RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 VPREB3Q9UKI3 123 aa9.83□□□□□ -0.84
CLN3-210ENST00000563874 H7C2G1 150 aa9.83□□□□□ -0.84
CLN3-210ENST00000563874 J3QQQ9 107 aa9.83□□□□□ -0.84
CLN3-210ENST00000563874 PAPPA-AS1Q5QFB9 102 aa9.83□□□□□ -0.84
CLN3-210ENST00000563874 C10orf99Q6UWK7 81 aa9.83□□□□□ -0.84
CLN3-210ENST00000563874 SCGB1C2P0DMR2 95 aa9.82□□□□□ -0.84
CLN3-210ENST00000563874 ZNF876PQ49A33 203 aa9.82□□□□□ -0.84
CLN3-210ENST00000563874 TMEM141Q96I45 108 aa9.82□□□□□ -0.84
CLN3-210ENST00000563874 UCNP55089 124 aa9.82□□□□□ -0.84
CLN3-210ENST00000563874 SLC25A29Q8N8R3 303 aa9.82□□□□□ -0.84
CLN3-210ENST00000563874 TIMM17AQ99595 171 aa9.82□□□□□ -0.84
CLN3-210ENST00000563874 CDIP1Q9H305 208 aa9.82□□□□□ -0.84
CLN3-210ENST00000563874 USP9YO00507 2555 aaPredicted RBP9.82□□□□□ -0.84
CLN3-210ENST00000563874 LGALS3P17931 250 aaKnown RBP9.81□□□□□ -0.84
CLN3-210ENST00000563874 Q8N1Y9 231 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 AMELXQ99217 191 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 TRBV27A0A0K0K1C4 114 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 A6NDX4 124 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 CARD19Q96LW7 228 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 ZNF580Q9UK33 172 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 SPINK13Q1W4C9 94 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 CUBNO60494 3623 aa9.81□□□□□ -0.84
CLN3-210ENST00000563874 IGHV3-16A0A0C4DH30 117 aa9.8□□□□□ -0.84
CLN3-210ENST00000563874 MT-ATP8P03928 68 aa9.8□□□□□ -0.84
CLN3-210ENST00000563874 C10orf126Q8N4M7 172 aa9.8□□□□□ -0.84
CLN3-210ENST00000563874 TRAV2A0A0B4J234 112 aa9.8□□□□□ -0.84
CLN3-210ENST00000563874 M0QY20 66 aa9.8□□□□□ -0.84
CLN3-210ENST00000563874 IGLV1-40P01703 118 aa9.8□□□□□ -0.84
CLN3-210ENST00000563874 HTN1P15515 57 aa9.8□□□□□ -0.84
CLN3-210ENST00000563874 H3BUA1 57 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 LGALS9O00182 355 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 PRO1854Q9UHT4 67 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 P0DMU3 169 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 FAM231AP0DMU4 169 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 FAM231CP0DMU5 169 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 FLNCQ14315 2725 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 ZANQ9Y493 2812 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 IGHV3-73A0A0B4J1V6 119 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 ADARB2-AS1A8MUL3 147 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 SPINK8P0C7L1 97 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 ATP6V0E2Q8NHE4 81 aa9.79□□□□□ -0.84
CLN3-210ENST00000563874 UTP20O75691 2785 aaKnown RBP9.78□□□□□ -0.84
CLN3-210ENST00000563874 A0A0J9YXV3 536 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 EIF4EBP3O60516 100 aaPredicted RBP9.78□□□□□ -0.84
CLN3-210ENST00000563874 XGP55808 180 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 TEN1Q86WV5 123 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 DUX5Q96PT3 197 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 ERG28Q9UKR5 140 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 AVPP01185 164 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 LYRM7Q5U5X0 104 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 TRPT1Q86TN4 253 aaKnown RBP9.78□□□□□ -0.84
CLN3-210ENST00000563874 C9orf85Q96MD7 179 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 ANAPC13Q9BS18 74 aa9.78□□□□□ -0.84
CLN3-210ENST00000563874 CSDC2Q9Y534 153 aaKnown RBP9.78□□□□□ -0.84
CLN3-210ENST00000563874 IGHV4-30-2A0A087WSY4 118 aa9.77□□□□□ -0.84
CLN3-210ENST00000563874 GNLYP22749 145 aa9.77□□□□□ -0.84
CLN3-210ENST00000563874 TRBV6-5A0A0K0K1A5 114 aa9.77□□□□□ -0.85
CLN3-210ENST00000563874 A8MWV9 139 aa9.77□□□□□ -0.85
CLN3-210ENST00000563874 ANKRD29Q8N6D5 301 aa9.77□□□□□ -0.85
CLN3-210ENST00000563874 PPDPFLQ8WWR9 84 aa9.77□□□□□ -0.85
CLN3-210ENST00000563874 POLQO75417 2590 aa9.77□□□□□ -0.85
CLN3-210ENST00000563874 A0A0J9YX75 114 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 CENPEQ02224 2701 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 TMEM223A0PJW6 202 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 RNASE13Q5GAN3 156 aaKnown RBP9.76□□□□□ -0.85
CLN3-210ENST00000563874 Q6ZUT4 128 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 MUSTN1Q8IVN3 82 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 CFAP46Q8IYW2 2715 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 TRBV20-1A0A075B6N2 111 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 ZNF22P17026 224 aaPredicted RBP9.76□□□□□ -0.85
CLN3-210ENST00000563874 CEMP1Q6PRD7 247 aaPredicted RBP9.76□□□□□ -0.85
CLN3-210ENST00000563874 USP24Q9UPU5 2620 aa9.76□□□□□ -0.85
CLN3-210ENST00000563874 IGHV1OR15-1A0A075B7D0 117 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 C9JAW5 83 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 PRM2P04554 102 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 C20orf203Q8NBC4 194 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 C10orf105Q8TEF2 133 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 CCL19Q99731 98 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 K7EMT4 169 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 RHODO00212 210 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 PROK1P58294 105 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 SNRPD3P62318 126 aaKnown RBP9.75□□□□□ -0.85
CLN3-210ENST00000563874 CFHR3Q02985 330 aa9.75□□□□□ -0.85
CLN3-210ENST00000563874 BEX4Q9NWD9 120 aaPredicted RBP9.75□□□□□ -0.85
CLN3-210ENST00000563874 LEPROTO15243 131 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 WIPF1O43516 503 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 ELANEP08246 267 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 SYNJ2BPP57105 145 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 Q1RN00 199 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 NSUN5P1Q3KNT7 163 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 IGLV4-3A0A075B6K6 122 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 IGHV4-59P01825 116 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 IGHV3-33P01772 117 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 MSMBP08118 114 aa9.74□□□□□ -0.85
CLN3-210ENST00000563874 USP9XQ93008 2570 aaPredicted RBP9.73□□□□□ -0.85
CLN3-210ENST00000563874 I3L3M4 83 aa9.73□□□□□ -0.85
CLN3-210ENST00000563874 SLC25A20O43772 301 aa9.73□□□□□ -0.85
CLN3-210ENST00000563874 PSMB8P28062 276 aa9.73□□□□□ -0.85
CLN3-210ENST00000563874 RHOHQ15669 191 aa9.73□□□□□ -0.85
CLN3-210ENST00000563874 TRAV8-3A0A0A6YYJ7 113 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms