320 aa3.45□□□□□ -1.86
VPS29-210ENST00000552130 PPRC1Q5VV67 1664 aaKnown RBP3.45□□□□□ -1.86
VPS29-210ENST00000552130 ARFGEF3Q5TH69 2177 aa3.45□□□□□ -1.86
VPS29-210ENST00000552130 SHANK1Q9Y566 2161 aa3.45□□□□□ -1.86
VPS29-210ENST00000552130 ABCC1P33527 1531 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 MROH1Q8NDA8 1641 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 MYO3AQ8NEV4 1616 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 TRBV25-1A0A075B6N4 114 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 TRBV6-4A0A1B0GX49 114 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 CLPSL1A2RUU4 121 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 TMEM14DPA8MWL7 114 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 ZNF56Q15929 161 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 DYNLRB1Q9NP97 96 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 CDC42SE2Q9NRR3 84 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 DOCK2Q92608 1830 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 IQGAP3Q86VI3 1631 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 GPR179Q6PRD1 2367 aa3.44□□□□□ -1.86
VPS29-210ENST00000552130 SCN11AQ9UI33 1791 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 COL4A6Q14031 1691 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 INO80Q9ULG1 1556 aaPredicted RBP3.43□□□□□ -1.86
VPS29-210ENST00000552130 NRXN1Q9ULB1 1477 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 IGKV2-28A0A075B6P5 120 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 PPYP01298 95 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 IGKV2D-28P01615 120 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 IGLV6-57P01721 117 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 KRTAP1-4P0C5Y4 121 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 ELOF1P60002 83 aaKnown RBP3.43□□□□□ -1.86
VPS29-210ENST00000552130 TMEM170BQ5T4T1 132 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 NDUFA4L2Q9NRX3 87 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 CCDC180Q9P1Z9 1646 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 KCPQ6ZWJ8 1503 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 RTTNQ86VV8 2226 aa3.43□□□□□ -1.86
VPS29-210ENST00000552130 COL16A1Q07092 1604 aaPredicted RBP3.42□□□□□ -1.86
VPS29-210ENST00000552130 TRBV6-7A0A0A0MS04 114 aa3.42□□□□□ -1.86
VPS29-210ENST00000552130 SMIM13P0DJ93 91 aa3.42□□□□□ -1.86
VPS29-210ENST00000552130 PDE6GP18545 87 aa3.42□□□□□ -1.86
VPS29-210ENST00000552130 PI4KAP42356 2102 aa3.42□□□□□ -1.86
VPS29-210ENST00000552130 DUOX2Q9NRD8 1548 aa3.42□□□□□ -1.86
VPS29-210ENST00000552130 DOCK11Q5JSL3 2073 aa3.42□□□□□ -1.86
VPS29-210ENST00000552130 IQSEC2Q5JU85 1478 aa3.41□□□□□ -1.86
VPS29-210ENST00000552130 HIGD1CA8MV81 97 aa3.41□□□□□ -1.86
VPS29-210ENST00000552130 JMJD7-PLA2G4BH0Y9G9 81 aa3.41□□□□□ -1.86
VPS29-210ENST00000552130 IGLV3-1P01715 115 aa3.41□□□□□ -1.86
VPS29-210ENST00000552130 SSBP1Q04837 148 aaKnown RBP3.41□□□□□ -1.86
VPS29-210ENST00000552130 C20orf197Q8N268 126 aa3.41□□□□□ -1.86
VPS29-210ENST00000552130 LENEPQ9Y5L5 61 aa3.41□□□□□ -1.86
VPS29-210ENST00000552130 PRRC2BQ5JSZ5 2229 aaKnown RBP3.41□□□□□ -1.86
VPS29-210ENST00000552130 TOP2BQ02880 1626 aa3.41□□□□□ -1.86
VPS29-210ENST00000552130 CEP192Q8TEP8 1941 aa3.4□□□□□ -1.86
VPS29-210ENST00000552130 ABCA4P78363 2273 aa3.4□□□□□ -1.86
VPS29-210ENST00000552130 A0A1W2PNN7 141 aa3.4□□□□□ -1.87
VPS29-210ENST00000552130 HMGN4O00479 90 aa3.4□□□□□ -1.87
VPS29-210ENST00000552130 MYO5CQ9NQX4 1742 aa3.4□□□□□ -1.87
VPS29-210ENST00000552130 DLG5Q8TDM6 1919 aa3.4□□□□□ -1.87
VPS29-210ENST00000552130 SPTBP11277 2137 aa3.4□□□□□ -1.87
VPS29-210ENST00000552130 ABCC2Q92887 1545 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 MED12Q93074 2177 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 CR1P17927 2039 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 LOC285095A0A1B0GVY8 99 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 C7orf77A4D0Y5 90 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 ZNF815PA8K554 130 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 PPP1R17O96001 155 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 KRTAP13-2Q52LG2 175 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 C10orf55Q5SWW7 151 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 KRTAP5-5Q701N2 237 aaPredicted RBP3.39□□□□□ -1.87
VPS29-210ENST00000552130 TMEM14BQ9NUH8 114 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 KLK9Q9UKQ9 250 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 V9GYH0 126 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 ZNF142P52746 1687 aaPredicted RBP3.39□□□□□ -1.87
VPS29-210ENST00000552130 KNDC1Q76NI1 1749 aa3.39□□□□□ -1.87
VPS29-210ENST00000552130 SETBP1Q9Y6X0 1596 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 STRCP1A6NGW2 1772 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 TMEM131LA2VDJ0 1609 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 A0A087WWC5 75 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 LOC101927531A0A1B0GV80 90 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 F8WEM9 126 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 H3BRN7 92 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 HMGN2P05204 90 aaKnown RBP3.38□□□□□ -1.87
VPS29-210ENST00000552130 GNGT1P63211 74 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 PSMG4Q5JS54 123 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 TVP23CQ96ET8 276 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 UBR1Q8IWV7 1749 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 ABCA10Q8WWZ4 1543 aa3.38□□□□□ -1.87
VPS29-210ENST00000552130 MADDQ8WXG6 1647 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 FREM1Q5H8C1 2179 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 UMAD1C9J7I0 102 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 RNASE3P12724 160 aaKnown RBP3.37□□□□□ -1.87
VPS29-210ENST00000552130 SPAG11BQ08648 103 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 PRR9Q5T870 116 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 XAF1Q6GPH4 301 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 SPAG11AQ6PDA7 123 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 WFDC10AQ9H1F0 79 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 NEXMIFQ5QGS0 1516 aa3.37□□□□□ -1.87
VPS29-210ENST00000552130 ALPK2Q86TB3 2170 aa3.36□□□□□ -1.87
VPS29-210ENST00000552130 LRRC9Q6ZRR7 1453 aa3.36□□□□□ -1.87
VPS29-210ENST00000552130 CUX1P39880 1505 aa3.36□□□□□ -1.87
VPS29-210ENST00000552130 C10orf142B7Z368 130 aa3.36□□□□□ -1.87
VPS29-210ENST00000552130 CCL3L1P16619 93 aa3.36□□□□□ -1.87
VPS29-210ENST00000552130 KIF21AQ7Z4S6 1674 aa3.36□□□□□ -1.87
VPS29-210ENST00000552130 PRRC2AP48634 2157 aaKnown RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 140 ms