RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 ERVK-7P63135 1459 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 MLH3Q9UHC1 1453 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 SHANK2Q9UPX8 1470 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 TRBV6-7A0A0A0MS04 114 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 LOC285095A0A1B0GVY8 99 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 CLPSL1A2RUU4 121 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 SMIM11AP58511 58 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 FXYD4P59646 89 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 DEFB103AP81534 67 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 Q5VV11 94 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 SFTA2Q6UW10 78 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 ZNF625Q96I27 306 aaPredicted RBP1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 ST20Q9HBF5 79 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 NDUFA4L2Q9NRX3 87 aa1.84□□□□□ -2.11
HMGB1P38-201ENST00000490557 NWD2Q9ULI1 1742 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 PXDNQ92626 1479 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 OTOGLQ3ZCN5 2332 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 MYO18AQ92614 2054 aaKnown RBP1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 IGKV2-40A0A087WW87 121 aaPredicted RBP1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 LOC110117498A0A087WWA1 95 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 IGKV2-29A2NJV5 120 aaPredicted RBP1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 H7BZZ5 65 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 IGKV2D-40P01614 121 aaPredicted RBP1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 SPAG11BQ08648 103 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 FXYD3Q14802 87 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 KRTAP13-4Q3LI77 160 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 TMEM170BQ5T4T1 132 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 GDF5OSQ5U4N7 250 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 XAF1Q6GPH4 301 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 SPAG11AQ6PDA7 123 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 DEFB132Q7Z7B7 95 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 V9GYH0 126 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 MYH8P13535 1937 aa1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 EDC4Q6P2E9 1401 aaKnown RBP1.83□□□□□ -2.12
HMGB1P38-201ENST00000490557 ABCA4P78363 2273 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 PCDH15Q96QU1 1955 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 IGKV3D-7A0A0C4DH55 119 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 IGKV3OR2-268A0A0C4DH90 116 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 NBDYA0A0U1RRE5 68 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 SMIM31A0A1B0GVY4 71 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 TMEM14DPA8MWL7 114 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 HMGN4O00479 90 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 HCRTO43612 131 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 PMCHL1Q16048 86 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 ETDBQ3ZM63 59 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 VMO1Q7Z5L0 202 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 BPESC1Q9GZL8 116 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 CYSTM1Q9H1C7 97 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 V9GYV3 84 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 ESPL1Q14674 2120 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 SIP14410 1827 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 PATJQ8NI35 1801 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 WNK3Q9BYP7 1800 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 ATP10BO94823 1461 aa1.82□□□□□ -2.12
HMGB1P38-201ENST00000490557 CR1P17927 2039 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 SHROOM2Q13796 1616 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 COL5A3P25940 1745 aaPredicted RBP1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 KANTRA0A1W2PQU2 76 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 FXYD1O00168 92 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 SMCO4Q9NRQ5 59 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 CDC42SE2Q9NRR3 84 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 HIGD1BQ9P298 99 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 R4GMQ9 66 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 SBF2Q86WG5 1849 aa1.81□□□□□ -2.12
HMGB1P38-201ENST00000490557 PTPRDP23468 1912 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 CASP8AP2Q9UKL3 1982 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 A0A1W2PPM0 123 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 BCE1O60756 84 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 KLKP1Q107X0 134 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 Q86TA4 180 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 C5orf56Q8N8D9 126 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 BLMP54132 1417 aaPredicted RBP1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 EPRSP07814 1512 aaKnown RBP1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 ERICH3Q5RHP9 1530 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 UNC13BO14795 1591 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 ADGRB2O60241 1585 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 ZNF142P52746 1687 aaPredicted RBP1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 CTTNBP2Q8WZ74 1663 aa1.8□□□□□ -2.12
HMGB1P38-201ENST00000490557 PRRC2BQ5JSZ5 2229 aaKnown RBP1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 TRBV25-1A0A075B6N4 114 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 ZNF815PA8K554 130 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 SNRPFP62306 86 aaKnown RBP1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 NMSQ5H8A3 153 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 LINC00208Q96KT6 92 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 FANCAO15360 1455 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 CHD1O14646 1710 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 MON2Q7Z3U7 1717 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 PI4KAP42356 2102 aa1.79□□□□□ -2.12
HMGB1P38-201ENST00000490557 LRRC37A3O60309 1634 aa1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 SAA2P0DJI9 122 aaPredicted RBP1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 DEFA5Q01523 94 aa1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 WFDC2Q14508 124 aa1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 PCOTHQ58A44 107 aa1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 Q6ZQY7 126 aa1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 FAM223AQ8IWN6 122 aa1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 ARL2-SNX15V9GYD0 113 aa1.78□□□□□ -2.12
HMGB1P38-201ENST00000490557 INTS1Q8N201 2190 aaKnown RBP1.78□□□□□ -2.13
HMGB1P38-201ENST00000490557 MED12Q93074 2177 aa1.78□□□□□ -2.13
HMGB1P38-201ENST00000490557 CCDC141Q6ZP82 1450 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms