RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 GAGE12FP0CL80 117 aa15.21■□□□□ 0.02
ATG4D-201ENST00000309469 GAGE12GP0CL81 117 aa15.21■□□□□ 0.02
ATG4D-201ENST00000309469 GAGE12IP0CL82 117 aa15.21■□□□□ 0.02
ATG4D-201ENST00000309469 PMVKQ15126 192 aa15.21■□□□□ 0.02
ATG4D-201ENST00000309469 ATRQ13535 2644 aa15.2■□□□□ 0.02
ATG4D-201ENST00000309469 SIVA1O15304 175 aa15.2■□□□□ 0.02
ATG4D-201ENST00000309469 WIPF1O43516 503 aa15.2■□□□□ 0.02
ATG4D-201ENST00000309469 CST9LQ9H4G1 147 aa15.19■□□□□ 0.02
ATG4D-201ENST00000309469 TRGV2A0A075B6R0 118 aa15.19■□□□□ 0.02
ATG4D-201ENST00000309469 ORAOV1Q8WV07 137 aa15.18■□□□□ 0.02
ATG4D-201ENST00000309469 TRBV10-1A0A0K0K1A3 114 aa15.17■□□□□ 0.02
ATG4D-201ENST00000309469 K7EQD1 137 aa15.17■□□□□ 0.02
ATG4D-201ENST00000309469 CIDEAO60543 219 aa15.17■□□□□ 0.02
ATG4D-201ENST00000309469 NPSP0C0P6 89 aa15.17■□□□□ 0.02
ATG4D-201ENST00000309469 TMEM97Q5BJF2 176 aa15.17■□□□□ 0.02
ATG4D-201ENST00000309469 ZNRF2Q8NHG8 242 aa15.17■□□□□ 0.02
ATG4D-201ENST00000309469 PHLDA1Q8WV24 401 aaPredicted RBP15.17■□□□□ 0.02
ATG4D-201ENST00000309469 TRBV7-3A0A075B6L6 115 aa15.16■□□□□ 0.02
ATG4D-201ENST00000309469 IGHV3-38A0A0C4DH36 116 aa15.16■□□□□ 0.02
ATG4D-201ENST00000309469 EMP1P54849 157 aa15.16■□□□□ 0.02
ATG4D-201ENST00000309469 SLC25A29Q8N8R3 303 aa15.16■□□□□ 0.02
ATG4D-201ENST00000309469 KIR2DL5BQ8NHK3 375 aa15.16■□□□□ 0.02
ATG4D-201ENST00000309469 OPRPNQ99935 248 aaPredicted RBP15.16■□□□□ 0.02
ATG4D-201ENST00000309469 X6R8D5 127 aa15.16■□□□□ 0.02
ATG4D-201ENST00000309469 COTL1Q14019 142 aa15.15■□□□□ 0.02
ATG4D-201ENST00000309469 CHCHD7Q9BUK0 85 aa15.15■□□□□ 0.02
ATG4D-201ENST00000309469 SMIM9A6NGZ8 99 aa15.15■□□□□ 0.02
ATG4D-201ENST00000309469 TTTY13Q9BZ97 58 aa15.15■□□□□ 0.02
ATG4D-201ENST00000309469 PYGO1Q9Y3Y4 419 aa15.15■□□□□ 0.02
ATG4D-201ENST00000309469 IGLV4-69A0A075B6H9 119 aa15.14■□□□□ 0.01
ATG4D-201ENST00000309469 APOC4P55056 127 aa15.14■□□□□ 0.01
ATG4D-201ENST00000309469 RPL36AP83881 106 aaKnown RBP15.14■□□□□ 0.01
ATG4D-201ENST00000309469 RPL36ALQ969Q0 106 aaKnown RBP15.14■□□□□ 0.01
ATG4D-201ENST00000309469 PAPPA-AS1Q5QFB9 102 aa15.13■□□□□ 0.01
ATG4D-201ENST00000309469 IGLV4-3A0A075B6K6 122 aa15.13■□□□□ 0.01
ATG4D-201ENST00000309469 HSD52Q0P140 79 aa15.13■□□□□ 0.01
ATG4D-201ENST00000309469 C3orf56Q8N813 242 aa15.13■□□□□ 0.01
ATG4D-201ENST00000309469 C11orf86A6NJI1 115 aa15.11■□□□□ 0.01
ATG4D-201ENST00000309469 HIGD1BQ9P298 99 aa15.11■□□□□ 0.01
ATG4D-201ENST00000309469 NOTCH3Q9UM47 2321 aa15.11■□□□□ 0.01
ATG4D-201ENST00000309469 TRAV8-6A0A0B4J262 113 aa15.11■□□□□ 0.01
ATG4D-201ENST00000309469 TRBV6-4A0A1B0GX49 114 aa15.11■□□□□ 0.01
ATG4D-201ENST00000309469 VCX2Q9H322 139 aa15.11■□□□□ 0.01
ATG4D-201ENST00000309469 TRGV4A0A0C4DH28 118 aa15.1■□□□□ 0.01
ATG4D-201ENST00000309469 SHISA2Q6UWI4 295 aa15.1■□□□□ 0.01
ATG4D-201ENST00000309469 DAZ4Q86SG3 579 aaKnown RBP15.1■□□□□ 0.01
ATG4D-201ENST00000309469 DAZ3Q9NR90 486 aaKnown RBP15.1■□□□□ 0.01
ATG4D-201ENST00000309469 COX11Q9Y6N1 276 aa15.1■□□□□ 0.01
ATG4D-201ENST00000309469 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.09■□□□□ 0.01
ATG4D-201ENST00000309469 IGKV2-29A2NJV5 120 aaPredicted RBP15.09■□□□□ 0.01
ATG4D-201ENST00000309469 GAGE12JA6NER3 117 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 UBE2D3P61077 147 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 UBE2D2P62837 147 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 SEC11AP67812 179 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 GAGE4Q13068 117 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 GAGE5Q13069 117 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 GAGE13Q4V321 117 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 PRIMA1Q86XR5 153 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 LINC00612Q8N6U2 182 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 TRBV25-1A0A075B6N4 114 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 FHL2Q14192 279 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 DEFB135Q30KP9 77 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 CEMP1Q6PRD7 247 aaPredicted RBP15.09■□□□□ 0.01
ATG4D-201ENST00000309469 Q6ZVH6 145 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 OR11H2Q8NH07 326 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 FAM104AQ969W3 186 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 SPANXA1Q9NS26 97 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 UBE2D4Q9Y2X8 147 aa15.09■□□□□ 0.01
ATG4D-201ENST00000309469 MAPKAPK5-AS1Q8N8E1 139 aa15.08■□□□□ 0
ATG4D-201ENST00000309469 BAHCC1Q9P281 2608 aa15.08■□□□□ 0
ATG4D-201ENST00000309469 E9PLD3 99 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 DEFB130BP0DP73 79 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 DEFB130AP0DP74 79 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 CRYBA4P53673 196 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 CHAC1Q9BUX1 264 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 IGHV4-30-4P0DP06 118 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 OXLD1Q5BKU9 147 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 NFE4Q86UQ8 179 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 AMELXQ99217 191 aa15.07■□□□□ 0
ATG4D-201ENST00000309469 TAX1BP3O14907 124 aa15.06■□□□□ 0
ATG4D-201ENST00000309469 PRADC1Q9BSG0 188 aa15.05■□□□□ -0
ATG4D-201ENST00000309469 LOC100131303A0A0U1RQF7 123 aa15.04■□□□□ -0
ATG4D-201ENST00000309469 HERVK_113P61574 105 aa15.04■□□□□ -0
ATG4D-201ENST00000309469 NTM-AS1Q6ZSK4 140 aa15.04■□□□□ -0
ATG4D-201ENST00000309469 FBN1P35555 2871 aaKnown RBP15.04■□□□□ -0
ATG4D-201ENST00000309469 A6NDN8 102 aa15.04■□□□□ -0
ATG4D-201ENST00000309469 UBE2V1Q13404 147 aa15.04■□□□□ -0
ATG4D-201ENST00000309469 TMEM170BQ5T4T1 132 aa15.04■□□□□ -0
ATG4D-201ENST00000309469 MYMXA0A1B0GTQ4 84 aa15.03■□□□□ -0
ATG4D-201ENST00000309469 TIMM21Q9BVV7 248 aa15.03■□□□□ -0
ATG4D-201ENST00000309469 A0A0J9YXV3 536 aa15.02■□□□□ -0
ATG4D-201ENST00000309469 LYRM9A8MSI8 78 aa15.02■□□□□ -0
ATG4D-201ENST00000309469 FAM222AQ5U5X8 452 aa15.02■□□□□ -0
ATG4D-201ENST00000309469 TRRAPQ9Y4A5 3859 aa15.02□□□□□ -0.01
ATG4D-201ENST00000309469 KRTAP10-11P60412 298 aa15.02□□□□□ -0.01
ATG4D-201ENST00000309469 RNASE13Q5GAN3 156 aaKnown RBP15.02□□□□□ -0.01
ATG4D-201ENST00000309469 GTSF1LQ9H1H1 148 aa15.02□□□□□ -0.01
ATG4D-201ENST00000309469 IGHV4-28A0A0C4DH34 117 aa15.01□□□□□ -0.01
ATG4D-201ENST00000309469 PTTG1IPP53801 180 aa15□□□□□ -0.01
ATG4D-201ENST00000309469 MRPS36P82909 103 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms