RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 TRAV23DV6A0A075B6W5 121 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 A0A0G2JND7 137 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 H7BZZ5 65 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 HMGN3Q15651 99 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 SPINK14Q6IE38 97 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 FAM167A-AS1Q96KT0 104 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 ORMDL1Q9P0S3 153 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 PRO0461Q9UI25 63 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 LAMB4A4D0S4 1761 aa3.55□□□□□ -1.84
VPS29-210ENST00000552130 ZFHX2Q9C0A1 2572 aaPredicted RBP3.54□□□□□ -1.84
VPS29-210ENST00000552130 TRBV7-3A0A075B6L6 115 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 TEX49A0A1B0GTD5 131 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 H3BUT2 72 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 UBE2D3P61077 147 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 UBE2D2P62837 147 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 HEPN1Q6WQI6 88 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 DMAC1Q96GE9 116 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 MRPL36Q9P0J6 103 aaKnown RBP3.54□□□□□ -1.84
VPS29-210ENST00000552130 PRO1854Q9UHT4 67 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 NOTCH2Q04721 2471 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 TANC1Q9C0D5 1861 aa3.54□□□□□ -1.84
VPS29-210ENST00000552130 KDM6BO15054 1643 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 A0A0G2JQZ4 141 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 RTL8CO15255 209 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 SPATA45Q537H7 98 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 KRTAP11-1Q8IUC1 163 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 Q8N6K4 173 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 ODF3Q96PU9 254 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 UGGT2Q9NYU1 1516 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 ZGRF1Q86YA3 2104 aa3.53□□□□□ -1.84
VPS29-210ENST00000552130 PEAK1Q9H792 1746 aa3.53□□□□□ -1.85
VPS29-210ENST00000552130 TET3O43151 1660 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 MYH4Q9Y623 1939 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 MED12LQ86YW9 2145 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 TRAV22A0A0B4J277 110 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 A0A1W2PNU3 283 aaPredicted RBP3.52□□□□□ -1.85
VPS29-210ENST00000552130 NUPR2A6NF83 97 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 UBE2D1P51668 147 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 SNRPFP62306 86 aaKnown RBP3.52□□□□□ -1.85
VPS29-210ENST00000552130 PMCHL1Q16048 86 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 PATE1Q8WXA2 126 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 TP53TG3Q9ULZ0 132 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 MAGI3Q5TCQ9 1506 aa3.52□□□□□ -1.85
VPS29-210ENST00000552130 TRBV6-8A0A0A6YYG3 113 aa3.51□□□□□ -1.85
VPS29-210ENST00000552130 BCE1O60756 84 aa3.51□□□□□ -1.85
VPS29-210ENST00000552130 SMIM11AP58511 58 aa3.51□□□□□ -1.85
VPS29-210ENST00000552130 TPRXLQ17RH7 258 aa3.51□□□□□ -1.85
VPS29-210ENST00000552130 VMO1Q7Z5L0 202 aa3.51□□□□□ -1.85
VPS29-210ENST00000552130 C18orf32Q8TCD1 76 aa3.51□□□□□ -1.85
VPS29-210ENST00000552130 UNC13BO14795 1591 aa3.51□□□□□ -1.85
VPS29-210ENST00000552130 NWD2Q9ULI1 1742 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 SLIT3O75094 1523 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 UNC13CQ8NB66 2214 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 A0A0J9YY99 117 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 CHKB-CPT1BH3BT56 60 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 EDDM3BP56851 147 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 Q5VV11 94 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 LIMD2Q9BT23 127 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 BPESC1Q9GZL8 116 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 PRR34Q9NV39 138 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 MAP3K4Q9Y6R4 1608 aa3.5□□□□□ -1.85
VPS29-210ENST00000552130 F2Z2F3 143 aa3.49□□□□□ -1.85
VPS29-210ENST00000552130 COX6CP09669 75 aa3.49□□□□□ -1.85
VPS29-210ENST00000552130 KLKP1Q107X0 134 aa3.49□□□□□ -1.85
VPS29-210ENST00000552130 LINC01600Q96MT4 127 aa3.49□□□□□ -1.85
VPS29-210ENST00000552130 ANAPC11Q9NYG5 84 aa3.49□□□□□ -1.85
VPS29-210ENST00000552130 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS29-210ENST00000552130 LTN1O94822 1766 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 EEA1Q15075 1411 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 SDHAF1A6NFY7 115 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 ACYP1P07311 99 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 EFNA4P52798 201 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 LCE3EQ5T5B0 92 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 SFTA2Q6UW10 78 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 FAM223AQ8IWN6 122 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 CLTCQ00610 1675 aaKnown RBP3.48□□□□□ -1.85
VPS29-210ENST00000552130 SPAG17Q6Q759 2223 aa3.48□□□□□ -1.85
VPS29-210ENST00000552130 PLXNA1Q9UIW2 1896 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 ESPL1Q14674 2120 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 BLMP54132 1417 aaPredicted RBP3.47□□□□□ -1.85
VPS29-210ENST00000552130 ADAMTS7Q9UKP4 1686 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 BAZ2BQ9UIF8 2168 aaKnown RBP3.47□□□□□ -1.85
VPS29-210ENST00000552130 IGKV3-7A0A075B6H7 116 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 KRTAP10-8P60410 259 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 LINC00643Q86TS7 51 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 SPACA4Q8TDM5 124 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 EXPH5Q8NEV8 1989 aa3.47□□□□□ -1.85
VPS29-210ENST00000552130 ABCA8O94911 1581 aa3.46□□□□□ -1.85
VPS29-210ENST00000552130 CFAP74Q9C0B2 1584 aa3.46□□□□□ -1.85
VPS29-210ENST00000552130 HFM1A2PYH4 1435 aa3.46□□□□□ -1.86
VPS29-210ENST00000552130 CDK13Q14004 1512 aaKnown RBP3.46□□□□□ -1.86
VPS29-210ENST00000552130 PTPN23Q9H3S7 1636 aa3.46□□□□□ -1.86
VPS29-210ENST00000552130 IGHV3-30P01768 117 aa3.46□□□□□ -1.86
VPS29-210ENST00000552130 IGHV3-30-5P0DP03 117 aa3.46□□□□□ -1.86
VPS29-210ENST00000552130 COL4A5P29400 1685 aa3.46□□□□□ -1.86
VPS29-210ENST00000552130 LTBP2Q14767 1821 aa3.45□□□□□ -1.86
VPS29-210ENST00000552130 LRCOL1A6NCL2 159 aa3.45□□□□□ -1.86
VPS29-210ENST00000552130 A8MU10 97 aa3.45□□□□□ -1.86
VPS29-210ENST00000552130 KRTAP13-3Q3SY46 172 aa3.45□□□□□ -1.86
VPS29-210ENST00000552130 CFAP126Q5VTH2 177 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms