RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 HERC1Q15751 4861 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 PIN1P1O15428 100 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 SPINK8P0C7L1 97 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 HAMPP81172 84 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 SPAG11BQ08648 103 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 KRTAP19-7Q3SYF9 63 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 MAFIPQ8WZ33 124 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 CNFNQ9BYD5 112 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 TPT1P8Q9HAU6 139 aa-0.28□□□□□ -2.45
CD46-216ENST00000490278 GVINP1Q7Z2Y8 2422 aa-0.29□□□□□ -2.46
CD46-216ENST00000490278 RPS25P62851 125 aaKnown RBP-0.29□□□□□ -2.46
CD46-216ENST00000490278 ALX1Q15699 326 aa-0.29□□□□□ -2.46
CD46-216ENST00000490278 SMIM21Q3B7S5 101 aa-0.29□□□□□ -2.46
CD46-216ENST00000490278 S100A7L2Q5SY68 101 aa-0.29□□□□□ -2.46
CD46-216ENST00000490278 BAGE3Q86Y29 109 aa-0.29□□□□□ -2.46
CD46-216ENST00000490278 KCNRGQ8N5I3 272 aa-0.29□□□□□ -2.46
CD46-216ENST00000490278 LRRC37A3O60309 1634 aa-0.29□□□□□ -2.46
CD46-216ENST00000490278 PRM1P04553 51 aa-0.3□□□□□ -2.46
CD46-216ENST00000490278 COPZ1P61923 177 aa-0.3□□□□□ -2.46
CD46-216ENST00000490278 CCL8P80075 99 aa-0.3□□□□□ -2.46
CD46-216ENST00000490278 PRO0255Q9UI72 69 aa-0.3□□□□□ -2.46
CD46-216ENST00000490278 LINC00312Q9Y6C7 94 aa-0.3□□□□□ -2.46
CD46-216ENST00000490278 NBEAL1Q6ZS30 2694 aa-0.3□□□□□ -2.46
CD46-216ENST00000490278 VWFP04275 2813 aa-0.3□□□□□ -2.46
CD46-216ENST00000490278 PDZD2O15018 2839 aa-0.31□□□□□ -2.46
CD46-216ENST00000490278 FAT1Q14517 4588 aa-0.31□□□□□ -2.46
CD46-216ENST00000490278 DEFB109BQ30KR1 87 aa-0.31□□□□□ -2.46
CD46-216ENST00000490278 TCEAL4Q96EI5 215 aa-0.31□□□□□ -2.46
CD46-216ENST00000490278 SPTA1P02549 2419 aa-0.31□□□□□ -2.46
CD46-216ENST00000490278 NF1P21359 2839 aa-0.31□□□□□ -2.46
CD46-216ENST00000490278 PRKDCP78527 4128 aaKnown RBP-0.31□□□□□ -2.46
CD46-216ENST00000490278 USF3Q68DE3 2245 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 IFT172Q9UG01 1749 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 UNC13AQ9UPW8 1703 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 SETXQ7Z333 2677 aaKnown RBP-0.32□□□□□ -2.46
CD46-216ENST00000490278 FXYD6-FXYD2A0A087WZ82 144 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 M0R3E3 92 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 SDF2Q99470 211 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 SEC11CQ9BY50 192 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 TMEM191AQ9H0A3 160 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 NPVFQ9HCQ7 196 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 ATRQ13535 2644 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 BIVM-ERCC5R4GMW8 1640 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 CNOT1A5YKK6 2376 aaKnown RBP-0.32□□□□□ -2.46
CD46-216ENST00000490278 PKHD1P08F94 4074 aa-0.32□□□□□ -2.46
CD46-216ENST00000490278 CREBBPQ92793 2442 aa-0.33□□□□□ -2.46
CD46-216ENST00000490278 CFAP126Q5VTH2 177 aa-0.33□□□□□ -2.46
CD46-216ENST00000490278 ZNF609O15014 1411 aa-0.33□□□□□ -2.46
CD46-216ENST00000490278 CASKIN1Q8WXD9 1431 aa-0.33□□□□□ -2.46
CD46-216ENST00000490278 FLNBO75369 2602 aaKnown RBP-0.34□□□□□ -2.46
CD46-216ENST00000490278 SVEP1Q4LDE5 3571 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 URB1O60287 2271 aaKnown RBP-0.34□□□□□ -2.46
CD46-216ENST00000490278 NBPF19A0A087WUL8 3843 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 CHD8Q9HCK8 2581 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 ZNF518AQ6AHZ1 1483 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 IFT140Q96RY7 1462 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 LOC105371267A0A1B0GV96 52 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 SPRR2DP22532 72 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 SMCO1Q147U7 214 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 FLGP20930 4061 aaPredicted RBP-0.34□□□□□ -2.46
CD46-216ENST00000490278 TGP01266 2768 aa-0.34□□□□□ -2.46
CD46-216ENST00000490278 NHSL1Q5SYE7 1610 aa-0.35□□□□□ -2.46
CD46-216ENST00000490278 HERC2O95714 4834 aa-0.35□□□□□ -2.46
CD46-216ENST00000490278 LAMA5O15230 3695 aa-0.35□□□□□ -2.46
CD46-216ENST00000490278 TRAV22A0A0B4J277 110 aa-0.35□□□□□ -2.47
CD46-216ENST00000490278 CCL18P55774 89 aa-0.35□□□□□ -2.47
CD46-216ENST00000490278 WFDC2Q14508 124 aa-0.35□□□□□ -2.47
CD46-216ENST00000490278 SCN3BQ9NY72 215 aa-0.35□□□□□ -2.47
CD46-216ENST00000490278 CCDC167Q9P0B6 97 aa-0.35□□□□□ -2.47
CD46-216ENST00000490278 STAB2Q8WWQ8 2551 aa-0.35□□□□□ -2.47
CD46-216ENST00000490278 MYO7BQ6PIF6 2116 aa-0.35□□□□□ -2.47
CD46-216ENST00000490278 PLXNB2O15031 1838 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 STARD9Q9P2P6 4700 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 LOC730098B7Z3J9 87 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 SIX6O95475 246 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 KRTAP19-8Q3LI54 63 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 Q8IZM0 81 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 DPH3Q96FX2 82 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 PFDN5Q99471 154 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 FXYD6Q9H0Q3 95 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 PXDNQ92626 1479 aa-0.36□□□□□ -2.47
CD46-216ENST00000490278 DNAH6Q9C0G6 4158 aa-0.37□□□□□ -2.47
CD46-216ENST00000490278 MYOM3Q5VTT5 1437 aa-0.37□□□□□ -2.47
CD46-216ENST00000490278 EP300Q09472 2414 aaPredicted RBP-0.37□□□□□ -2.47
CD46-216ENST00000490278 NWD2Q9ULI1 1742 aa-0.37□□□□□ -2.47
CD46-216ENST00000490278 PPP1R17O96001 155 aa-0.37□□□□□ -2.47
CD46-216ENST00000490278 SPRR1AP35321 89 aa-0.37□□□□□ -2.47
CD46-216ENST00000490278 R4GMQ9 66 aa-0.37□□□□□ -2.47
CD46-216ENST00000490278 PPRC1Q5VV67 1664 aaKnown RBP-0.37□□□□□ -2.47
CD46-216ENST00000490278 AKAP9Q99996 3911 aa-0.38□□□□□ -2.47
CD46-216ENST00000490278 HCG22E2RYF7 251 aa-0.38□□□□□ -2.47
CD46-216ENST00000490278 K7EQZ3 153 aa-0.38□□□□□ -2.47
CD46-216ENST00000490278 KRTAP20-2Q3LI61 65 aa-0.38□□□□□ -2.47
CD46-216ENST00000490278 SPAARA0A1B0GVQ0 90 aa-0.39□□□□□ -2.47
CD46-216ENST00000490278 BCE1O60756 84 aa-0.39□□□□□ -2.47
CD46-216ENST00000490278 SPAG11AQ6PDA7 123 aa-0.39□□□□□ -2.47
CD46-216ENST00000490278 SPCS1Q9Y6A9 102 aa-0.39□□□□□ -2.47
CD46-216ENST00000490278 MXRA5Q9NR99 2828 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 GRIN2AQ12879 1464 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 USH2AO75445 5202 aa-0.4□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms