RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 KLK12Q9UKR0 248 aa9.36□□□□□ -0.91
COL4A6-209ENST00000545689 TP73-AS1Q9UF72 201 aa9.36□□□□□ -0.91
COL4A6-209ENST00000545689 TRBV6-4A0A1B0GX49 114 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 IBA57-AS1B1ANH7 110 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 TNRC6BQ9UPQ9 1833 aaKnown RBP9.35□□□□□ -0.91
COL4A6-209ENST00000545689 TRBV30A0A0K0K1B3 111 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 NDUFB1O75438 58 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 NRACQ8N912 160 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 CNFNQ9BYD5 112 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 MRAPQ8TCY5 172 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 SS18L2Q9UHA2 77 aa9.35□□□□□ -0.91
COL4A6-209ENST00000545689 PCDH15Q96QU1 1955 aa9.34□□□□□ -0.91
COL4A6-209ENST00000545689 PIK3CD-AS1Q5SR53 167 aa9.34□□□□□ -0.91
COL4A6-209ENST00000545689 CEP192Q8TEP8 1941 aa9.34□□□□□ -0.91
COL4A6-209ENST00000545689 KLLNB2CW77 178 aa9.34□□□□□ -0.91
COL4A6-209ENST00000545689 MP68P56378 58 aa9.34□□□□□ -0.91
COL4A6-209ENST00000545689 REG3AQ06141 175 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 ESM1Q9NQ30 184 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 CACNA1BQ00975 2339 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 J3KT08 172 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 IGLV1-40P01703 118 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 HIGD2BQ4VC39 106 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 CDKN2A-AS1Q9UH64 79 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 ABCA4P78363 2273 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 ATP5EP2Q5VTU8 51 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 FREM1Q5H8C1 2179 aa9.33□□□□□ -0.92
COL4A6-209ENST00000545689 LINC00308Q8TCZ7 52 aa9.32□□□□□ -0.92
COL4A6-209ENST00000545689 C14orf177Q52M58 125 aa9.32□□□□□ -0.92
COL4A6-209ENST00000545689 FAM222AQ5U5X8 452 aa9.32□□□□□ -0.92
COL4A6-209ENST00000545689 C9orf85Q96MD7 179 aa9.32□□□□□ -0.92
COL4A6-209ENST00000545689 CHD3Q12873 2000 aaKnown RBP9.32□□□□□ -0.92
COL4A6-209ENST00000545689 MAPKAPK5-AS1Q8N8E1 139 aa9.32□□□□□ -0.92
COL4A6-209ENST00000545689 PTH2Q96A98 100 aa9.32□□□□□ -0.92
COL4A6-209ENST00000545689 ATG2AQ2TAZ0 1938 aa9.32□□□□□ -0.92
COL4A6-209ENST00000545689 CACNA1HO95180 2353 aa9.31□□□□□ -0.92
COL4A6-209ENST00000545689 IGKV2D-26A0A0A0MRZ7 120 aa9.31□□□□□ -0.92
COL4A6-209ENST00000545689 ZNF702PQ9H963 129 aa9.31□□□□□ -0.92
COL4A6-209ENST00000545689 RNASE3P12724 160 aaKnown RBP9.31□□□□□ -0.92
COL4A6-209ENST00000545689 KLK5Q9Y337 293 aaPredicted RBP9.31□□□□□ -0.92
COL4A6-209ENST00000545689 NDUFS5O43920 106 aa9.31□□□□□ -0.92
COL4A6-209ENST00000545689 MRPS36P82909 103 aaKnown RBP9.31□□□□□ -0.92
COL4A6-209ENST00000545689 TRBV6-8A0A0A6YYG3 113 aa9.3□□□□□ -0.92
COL4A6-209ENST00000545689 TSHBP01222 138 aa9.3□□□□□ -0.92
COL4A6-209ENST00000545689 Q6ZSV7 163 aa9.3□□□□□ -0.92
COL4A6-209ENST00000545689 UBE2AP49459 152 aa9.3□□□□□ -0.92
COL4A6-209ENST00000545689 CHCHD10Q8WYQ3 142 aaPredicted RBP9.3□□□□□ -0.92
COL4A6-209ENST00000545689 COL5A1P20908 1838 aaPredicted RBP9.3□□□□□ -0.92
COL4A6-209ENST00000545689 MIFP14174 115 aa9.3□□□□□ -0.92
COL4A6-209ENST00000545689 LINC00269Q8N2A0 174 aa9.3□□□□□ -0.92
COL4A6-209ENST00000545689 C2orf91Q6ZV80 131 aa9.3□□□□□ -0.92
COL4A6-209ENST00000545689 DEFB4AO15263 64 aa9.29□□□□□ -0.92
COL4A6-209ENST00000545689 PCNX3Q9H6A9 2034 aa9.29□□□□□ -0.92
COL4A6-209ENST00000545689 POLR2KP53803 58 aaKnown RBP9.29□□□□□ -0.92
COL4A6-209ENST00000545689 C14orf132Q9NPU4 83 aa9.29□□□□□ -0.92
COL4A6-209ENST00000545689 TRAV26-1A0A087WT03 109 aa9.29□□□□□ -0.92
COL4A6-209ENST00000545689 CRIP2P52943 208 aaPredicted RBP9.29□□□□□ -0.92
COL4A6-209ENST00000545689 PTPRSQ13332 1948 aa9.28□□□□□ -0.92
COL4A6-209ENST00000545689 IL17DQ8TAD2 202 aa9.28□□□□□ -0.92
COL4A6-209ENST00000545689 MRPS12O15235 138 aaKnown RBP9.28□□□□□ -0.92
COL4A6-209ENST00000545689 MRGPRG-AS1Q2M3A8 158 aa9.28□□□□□ -0.92
COL4A6-209ENST00000545689 C11orf21Q9P2W6 132 aa9.28□□□□□ -0.92
COL4A6-209ENST00000545689 C11orf45Q8TAV5 145 aa9.27□□□□□ -0.92
COL4A6-209ENST00000545689 MED12LQ86YW9 2145 aa9.27□□□□□ -0.92
COL4A6-209ENST00000545689 PCNX1Q96RV3 2341 aa9.27□□□□□ -0.93
COL4A6-209ENST00000545689 TRIAP1O43715 76 aa9.27□□□□□ -0.93
COL4A6-209ENST00000545689 PRR9Q5T870 116 aa9.27□□□□□ -0.93
COL4A6-209ENST00000545689 BRI3O95415 125 aa9.27□□□□□ -0.93
COL4A6-209ENST00000545689 IGHV4-28A0A0C4DH34 117 aa9.26□□□□□ -0.93
COL4A6-209ENST00000545689 COX8CQ7Z4L0 72 aa9.26□□□□□ -0.93
COL4A6-209ENST00000545689 DCANP1Q8TF63 244 aa9.26□□□□□ -0.93
COL4A6-209ENST00000545689 UBE2D4Q9Y2X8 147 aa9.25□□□□□ -0.93
COL4A6-209ENST00000545689 NDUFV3P56181 108 aaKnown RBP9.25□□□□□ -0.93
COL4A6-209ENST00000545689 MUC7Q8TAX7 377 aa9.25□□□□□ -0.93
COL4A6-209ENST00000545689 B9D2Q9BPU9 175 aa9.25□□□□□ -0.93
COL4A6-209ENST00000545689 SPTAN1Q13813 2472 aaKnown RBP9.25□□□□□ -0.93
COL4A6-209ENST00000545689 TEX49A0A1B0GTD5 131 aa9.25□□□□□ -0.93
COL4A6-209ENST00000545689 CRYGDP07320 174 aa9.24□□□□□ -0.93
COL4A6-209ENST00000545689 ZNF580Q9UK33 172 aa9.24□□□□□ -0.93
COL4A6-209ENST00000545689 WFDC11Q8NEX6 87 aa9.24□□□□□ -0.93
COL4A6-209ENST00000545689 UPK3BQ9BT76 320 aa9.24□□□□□ -0.93
COL4A6-209ENST00000545689 UQCRQO14949 82 aa9.23□□□□□ -0.93
COL4A6-209ENST00000545689 MT-ATP8P03928 68 aa9.23□□□□□ -0.93
COL4A6-209ENST00000545689 LINC00310P59036 64 aa9.23□□□□□ -0.93
COL4A6-209ENST00000545689 NDUFC2O95298 119 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 CACNA1GO43497 2377 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 UBE2D1P51668 147 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 ARHGAP21Q5T5U3 1957 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 C10orf99Q6UWK7 81 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 CD164L2Q6UWJ8 174 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 Q8N976 141 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 KIR2DL5BQ8NHK3 375 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 IMUPQ9GZP8 106 aa9.22□□□□□ -0.93
COL4A6-209ENST00000545689 HILS1P60008 231 aa9.21□□□□□ -0.93
COL4A6-209ENST00000545689 BPY2O14599 106 aa9.21□□□□□ -0.93
COL4A6-209ENST00000545689 PROK1P58294 105 aa9.21□□□□□ -0.93
COL4A6-209ENST00000545689 WFDC9Q8NEX5 89 aa9.21□□□□□ -0.93
COL4A6-209ENST00000545689 LST1O00453 97 aa9.21□□□□□ -0.94
COL4A6-209ENST00000545689 COX17Q14061 63 aa9.21□□□□□ -0.94
COL4A6-209ENST00000545689 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.2□□□□□ -0.942e-8■■■■■ 31.6
COL4A6-209ENST00000545689 SPATA25Q9BR10 227 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 210.8 ms