RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 ODF3Q96PU9 254 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 ATRXP46100 2492 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 COL6A6A6NMZ7 2263 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 AKAP6Q13023 2319 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 IGHV3-16A0A0C4DH30 117 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 IGHV4-39P01824 125 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 RHOHQ15669 191 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 M0QY20 66 aa11.04□□□□□ -0.64
SMARCA4-219ENST00000592604 LGALS3P17931 250 aaKnown RBP11.04□□□□□ -0.64
SMARCA4-219ENST00000592604 BLCAPP62952 87 aa11.04□□□□□ -0.64
SMARCA4-219ENST00000592604 FHL3Q13643 280 aa11.04□□□□□ -0.64
SMARCA4-219ENST00000592604 Q6ZUT4 128 aa11.04□□□□□ -0.64
SMARCA4-219ENST00000592604 H3BUX3 64 aa11.04□□□□□ -0.64
SMARCA4-219ENST00000592604 TMEM223A0PJW6 202 aa11.03□□□□□ -0.64
SMARCA4-219ENST00000592604 LEPROTO15243 131 aa11.03□□□□□ -0.64
SMARCA4-219ENST00000592604 IGHV4-38-2P0DP08 117 aa11.03□□□□□ -0.64
SMARCA4-219ENST00000592604 A8MWV9 139 aa11.03□□□□□ -0.64
SMARCA4-219ENST00000592604 EDN2P20800 178 aa11.03□□□□□ -0.64
SMARCA4-219ENST00000592604 CFHR3Q02985 330 aa11.03□□□□□ -0.64
SMARCA4-219ENST00000592604 ZNF256Q9Y2P7 627 aaPredicted RBP11.02□□□□□ -0.64
SMARCA4-219ENST00000592604 P0DMU3 169 aa11.02□□□□□ -0.65
SMARCA4-219ENST00000592604 FAM231AP0DMU4 169 aa11.02□□□□□ -0.65
SMARCA4-219ENST00000592604 FAM231CP0DMU5 169 aa11.02□□□□□ -0.65
SMARCA4-219ENST00000592604 FAM74A4Q5TZK3 123 aa11.02□□□□□ -0.65
SMARCA4-219ENST00000592604 MDFICQ9P1T7 246 aa11.02□□□□□ -0.65
SMARCA4-219ENST00000592604 ZFAND6Q6FIF0 208 aa11.02□□□□□ -0.65
SMARCA4-219ENST00000592604 SPTAN1Q13813 2472 aaKnown RBP11.01□□□□□ -0.65
SMARCA4-219ENST00000592604 TRPT1Q86TN4 253 aaKnown RBP11.01□□□□□ -0.65
SMARCA4-219ENST00000592604 IGHV4-61A0A0C4DH41 118 aa11.01□□□□□ -0.65
SMARCA4-219ENST00000592604 SCGB1C2P0DMR2 95 aa11.01□□□□□ -0.65
SMARCA4-219ENST00000592604 TEX29Q8N6K0 151 aa11.01□□□□□ -0.65
SMARCA4-219ENST00000592604 C20orf203Q8NBC4 194 aa11.01□□□□□ -0.65
SMARCA4-219ENST00000592604 OPRPNQ99935 248 aaPredicted RBP11.01□□□□□ -0.65
SMARCA4-219ENST00000592604 ZNF56Q15929 161 aa11□□□□□ -0.65
SMARCA4-219ENST00000592604 A0A0J9YX75 114 aa11□□□□□ -0.65
SMARCA4-219ENST00000592604 EIF4EBP3O60516 100 aaPredicted RBP11□□□□□ -0.65
SMARCA4-219ENST00000592604 IGHV3-33P01772 117 aa11□□□□□ -0.65
SMARCA4-219ENST00000592604 TMEM263Q8WUH6 116 aaKnown RBP11□□□□□ -0.65
SMARCA4-219ENST00000592604 A0A0B4J2C4 111 aa10.99□□□□□ -0.65
SMARCA4-219ENST00000592604 ZNF22P17026 224 aaPredicted RBP10.99□□□□□ -0.65
SMARCA4-219ENST00000592604 Q8N1Y9 231 aa10.99□□□□□ -0.65
SMARCA4-219ENST00000592604 ZNF580Q9UK33 172 aa10.99□□□□□ -0.65
SMARCA4-219ENST00000592604 IGF2RP11717 2491 aa10.99□□□□□ -0.65
SMARCA4-219ENST00000592604 RHODO00212 210 aa10.99□□□□□ -0.65
SMARCA4-219ENST00000592604 ZNF688P0C7X2 276 aa10.99□□□□□ -0.65
SMARCA4-219ENST00000592604 C19orf84I3L1E1 186 aa10.98□□□□□ -0.65
SMARCA4-219ENST00000592604 ANKRD29Q8N6D5 301 aa10.98□□□□□ -0.65
SMARCA4-219ENST00000592604 DUX5Q96PT3 197 aa10.98□□□□□ -0.65
SMARCA4-219ENST00000592604 IGHV1OR15-1A0A075B7D0 117 aa10.98□□□□□ -0.65
SMARCA4-219ENST00000592604 I3L3M4 83 aa10.98□□□□□ -0.65
SMARCA4-219ENST00000592604 TRAV12-2A0A075B6T6 113 aa10.97□□□□□ -0.65
SMARCA4-219ENST00000592604 C3orf56Q8N813 242 aa10.97□□□□□ -0.65
SMARCA4-219ENST00000592604 IGLV4-3A0A075B6K6 122 aa10.97□□□□□ -0.65
SMARCA4-219ENST00000592604 F8WDY8 70 aa10.97□□□□□ -0.65
SMARCA4-219ENST00000592604 MUSTN1Q8IVN3 82 aa10.97□□□□□ -0.65
SMARCA4-219ENST00000592604 C10orf105Q8TEF2 133 aa10.97□□□□□ -0.65
SMARCA4-219ENST00000592604 M0R2P5 195 aa10.96□□□□□ -0.65
SMARCA4-219ENST00000592604 SLC25A20O43772 301 aa10.96□□□□□ -0.65
SMARCA4-219ENST00000592604 A0A0J9YXV3 536 aa10.96□□□□□ -0.66
SMARCA4-219ENST00000592604 TMEM262E9PQX1 116 aa10.96□□□□□ -0.66
SMARCA4-219ENST00000592604 K7EQG2 157 aa10.96□□□□□ -0.66
SMARCA4-219ENST00000592604 PSMB8P28062 276 aa10.96□□□□□ -0.66
SMARCA4-219ENST00000592604 SNRPD3P62318 126 aaKnown RBP10.96□□□□□ -0.66
SMARCA4-219ENST00000592604 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 TRAV2A0A0B4J234 112 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 LOC107984640A0A0U1RRK4 108 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 RNF152Q8N8N0 203 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 MRPL23Q16540 153 aaKnown RBP10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 LINC01600Q96MT4 127 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 CELSR1Q9NYQ6 3014 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 F5H768 121 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 EDA2RQ9HAV5 297 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 PYGO1Q9Y3Y4 419 aa10.95□□□□□ -0.66
SMARCA4-219ENST00000592604 C9JAW5 83 aa10.94□□□□□ -0.66
SMARCA4-219ENST00000592604 IGKV3-20P01619 116 aa10.94□□□□□ -0.66
SMARCA4-219ENST00000592604 NDUFV3P56181 108 aaKnown RBP10.94□□□□□ -0.66
SMARCA4-219ENST00000592604 MEIG1Q5JSS6 88 aa10.94□□□□□ -0.66
SMARCA4-219ENST00000592604 A0A0J9YXY3 114 aa10.94□□□□□ -0.66
SMARCA4-219ENST00000592604 SPINK13Q1W4C9 94 aa10.94□□□□□ -0.66
SMARCA4-219ENST00000592604 IGHV3-64A0A075B6Q5 118 aa10.93□□□□□ -0.66
SMARCA4-219ENST00000592604 FAM104AQ969W3 186 aa10.93□□□□□ -0.66
SMARCA4-219ENST00000592604 TRGV11A0A075B6L2 103 aa10.92□□□□□ -0.66
SMARCA4-219ENST00000592604 TMEM89A2RUT3 159 aa10.92□□□□□ -0.66
SMARCA4-219ENST00000592604 IGHV3-30-3P0DP02 117 aa10.92□□□□□ -0.66
SMARCA4-219ENST00000592604 MRPS36P82909 103 aaKnown RBP10.92□□□□□ -0.66
SMARCA4-219ENST00000592604 MSMBP08118 114 aa10.91□□□□□ -0.66
SMARCA4-219ENST00000592604 LITAFQ99732 161 aa10.91□□□□□ -0.66
SMARCA4-219ENST00000592604 TRBV30A0A0K0K1B3 111 aa10.91□□□□□ -0.66
SMARCA4-219ENST00000592604 ATXN8Q156A1 80 aa10.91□□□□□ -0.66
SMARCA4-219ENST00000592604 DNAJC30Q96LL9 226 aa10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 PRRC2AP48634 2157 aaKnown RBP10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 DOPEY2Q9Y3R5 2298 aa10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 H7C2G1 150 aa10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 AVPP01185 164 aa10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 LY6DQ14210 128 aa10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 LINC01620Q4KN68 170 aa10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 TIMM21Q9BVV7 248 aa10.9□□□□□ -0.66
SMARCA4-219ENST00000592604 IGHV4-30-2A0A087WSY4 118 aa10.89□□□□□ -0.67
SMARCA4-219ENST00000592604 ELANEP08246 267 aa10.89□□□□□ -0.67
SMARCA4-219ENST00000592604 LINC00694P0DN24 101 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms