RNA–Protein interactions for RNA: ENST00000553704.2

LINC-ROR-201, Transcript of long intergenic non-protein coding RNA, regulator of reprogramming, humanhuman

TSL 1 (best) BASIC

Gene LINC-ROR, Length 2,603 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC-ROR-201ENST00000553704 SRSF9Q13242 221 aaKnown RBP eCLIP5.11□□□□□ -1.59
LINC-ROR-201ENST00000553704 TMEM141Q96I45 108 aa5.11□□□□□ -1.59
LINC-ROR-201ENST00000553704 GTSF1LQ9H1H1 148 aa5.11□□□□□ -1.59
LINC-ROR-201ENST00000553704 EIF4EBP3O60516 100 aaPredicted RBP5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 IGHV3-30P01768 117 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 IGHV3-30-5P0DP03 117 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 NSUN5P1Q3KNT7 163 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 HIST2H2BDQ6DRA6 164 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 C18orf65Q6ZTR6 163 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 ODF3Q96PU9 254 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 ZNF469Q96JG9 3925 aaPredicted RBP5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 A0A096LNT2 108 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 IGHV3-73A0A0B4J1V6 119 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 TGFAP01135 160 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 PROK1P58294 105 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 HERVK_113P61574 105 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 SNRPD3P62318 126 aaKnown RBP5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 DEFB136Q30KP8 78 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 CACNA1AO00555 2505 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 LOC107984156A0A0G2JMH3 177 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 KNCNA6PVL3 124 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 J3QQQ9 107 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 AZU1P20160 251 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 HOXD3P31249 432 aaPredicted RBP5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 UBE2D3P61077 147 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 UBE2D2P62837 147 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 CFAP126Q5VTH2 177 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 NDUFA11Q86Y39 141 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 ARL17AQ8IVW1 177 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 Q9UF83 564 aa5.1□□□□□ -1.59
LINC-ROR-201ENST00000553704 CR1P17927 2039 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 RBMY1BA6NDE4 496 aaKnown RBP5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 RBMY1EA6NEQ0 496 aaKnown RBP5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 RBMY1DP0C7P1 496 aaKnown RBP5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 CFC1BP0CG36 223 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 CFC1P0CG37 223 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 PSMB2P49721 201 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 PAPPA-AS1Q5QFB9 102 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 SAMD13Q5VXD3 122 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 TRPT1Q86TN4 253 aaKnown RBP5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 SYT8Q8NBV8 401 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 FAM104AQ969W3 186 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 PTH2Q96A98 100 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 ZNF702PQ9H963 129 aa5.09□□□□□ -1.59
LINC-ROR-201ENST00000553704 CUBNO60494 3623 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 IGLV4-3A0A075B6K6 122 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 A0A0J9YXV3 536 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 TMEM223A0PJW6 202 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 GAGE12HA6NDE8 117 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 HTN1P15515 57 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 ZNF22P17026 224 aaPredicted RBP5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 SLURP1P55000 103 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 SMAGPQ0VAQ4 97 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 FHL3Q13643 280 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 RHOHQ15669 191 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 NFE4Q86UQ8 179 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 SLC25A29Q8N8R3 303 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 C20orf203Q8NBC4 194 aa5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 DLX4Q92988 240 aaPredicted RBP5.09□□□□□ -1.6
LINC-ROR-201ENST00000553704 TCL1BO95988 128 aa5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 RNASE13Q5GAN3 156 aaKnown RBP5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 CEMP1Q6PRD7 247 aaPredicted RBP5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 ZNF418Q8TF45 676 aaPredicted RBP5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 LGALS3P17931 250 aaKnown RBP5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 C4orf48Q5BLP8 95 aa5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 LINC01356Q8N9X3 169 aa5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 DUX3Q96PT4 197 aa5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 SPATA25Q9BR10 227 aa5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 VPREB3Q9UKI3 123 aa5.08□□□□□ -1.6
LINC-ROR-201ENST00000553704 ZFYVE26Q68DK2 2539 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 ADARB2-AS1A8MUL3 147 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 I3L3M4 83 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 RHODO00212 210 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 TCTEX1D4Q5JR98 221 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 Q6ZSN1 163 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 C10orf126Q8N4M7 172 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 C1QTNF4Q9BXJ3 329 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 BEX4Q9NWD9 120 aaPredicted RBP5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 CREBBPQ92793 2442 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 TMEM89A2RUT3 159 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 GATA3P23771 443 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 DEFB131AP59861 70 aa5.07□□□□□ -1.6
LINC-ROR-201ENST00000553704 TEX15Q9BXT5 2789 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 TRGV11A0A075B6L2 103 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 TRAV2A0A0B4J234 112 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 LEPROTO15243 131 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 FOXI1Q12951 378 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 SIGMAR1Q99720 223 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 LRRK2Q5S007 2527 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 NBPF19A0A087WUL8 3843 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 ABCA12Q86UK0 2595 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 FAM208BQ5VWN6 2430 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 TRAV8-3A0A0A6YYJ7 113 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 FSHBP01225 129 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 CD28P10747 220 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 CARD19Q96LW7 228 aa5.06□□□□□ -1.6
LINC-ROR-201ENST00000553704 ACACBO00763 2458 aa5.05□□□□□ -1.6
LINC-ROR-201ENST00000553704 ELANEP08246 267 aa5.05□□□□□ -1.6
LINC-ROR-201ENST00000553704 Q5PR19 223 aa5.05□□□□□ -1.6
LINC-ROR-201ENST00000553704 TMEM61Q8N0U2 210 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms