RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CST11Q9H112 138 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 GSKIPQ9P0R6 139 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 MRC1P22897 1456 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 CCDC141Q6ZP82 1450 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 ALS2Q96Q42 1657 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 AKAP12Q02952 1782 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 KDM3BQ7LBC6 1761 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 EML5Q05BV3 1969 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 TGP01266 2768 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 CSMD2Q7Z408 3487 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 PTPRQQ9UMZ3 2332 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 CDC42BPAQ5VT25 1732 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 CRYBG1Q9Y4K1 1723 aa1.15□□□□□ -2.23
SCFD1-221ENST00000556534 CUBNO60494 3623 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 TLN2Q9Y4G6 2542 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 ANKRD36BQ8N2N9 1353 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 ASXL3Q9C0F0 2248 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 BORCS7-ASMTA0A0B4J1R7 106 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 TMEM189A5PLL7 270 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 KLF7O75840 302 aaPredicted RBP1.14□□□□□ -2.23
SCFD1-221ENST00000556534 ANGP03950 147 aaKnown RBP1.14□□□□□ -2.23
SCFD1-221ENST00000556534 TCRAP04437 139 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 SLC25A5P05141 298 aaKnown RBP1.14□□□□□ -2.23
SCFD1-221ENST00000556534 SAA1P0DJI8 122 aaPredicted RBP1.14□□□□□ -2.23
SCFD1-221ENST00000556534 SLC25A4P12235 298 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 CCL4P13236 92 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 TEN1Q86WV5 123 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 OR10AG1Q8NH19 301 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 C4AP0C0L4 1744 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 TJP1Q07157 1748 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 TOGARAM1Q9Y4F4 1720 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 COL6A6A6NMZ7 2263 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 ABCC6O95255 1503 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 CEP162Q5TB80 1403 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 HIVEP3Q5T1R4 2406 aa1.14□□□□□ -2.23
SCFD1-221ENST00000556534 F8P00451 2351 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 HELZP42694 1942 aaKnown RBP1.13□□□□□ -2.23
SCFD1-221ENST00000556534 LRRC37A2A6NM11 1700 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 UBR4Q5T4S7 5183 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 H3BRM9 83 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 OR2H2O95918 312 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 HBDP02042 147 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 PAEPP09466 180 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 IL9P15248 144 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 CMPK1P30085 196 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 MORN2Q502X0 79 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 LINC00322Q6ZN03 302 aaPredicted RBP1.13□□□□□ -2.23
SCFD1-221ENST00000556534 OR5AK2Q8NH90 309 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 ZNF431Q8TF32 576 aaPredicted RBP1.13□□□□□ -2.23
SCFD1-221ENST00000556534 LINC00526Q96FQ7 95 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 ODF3Q96PU9 254 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 UBR3Q6ZT12 1888 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 C5P01031 1676 aa1.13□□□□□ -2.23
SCFD1-221ENST00000556534 C4BP0C0L5 1744 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 ANKRD26Q9UPS8 1709 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 TET1Q8NFU7 2136 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 PRRC2CQ9Y520 2896 aaKnown RBP1.12□□□□□ -2.23
SCFD1-221ENST00000556534 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.12□□□□□ -2.23
SCFD1-221ENST00000556534 C3orf85A0A1B0GTC6 90 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 LOC107986453A0A1B0GWG9 222 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 UQCRQO14949 82 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 CKS1BP61024 79 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 BLCAPP62952 87 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 TMEM244Q5VVB8 128 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 HAGHLQ6PII5 290 aaPredicted RBP1.12□□□□□ -2.23
SCFD1-221ENST00000556534 TCTE3Q8IZS6 198 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 MAFIPQ8WZ33 124 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 TMEM138Q9NPI0 162 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 SPANXCQ9NY87 97 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 MEGF8Q7Z7M0 2845 aa1.12□□□□□ -2.23
SCFD1-221ENST00000556534 APCP25054 2843 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 LTN1O94822 1766 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 DCHS2Q6V1P9 2916 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 NSD1Q96L73 2696 aaPredicted RBP1.11□□□□□ -2.23
SCFD1-221ENST00000556534 ZNF727A8MUV8 499 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 IGHV3-33P01772 117 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 DBIP07108 87 aaKnown RBP1.11□□□□□ -2.23
SCFD1-221ENST00000556534 GTF2A1P52655 376 aaPredicted RBP1.11□□□□□ -2.23
SCFD1-221ENST00000556534 HSD17B12Q53GQ0 312 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 CASC2Q6XLA1 102 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 LIMD2Q9BT23 127 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 TMEM14CQ9P0S9 112 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 C22orf24Q9Y442 160 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 DOPEY2Q9Y3R5 2298 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 MON2Q7Z3U7 1717 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 PCLOQ9Y6V0 5065 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 MYH13Q9UKX3 1938 aa1.11□□□□□ -2.23
SCFD1-221ENST00000556534 AKAP9Q99996 3911 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 ZGRF1Q86YA3 2104 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 WNK3Q9BYP7 1800 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 ANKARQ7Z5J8 1434 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 A0A096LPI6 279 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 PPYP01298 95 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 CD14P08571 375 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 GLIPR1L1Q6UWM5 242 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 HSPB8Q9UJY1 196 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 MPC1Q9Y5U8 109 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 NINQ8N4C6 2090 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 DLEC1Q9Y238 1755 aa1.1□□□□□ -2.23
SCFD1-221ENST00000556534 BSNQ9UPA5 3926 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms