RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 TRGV11A0A075B6L2 103 aa10.86□□□□□ -0.67
CCNF-201ENST00000293968 IGHV4-30-2A0A087WSY4 118 aa10.85□□□□□ -0.67
CCNF-201ENST00000293968 ICOSQ9Y6W8 199 aa10.85□□□□□ -0.67
CCNF-201ENST00000293968 IGHV3OR16-12A0A075B7B8 117 aa10.85□□□□□ -0.67
CCNF-201ENST00000293968 ADAMTSL4-AS1Q5T5F5 129 aa10.85□□□□□ -0.67
CCNF-201ENST00000293968 DEFB131AP59861 70 aa10.84□□□□□ -0.67
CCNF-201ENST00000293968 MAPK1IP1LQ8NDC0 245 aa10.84□□□□□ -0.67
CCNF-201ENST00000293968 Q9UF83 564 aa10.84□□□□□ -0.67
CCNF-201ENST00000293968 SBSPONQ8IVN8 264 aa10.84□□□□□ -0.67
CCNF-201ENST00000293968 ABCA2Q9BZC7 2435 aa10.84□□□□□ -0.67
CCNF-201ENST00000293968 RPL13AP40429 203 aaKnown RBP10.84□□□□□ -0.67
CCNF-201ENST00000293968 IGLV1-40P01703 118 aa10.83□□□□□ -0.68
CCNF-201ENST00000293968 MSMBP08118 114 aa10.83□□□□□ -0.68
CCNF-201ENST00000293968 GAGE5Q13069 117 aa10.83□□□□□ -0.68
CCNF-201ENST00000293968 GAGE6Q13070 117 aa10.83□□□□□ -0.68
CCNF-201ENST00000293968 K7EMT4 169 aa10.83□□□□□ -0.68
CCNF-201ENST00000293968 PRRC2AP48634 2157 aaKnown RBP10.83□□□□□ -0.68
CCNF-201ENST00000293968 TRBV10-2A0A0K0K1G8 114 aa10.83□□□□□ -0.68
CCNF-201ENST00000293968 DEFB136Q30KP8 78 aa10.82□□□□□ -0.68
CCNF-201ENST00000293968 ZFHX3Q15911 3703 aa10.82□□□□□ -0.68
CCNF-201ENST00000293968 AVPP01185 164 aa10.82□□□□□ -0.68
CCNF-201ENST00000293968 IFITM1P13164 125 aa10.82□□□□□ -0.68
CCNF-201ENST00000293968 LINC01587Q99440 93 aa10.81□□□□□ -0.68
CCNF-201ENST00000293968 K7EQG2 157 aa10.81□□□□□ -0.68
CCNF-201ENST00000293968 IGHV1-58A0A0C4DH39 117 aa10.81□□□□□ -0.68
CCNF-201ENST00000293968 NDUFV3P56181 108 aaKnown RBP10.81□□□□□ -0.68
CCNF-201ENST00000293968 DEFB112Q30KQ8 113 aa10.8□□□□□ -0.68
CCNF-201ENST00000293968 NRGNQ92686 78 aa10.8□□□□□ -0.68
CCNF-201ENST00000293968 POLQO75417 2590 aa10.8□□□□□ -0.68
CCNF-201ENST00000293968 HIST2H2BDQ6DRA6 164 aa10.8□□□□□ -0.68
CCNF-201ENST00000293968 HOXD3P31249 432 aaPredicted RBP10.8□□□□□ -0.68
CCNF-201ENST00000293968 C10orf105Q8TEF2 133 aa10.8□□□□□ -0.68
CCNF-201ENST00000293968 MYO9AB2RTY4 2548 aa10.79□□□□□ -0.68
CCNF-201ENST00000293968 USP9XQ93008 2570 aaPredicted RBP10.79□□□□□ -0.68
CCNF-201ENST00000293968 CCDC179H3BU77 68 aa10.79□□□□□ -0.68
CCNF-201ENST00000293968 MEIG1Q5JSS6 88 aa10.79□□□□□ -0.68
CCNF-201ENST00000293968 WNK1Q9H4A3 2382 aa10.79□□□□□ -0.68
CCNF-201ENST00000293968 TRBV30A0A0K0K1B3 111 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 H7C423 109 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 CIRBPQ14011 172 aaKnown RBP10.78□□□□□ -0.68
CCNF-201ENST00000293968 LINC00467Q9BRT7 94 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 GAGE12JA6NER3 117 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 GAGE7O76087 117 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 GAGE12FP0CL80 117 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 GAGE12GP0CL81 117 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 GAGE12IP0CL82 117 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 RBMY1A1P0DJD3 496 aaKnown RBP10.78□□□□□ -0.68
CCNF-201ENST00000293968 RBMY1CP0DJD4 496 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 GAGE4Q13068 117 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 RBMY1FQ15415 496 aaKnown RBP10.78□□□□□ -0.68
CCNF-201ENST00000293968 MIAQ16674 131 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 C3orf56Q8N813 242 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 FAM208BQ5VWN6 2430 aa10.78□□□□□ -0.68
CCNF-201ENST00000293968 PSMB8P28062 276 aa10.77□□□□□ -0.68
CCNF-201ENST00000293968 Q6ZSN1 163 aa10.77□□□□□ -0.68
CCNF-201ENST00000293968 VSIG2Q96IQ7 327 aa10.77□□□□□ -0.68
CCNF-201ENST00000293968 CITED1Q99966 193 aa10.77□□□□□ -0.68
CCNF-201ENST00000293968 CDKN2A-AS1Q9UH64 79 aa10.77□□□□□ -0.68
CCNF-201ENST00000293968 ACACBO00763 2458 aa10.77□□□□□ -0.69
CCNF-201ENST00000293968 TRAV13-1A0A0B4J241 112 aa10.77□□□□□ -0.69
CCNF-201ENST00000293968 YAE1D1Q9NRH1 226 aa10.77□□□□□ -0.69
CCNF-201ENST00000293968 IGHV3-53P01767 116 aa10.76□□□□□ -0.69
CCNF-201ENST00000293968 SLURP1P55000 103 aa10.76□□□□□ -0.69
CCNF-201ENST00000293968 MRPS36P82909 103 aaKnown RBP10.76□□□□□ -0.69
CCNF-201ENST00000293968 CACNA1AO00555 2505 aa10.76□□□□□ -0.69
CCNF-201ENST00000293968 Q9H8V8 135 aa10.76□□□□□ -0.69
CCNF-201ENST00000293968 B4DSR2 109 aa10.75□□□□□ -0.69
CCNF-201ENST00000293968 ODF3Q96PU9 254 aa10.75□□□□□ -0.69
CCNF-201ENST00000293968 IGKV3OR2-268A0A0C4DH90 116 aa10.75□□□□□ -0.69
CCNF-201ENST00000293968 DYNLRB2Q8TF09 96 aa10.75□□□□□ -0.69
CCNF-201ENST00000293968 LITAFQ99732 161 aa10.75□□□□□ -0.69
CCNF-201ENST00000293968 ZNF415Q09FC8 603 aa10.74□□□□□ -0.69
CCNF-201ENST00000293968 TMEM61Q8N0U2 210 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 UBE2E2Q96LR5 201 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 PYGO1Q9Y3Y4 419 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 NHLRC4P0CG21 123 aaPredicted RBP10.73□□□□□ -0.69
CCNF-201ENST00000293968 CFHR3Q02985 330 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 C18orf65Q6ZTR6 163 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 XCL2Q9UBD3 114 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 UBE2D4Q9Y2X8 147 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 TLN2Q9Y4G6 2542 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 TINCRA0A1B0GVN0 87 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 SETD2Q9BYW2 2564 aaPredicted RBP10.73□□□□□ -0.69
CCNF-201ENST00000293968 SPANXA1Q9NS26 97 aa10.73□□□□□ -0.69
CCNF-201ENST00000293968 PTPN13Q12923 2485 aa10.72□□□□□ -0.69
CCNF-201ENST00000293968 NDUFA7O95182 113 aa10.72□□□□□ -0.69
CCNF-201ENST00000293968 BRI3O95415 125 aa10.72□□□□□ -0.69
CCNF-201ENST00000293968 PRIMA1Q86XR5 153 aa10.72□□□□□ -0.69
CCNF-201ENST00000293968 CHCHD5Q9BSY4 110 aa10.72□□□□□ -0.69
CCNF-201ENST00000293968 CHCHD7Q9BUK0 85 aa10.72□□□□□ -0.69
CCNF-201ENST00000293968 SPANXDQ9BXN6 97 aa10.71□□□□□ -0.69
CCNF-201ENST00000293968 SPANXCQ9NY87 97 aa10.71□□□□□ -0.69
CCNF-201ENST00000293968 CENPEQ02224 2701 aa10.71□□□□□ -0.69
CCNF-201ENST00000293968 TRGV1A0A0A0MS02 117 aa10.71□□□□□ -0.69
CCNF-201ENST00000293968 H3BT86 120 aa10.71□□□□□ -0.69
CCNF-201ENST00000293968 TMEM101Q96IK0 257 aa10.7□□□□□ -0.7
CCNF-201ENST00000293968 LST1O00453 97 aa10.7□□□□□ -0.7
CCNF-201ENST00000293968 C11orf44Q8N8P7 122 aa10.7□□□□□ -0.7
CCNF-201ENST00000293968 SMIM20Q8N5G0 67 aa10.7□□□□□ -0.7
CCNF-201ENST00000293968 COX6A2Q02221 97 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms