RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CRYM-AS1A6NIL9 109 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 DEFB108AA8MXU0 73 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 E7EQL1 145 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 TMEM262E9PQX1 116 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 LHBP01229 141 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 PPYP01298 95 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 IGKV1-17P01599 117 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 AKR1C2P52895 323 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 UBE2BP63146 152 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 ZNF90Q03938 601 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 SYCNQ0VAF6 134 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 KLRD1Q13241 179 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 HMGN3Q15651 99 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 SP6Q3SY56 376 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 LINC01554Q52M75 96 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 MPV17L2Q567V2 206 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 Q56UQ5 140 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 ZNF818PQ6ZRF7 136 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 OR10P1Q8NGE3 313 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 OR4B1Q8NGF8 309 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 LINC01560Q8TB33 94 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 RNASE6Q93091 150 aaKnown RBP2.73□□□□□ -1.97
NUP88-213ENST00000576862 LINC00526Q96FQ7 95 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 AQP10Q96PS8 301 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 PRO1933Q9H354 126 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 C16orf95Q9H693 158 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 XAGE1AQ9HD64 81 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 ZNF355PQ9NSJ1 428 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 ZNF586Q9NXT0 402 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 FKBP11Q9NYL4 201 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 IL36BQ9NZH7 164 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 TP73-AS1Q9UF72 201 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 BOD1L1Q8NFC6 3051 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 DCHS1Q96JQ0 3298 aa2.73□□□□□ -1.97
NUP88-213ENST00000576862 IGSF10Q6WRI0 2623 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 ZNF462Q96JM2 2506 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 IGHV7-4-1A0A0J9YVY3 117 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 C3orf85A0A1B0GTC6 90 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 HMSDA8MTL9 139 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 A8MWL6 223 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 BUB1B-PAK6H3BSN5 160 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 M0R233 179 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 CFDP00746 253 aaPredicted RBP2.72□□□□□ -1.97
NUP88-213ENST00000576862 HRASP01112 189 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 TCRAP04437 139 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 SEC11BP0C7V7 166 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 IGLC1P0CG04 106 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 CRYGAP11844 174 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 SLC25A4P12235 298 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H4AP62805 103 aaKnown RBP2.72□□□□□ -1.97
NUP88-213ENST00000576862 CCL8P80075 99 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 AKR1C1Q04828 323 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 TFF3Q07654 80 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 LGALS9BQ3B8N2 356 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 Q6AWC8 147 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 MRPL54Q6P161 138 aaKnown RBP2.72□□□□□ -1.97
NUP88-213ENST00000576862 LYZL2Q7Z4W2 148 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 SVBPQ8N300 66 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 FAM216BQ8N7L0 139 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 DEFB108BQ8NET1 73 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 OR4X2Q8NGF9 303 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 PPP1R1CQ8WVI7 109 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 RAB37Q96AX2 223 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 GAFA1Q96PS6 74 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 B9D2Q9BPU9 175 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 NMES1Q9C002 83 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 AGPAT4-IT1Q9H0P7 198 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 BET1LQ9NYM9 111 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 LAMA5O15230 3695 aa2.72□□□□□ -1.97
NUP88-213ENST00000576862 ROS1P08922 2347 aa2.71□□□□□ -1.97
NUP88-213ENST00000576862 PRR14LQ5THK1 2151 aa2.71□□□□□ -1.97
NUP88-213ENST00000576862 TNRC6AQ8NDV7 1962 aaKnown RBP2.71□□□□□ -1.98
NUP88-213ENST00000576862 CADP27708 2225 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 TRBV20-1A0A075B6N2 111 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 IGHV3-43A0A0B4J1X8 118 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 TMEM256-PLSCR3K7ERE1 68 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 HIST1H2BKO60814 126 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 IGKV1-39P01597 117 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 GYPAP02724 150 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 IGKV1D-39P04432 117 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 HIST1H2BJP06899 126 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 CGB3P0DN86 165 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 CGB7P0DN87 165 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 CSN1S1P47710 185 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 DYNLT3P51808 116 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 RPL30P62888 115 aaKnown RBP2.71□□□□□ -1.98
NUP88-213ENST00000576862 ZNF345Q14585 488 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 NMSQ5H8A3 153 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 LGALS9CQ6DKI2 356 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 NTM-AS1Q6ZSK4 140 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 ZC2HC1AQ96GY0 325 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 CHCHD7Q9BUK0 85 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 DYNLRB1Q9NP97 96 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 SLC39A9Q9NUM3 307 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 C21orf62Q9NYP8 219 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 SPTAN1Q13813 2472 aaKnown RBP2.71□□□□□ -1.98
NUP88-213ENST00000576862 DOPEY1Q5JWR5 2465 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 MYO18BQ8IUG5 2567 aa2.71□□□□□ -1.98
NUP88-213ENST00000576862 USP9XQ93008 2570 aaPredicted RBP2.71□□□□□ -1.98
NUP88-213ENST00000576862 LRRK2Q5S007 2527 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 186.9 ms