RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 GRNP28799 593 aaKnown RBP2.58□□□□□ -2
SYNE1-212ENST00000423061 LY6EQ16553 131 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 ZNF833PQ6ZTB9 187 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 ABCA2Q9BZC7 2435 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 TRGV2A0A075B6R0 118 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 GNRH2O43555 120 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 MIFP14174 115 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 B3GALT5-AS1P59052 145 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 MINOS1Q5TGZ0 78 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 TMEM61Q8N0U2 210 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 Q9H8V8 135 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 MINOS1-NBL1R4GNA1 71 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 TMEM256-PLSCR3K7ERE1 68 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 PINLYPA6NC86 204 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 THAP8Q8NA92 274 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 LRRK2Q5S007 2527 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 DOPEY1Q5JWR5 2465 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 TRAV10A0A0B4J240 114 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 CD59P13987 128 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 AVPP01185 164 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 IGHV3-11P01762 117 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 NRACQ8N912 160 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 NDUFA4L2Q9NRX3 87 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 CD164Q04900 197 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 C7orf69Q9H7B7 122 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 ITLN2Q8WWU7 325 aaPredicted RBP2.57□□□□□ -2
SYNE1-212ENST00000423061 TIMM17AQ99595 171 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 IGHG3P01860 377 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 PLAC8L1A1L4L8 177 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 CCL19Q99731 98 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 SEM1Q6ZVN7 128 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 LST1O00453 97 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 SDHAF1A6NFY7 115 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 VMO1Q7Z5L0 202 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 PSMG3-AS1Q96PY0 264 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 ZNF876PQ49A33 203 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 ZNF80P51504 273 aaPredicted RBP2.57□□□□□ -2
SYNE1-212ENST00000423061 USMG5Q96IX5 58 aa2.57□□□□□ -2
SYNE1-212ENST00000423061 SPTBN4Q9H254 2564 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 ADAMTS20P59510 1910 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 C11orf45Q8TAV5 145 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 IGKV1-17P01599 117 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 ATP5EP2Q5VTU8 51 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 DCANP1Q8TF63 244 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 LINC00846Q9NV44 126 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 ZNF580Q9UK33 172 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 ORMDL1Q9P0S3 153 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 IGHV3OR16-10A0A075B7F0 116 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 TRAV13-2A0A0B4J235 113 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 PRR15LQ9BU68 103 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 TRGV4A0A0C4DH28 118 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 HIVEP3Q5T1R4 2406 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 IGKV1D-37A0A075B6S9 117 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 C1orf229Q6ZS94 237 aaPredicted RBP2.56□□□□□ -2
SYNE1-212ENST00000423061 USP9YO00507 2555 aaPredicted RBP2.56□□□□□ -2
SYNE1-212ENST00000423061 TRAV7A0A075B6U4 112 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 IGHV3-30-3P0DP02 117 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 C17orf82Q86X59 251 aaPredicted RBP2.56□□□□□ -2
SYNE1-212ENST00000423061 COX7B2Q8TF08 81 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 IGF1P05019 195 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 USP9XQ93008 2570 aaPredicted RBP2.56□□□□□ -2
SYNE1-212ENST00000423061 TET2Q6N021 2002 aaPredicted RBP2.56□□□□□ -2
SYNE1-212ENST00000423061 TRBV27A0A0K0K1C4 114 aa2.56□□□□□ -2
SYNE1-212ENST00000423061 MIAQ16674 131 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 CFHR3Q02985 330 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 LINC01560Q8TB33 94 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 CLPSL1A2RUU4 121 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 ABCA12Q86UK0 2595 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 PKD1L2Q7Z442 2459 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 RNASE6Q93091 150 aaKnown RBP2.55□□□□□ -2
SYNE1-212ENST00000423061 EIF4EBP1Q13541 118 aaPredicted RBP2.55□□□□□ -2
SYNE1-212ENST00000423061 IGFL2Q6UWQ7 119 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 RBM12B-AS1Q9P1G2 102 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 JMJD1CQ15652 2540 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 PTPRSQ13332 1948 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 DEFB1P60022 68 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 PROP1O75360 226 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 MIR7-3HGQ8N6C7 128 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 LECT2O14960 151 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 HTN3P15516 51 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 C11orf21Q9P2W6 132 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 SRCAPQ6ZRS2 3230 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 Q0VFX4 171 aa2.55□□□□□ -2
SYNE1-212ENST00000423061 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.55□□□□□ -2
SYNE1-212ENST00000423061 MDFIQ99750 246 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 A0A1B0GW54 56 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 MTORP42345 2549 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 DSCAMO60469 2012 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 APOC4P55056 127 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 C6orf223Q8N319 242 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 CHD8Q9HCK8 2581 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 A6NED7 52 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 COX6B1P14854 86 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 PRRC2AP48634 2157 aaKnown RBP2.54□□□□□ -2
SYNE1-212ENST00000423061 TRGV1A0A0A0MS02 117 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 DEFB121Q5J5C9 76 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 IGHV1-69DA0A0B4J2H0 117 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 IGHV3-16A0A0C4DH30 117 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 LENEPQ9Y5L5 61 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 ZNF503-AS2A6NEH8 195 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms