RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 IGLV4-3A0A075B6K6 122 aa11.19□□□□□ -0.62
CHD4-201ENST00000357008 CRIP1P50238 77 aa11.19□□□□□ -0.62
CHD4-201ENST00000357008 ATP5EP2Q5VTU8 51 aa11.19□□□□□ -0.62
CHD4-201ENST00000357008 C20orf197Q8N268 126 aa11.18□□□□□ -0.62
CHD4-201ENST00000357008 BRK1Q8WUW1 75 aa11.18□□□□□ -0.62
CHD4-201ENST00000357008 FAM110AQ9BQ89 295 aa11.18□□□□□ -0.62
CHD4-201ENST00000357008 WISP2O76076 250 aa11.18□□□□□ -0.62
CHD4-201ENST00000357008 SDIM1Q6ZPB5 146 aa11.18□□□□□ -0.62
CHD4-201ENST00000357008 DSCAML1Q8TD84 2053 aa11.18□□□□□ -0.62
CHD4-201ENST00000357008 F8W735 103 aaPredicted RBP11.18□□□□□ -0.62
CHD4-201ENST00000357008 LINC00467Q9BRT7 94 aa11.18□□□□□ -0.62
CHD4-201ENST00000357008 RNF185Q96GF1 192 aa11.17□□□□□ -0.62
CHD4-201ENST00000357008 LINC01548A6NM66 108 aa11.17□□□□□ -0.62
CHD4-201ENST00000357008 TRIAP1O43715 76 aa11.17□□□□□ -0.62
CHD4-201ENST00000357008 LINC00308Q8TCZ7 52 aa11.17□□□□□ -0.62
CHD4-201ENST00000357008 IGF1P05019 195 aa11.17□□□□□ -0.62
CHD4-201ENST00000357008 K7EQG2 157 aa11.16□□□□□ -0.62
CHD4-201ENST00000357008 TNFRSF13BO14836 293 aaPredicted RBP11.16□□□□□ -0.62
CHD4-201ENST00000357008 DEFB4AO15263 64 aa11.16□□□□□ -0.62
CHD4-201ENST00000357008 Q6ZTI0 123 aa11.16□□□□□ -0.62
CHD4-201ENST00000357008 C3orf22Q8N5N4 141 aa11.16□□□□□ -0.62
CHD4-201ENST00000357008 H7C423 109 aa11.16□□□□□ -0.62
CHD4-201ENST00000357008 WNK1Q9H4A3 2382 aa11.15□□□□□ -0.62
CHD4-201ENST00000357008 NRGNQ92686 78 aa11.15□□□□□ -0.62
CHD4-201ENST00000357008 LMO4P61968 165 aa11.15□□□□□ -0.62
CHD4-201ENST00000357008 IBA57-AS1B1ANH7 110 aa11.15□□□□□ -0.63
CHD4-201ENST00000357008 C20orf173Q96LM9 149 aa11.15□□□□□ -0.63
CHD4-201ENST00000357008 FAM236DA0A1B0GTK5 79 aa11.14□□□□□ -0.63
CHD4-201ENST00000357008 FAM236CP0DP71 79 aa11.14□□□□□ -0.63
CHD4-201ENST00000357008 ANKHD1Q8IWZ3 2542 aaKnown RBP11.14□□□□□ -0.63
CHD4-201ENST00000357008 INSL3P51460 131 aa11.14□□□□□ -0.63
CHD4-201ENST00000357008 M0QY20 66 aa11.14□□□□□ -0.63
CHD4-201ENST00000357008 FSTL3O95633 263 aa11.14□□□□□ -0.63
CHD4-201ENST00000357008 C2orf91Q6ZV80 131 aa11.14□□□□□ -0.63
CHD4-201ENST00000357008 ZFAND3Q9H8U3 227 aa11.14□□□□□ -0.63
CHD4-201ENST00000357008 LINC00269Q8N2A0 174 aa11.13□□□□□ -0.63
CHD4-201ENST00000357008 H0Y9J4 135 aa11.13□□□□□ -0.63
CHD4-201ENST00000357008 REG3AQ06141 175 aa11.13□□□□□ -0.63
CHD4-201ENST00000357008 IGLV2-11P01706 119 aa11.13□□□□□ -0.63
CHD4-201ENST00000357008 SPG11Q96JI7 2443 aa11.13□□□□□ -0.63
CHD4-201ENST00000357008 ZFHX2Q9C0A1 2572 aaPredicted RBP11.12□□□□□ -0.63
CHD4-201ENST00000357008 EBI3Q14213 229 aa11.12□□□□□ -0.63
CHD4-201ENST00000357008 SMAD5-AS1Q9Y6J3 95 aa11.12□□□□□ -0.63
CHD4-201ENST00000357008 TRBV27A0A0K0K1C4 114 aa11.12□□□□□ -0.63
CHD4-201ENST00000357008 KIF26AQ9ULI4 1882 aaPredicted RBP11.11□□□□□ -0.63
CHD4-201ENST00000357008 PYGO1Q9Y3Y4 419 aa11.11□□□□□ -0.63
CHD4-201ENST00000357008 Q8NA96 180 aa11.11□□□□□ -0.63
CHD4-201ENST00000357008 TRBV6-5A0A0K0K1A5 114 aa11.11□□□□□ -0.63
CHD4-201ENST00000357008 MRPS12O15235 138 aaKnown RBP11.11□□□□□ -0.63
CHD4-201ENST00000357008 ENHOQ6UWT2 76 aa11.11□□□□□ -0.63
CHD4-201ENST00000357008 CHCHD10Q8WYQ3 142 aaPredicted RBP11.1□□□□□ -0.63
CHD4-201ENST00000357008 PIK3CD-AS1Q5SR53 167 aa11.1□□□□□ -0.63
CHD4-201ENST00000357008 IMUPQ9GZP8 106 aa11.1□□□□□ -0.63
CHD4-201ENST00000357008 LY6LH3BQJ8 138 aa11.1□□□□□ -0.63
CHD4-201ENST00000357008 TIMM17BO60830 172 aa11.1□□□□□ -0.63
CHD4-201ENST00000357008 SLPIP03973 132 aa11.1□□□□□ -0.63
CHD4-201ENST00000357008 ACACBO00763 2458 aa11.09□□□□□ -0.63
CHD4-201ENST00000357008 CFAP126Q5VTH2 177 aa11.09□□□□□ -0.63
CHD4-201ENST00000357008 NRACQ8N912 160 aa11.08□□□□□ -0.64
CHD4-201ENST00000357008 SVIPQ8NHG7 77 aa11.08□□□□□ -0.64
CHD4-201ENST00000357008 PLXNB1O43157 2135 aa11.08□□□□□ -0.64
CHD4-201ENST00000357008 MED12LQ86YW9 2145 aa11.08□□□□□ -0.64
CHD4-201ENST00000357008 DEFB114Q30KQ6 69 aa11.08□□□□□ -0.64
CHD4-201ENST00000357008 B9D2Q9BPU9 175 aa11.08□□□□□ -0.64
CHD4-201ENST00000357008 SMIM9A6NGZ8 99 aa11.08□□□□□ -0.64
CHD4-201ENST00000357008 WFDC11Q8NEX6 87 aa11.07□□□□□ -0.64
CHD4-201ENST00000357008 FAM222AQ5U5X8 452 aa11.07□□□□□ -0.64
CHD4-201ENST00000357008 ADAMTS9Q9P2N4 1935 aa11.07□□□□□ -0.64
CHD4-201ENST00000357008 LYRM9A8MSI8 78 aa11.07□□□□□ -0.64
CHD4-201ENST00000357008 ZNF106Q9H2Y7 1883 aaKnown RBP11.06□□□□□ -0.64
CHD4-201ENST00000357008 MPLKIPQ8TAP9 179 aa11.06□□□□□ -0.64
CHD4-201ENST00000357008 DNAJC9-AS1A6NH13 148 aa11.06□□□□□ -0.64
CHD4-201ENST00000357008 NDUFC2-KCTD14E9PQ53 114 aa11.06□□□□□ -0.64
CHD4-201ENST00000357008 C4orf48Q5BLP8 95 aa11.06□□□□□ -0.64
CHD4-201ENST00000357008 BDP1A6H8Y1 2624 aa11.06□□□□□ -0.64
CHD4-201ENST00000357008 SERP2Q8N6R1 65 aa11.05□□□□□ -0.64
CHD4-201ENST00000357008 TRBV6-8A0A0A6YYG3 113 aa11.05□□□□□ -0.64
CHD4-201ENST00000357008 LST1O00453 97 aa11.05□□□□□ -0.64
CHD4-201ENST00000357008 SCXQ7RTU7 201 aa11.05□□□□□ -0.64
CHD4-201ENST00000357008 PRR14LQ5THK1 2151 aa11.05□□□□□ -0.64
CHD4-201ENST00000357008 SEC61GP60059 68 aa11.05□□□□□ -0.64
CHD4-201ENST00000357008 TRBV6-4A0A1B0GX49 114 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 NDUFA7O95182 113 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 IGKV4-1P06312 121 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 C22orf34Q6ZV56 151 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 HIGD2AQ9BW72 106 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 FAM240AA0A1B0GVK7 77 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 C6orf99Q4VX62 202 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 TMEM131Q92545 1883 aa11.04□□□□□ -0.64
CHD4-201ENST00000357008 TSHBP01222 138 aa11.03□□□□□ -0.64
CHD4-201ENST00000357008 Q6YL49 198 aa11.03□□□□□ -0.64
CHD4-201ENST00000357008 SPTSSBQ8NFR3 76 aa11.03□□□□□ -0.64
CHD4-201ENST00000357008 RNASE3P12724 160 aaKnown RBP11.03□□□□□ -0.64
CHD4-201ENST00000357008 C14orf177Q52M58 125 aa11.03□□□□□ -0.64
CHD4-201ENST00000357008 ALPK3Q96L96 1907 aa11.02□□□□□ -0.64
CHD4-201ENST00000357008 NDUFC1O43677 76 aa11.02□□□□□ -0.64
CHD4-201ENST00000357008 USP17L23D6RBM5 183 aa11.02□□□□□ -0.65
CHD4-201ENST00000357008 PROK1P58294 105 aa11.02□□□□□ -0.65
CHD4-201ENST00000357008 IGKV2-24A0A0C4DH68 120 aa11.02□□□□□ -0.65
CHD4-201ENST00000357008 POLR2KP53803 58 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms