RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CHKB-CPT1BH3BT56 60 aa6.65□□□□□ -1.34
VPS13D-212ENST00000543766 MSMPQ1L6U9 139 aa6.65□□□□□ -1.34
VPS13D-212ENST00000543766 LYPD5Q6UWN5 251 aa6.65□□□□□ -1.34
VPS13D-212ENST00000543766 REG3GQ6UW15 175 aa6.65□□□□□ -1.35
VPS13D-212ENST00000543766 TRBV7-3A0A075B6L6 115 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 INAFM1C9JVW0 142 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 ESRGQ1W209 222 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 LINC00588Q9Y4M8 146 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 SPENQ96T58 3664 aaKnown RBP6.64□□□□□ -1.35
VPS13D-212ENST00000543766 IGLV3-32A0A0A0MS00 114 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 FAM229BQ4G0N7 80 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 RNASE13Q5GAN3 156 aaKnown RBP6.64□□□□□ -1.35
VPS13D-212ENST00000543766 GPHB5Q86YW7 130 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 A0A096LNJ9 63 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 DEFB110Q30KQ9 67 aa6.64□□□□□ -1.35
VPS13D-212ENST00000543766 URB1O60287 2271 aaKnown RBP6.64□□□□□ -1.35
VPS13D-212ENST00000543766 MALRD1Q5VYJ5 2156 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 H7BZZ5 65 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 NDPQ00604 133 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 LINC01554Q52M75 96 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 PIK3CD-AS1Q5SR53 167 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 LINC00269Q8N2A0 174 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 Q6P435 159 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 C7orf65Q6ZTY9 151 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 Q8N2B8 174 aa6.63□□□□□ -1.35
VPS13D-212ENST00000543766 FAM27BQ5VT28 67 aa6.62□□□□□ -1.35
VPS13D-212ENST00000543766 MRPL35Q9NZE8 188 aaKnown RBP6.62□□□□□ -1.35
VPS13D-212ENST00000543766 SMG1Q96Q15 3661 aaKnown RBP6.62□□□□□ -1.35
VPS13D-212ENST00000543766 WFDC9Q8NEX5 89 aa6.62□□□□□ -1.35
VPS13D-212ENST00000543766 PCNX2A6NKB5 2137 aa6.62□□□□□ -1.35
VPS13D-212ENST00000543766 ACACAQ13085 2346 aa6.62□□□□□ -1.35
VPS13D-212ENST00000543766 TRAV21A0A0B4J279 112 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 H7C423 109 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 SPINK9Q5DT21 86 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 TMEM167BQ9NRX6 74 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 FAM30AQ9NZY2 134 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 ARFGEF3Q5TH69 2177 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 PLGLAQ15195 96 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 E7EUB6 86 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 MIR17HGQ75NE6 70 aa6.61□□□□□ -1.35
VPS13D-212ENST00000543766 OPRPNQ99935 248 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-212ENST00000543766 DSPP15924 2871 aaKnown RBP6.61□□□□□ -1.35
VPS13D-212ENST00000543766 Q6ZSV7 163 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 NDUFA12Q9UI09 145 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 ANKRD11Q6UB99 2663 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-212ENST00000543766 TMEM223A0PJW6 202 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 TMEM61Q8N0U2 210 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 ARRDC1-AS1Q9H2J1 176 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 X6R8D5 127 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 C2orf83Q53S99 150 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 LYPD1Q8N2G4 141 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 KLK15Q9H2R5 256 aa6.6□□□□□ -1.35
VPS13D-212ENST00000543766 A8MU10 97 aa6.59□□□□□ -1.35
VPS13D-212ENST00000543766 ATP1A1-AS1Q5TC04 95 aa6.59□□□□□ -1.35
VPS13D-212ENST00000543766 ZNF497Q6ZNH5 498 aa6.59□□□□□ -1.35
VPS13D-212ENST00000543766 GFRA4Q9GZZ7 299 aa6.59□□□□□ -1.35
VPS13D-212ENST00000543766 BOD1L1Q8NFC6 3051 aa6.59□□□□□ -1.35
VPS13D-212ENST00000543766 TRAV3A0A0B4J244 114 aa6.59□□□□□ -1.36
VPS13D-212ENST00000543766 C17orf98A8MV24 154 aa6.59□□□□□ -1.36
VPS13D-212ENST00000543766 PRM2P04554 102 aa6.59□□□□□ -1.36
VPS13D-212ENST00000543766 PHLDA3Q9Y5J5 127 aa6.59□□□□□ -1.36
VPS13D-212ENST00000543766 DMXL2Q8TDJ6 3036 aa6.59□□□□□ -1.36
VPS13D-212ENST00000543766 ZZEF1O43149 2961 aa6.59□□□□□ -1.36
VPS13D-212ENST00000543766 TRAV12-1A0A0B4J245 112 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 D6R8Y8 96 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 UBE2D1P51668 147 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 KLHL30-AS1Q8NEE0 82 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13D-212ENST00000543766 NRACQ8N912 160 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 C11orf72Q8NBR9 251 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 FAM167A-AS1Q96KT0 104 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 H0Y9J4 135 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 RIGQ13278 110 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 SPTA1P02549 2419 aa6.58□□□□□ -1.36
VPS13D-212ENST00000543766 LOC100131303A0A0U1RQF7 123 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 A6NED7 52 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 MUSTN1Q8IVN3 82 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 DYNLRB2Q8TF09 96 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 ZNF625Q96I27 306 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-212ENST00000543766 PRAC1Q96KF2 57 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 SPRR3Q9UBC9 169 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 NBASA2RRP1 2371 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 ATMQ13315 3056 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 TRAV13-2A0A0B4J235 113 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 TRGV8A0A0C4DH27 118 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 HCG22E2RYF7 251 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 LINC00337Q8N6G1 96 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 IGKV1D-17A0A075B6S4 117 aa6.57□□□□□ -1.36
VPS13D-212ENST00000543766 ANKRD17O75179 2603 aaKnown RBP6.56□□□□□ -1.36
VPS13D-212ENST00000543766 TRBV12-3P01733 135 aa6.56□□□□□ -1.36
VPS13D-212ENST00000543766 ATP5EP56381 51 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-212ENST00000543766 LINC00322Q6ZN03 302 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-212ENST00000543766 Q8N6K4 173 aa6.56□□□□□ -1.36
VPS13D-212ENST00000543766 RETNLBQ9BQ08 111 aa6.56□□□□□ -1.36
VPS13D-212ENST00000543766 IGLV3-12A0A075B6K2 115 aa6.56□□□□□ -1.36
VPS13D-212ENST00000543766 FSTL3O95633 263 aa6.56□□□□□ -1.36
VPS13D-212ENST00000543766 CD59P13987 128 aa6.56□□□□□ -1.36
VPS13D-212ENST00000543766 FASNP49327 2511 aaKnown RBP6.56□□□□□ -1.36
VPS13D-212ENST00000543766 U3KQK5 164 aa6.56□□□□□ -1.36
VPS13D-212ENST00000543766 APC2O95996 2303 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms