RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SMIM17P0DL12 118 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 MED14OSP0DP75 135 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 RNASE3P12724 160 aaKnown RBP8.95□□□□□ -0.98
HDAC6-230ENST00000488543 ASIPP42127 132 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 HSD52Q0P140 79 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 SPINK13Q1W4C9 94 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 ZC2HC1BQ5TFG8 222 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 VPS25Q9BRG1 176 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 MRPL35Q9NZE8 188 aaKnown RBP8.95□□□□□ -0.98
HDAC6-230ENST00000488543 C9orf118A6NHY6 69 aa8.94□□□□□ -0.98
HDAC6-230ENST00000488543 SHISA2Q6UWI4 295 aa8.94□□□□□ -0.98
HDAC6-230ENST00000488543 AP1S3Q96PC3 154 aa8.94□□□□□ -0.98
HDAC6-230ENST00000488543 IGKCP01834 107 aa8.94□□□□□ -0.98
HDAC6-230ENST00000488543 MAPKAPK5-AS1Q8N8E1 139 aa8.94□□□□□ -0.98
HDAC6-230ENST00000488543 Q8N8P6 123 aa8.94□□□□□ -0.98
HDAC6-230ENST00000488543 RPL39LQ96EH5 51 aaKnown RBP8.94□□□□□ -0.98
HDAC6-230ENST00000488543 ZNF479Q96JC4 524 aa8.94□□□□□ -0.98
HDAC6-230ENST00000488543 NXT2Q9NPJ8 142 aaKnown RBP8.94□□□□□ -0.98
HDAC6-230ENST00000488543 PPBPP02775 128 aa8.93□□□□□ -0.98
HDAC6-230ENST00000488543 ODF3L2Q3SX64 289 aa8.93□□□□□ -0.98
HDAC6-230ENST00000488543 A6NDN8 102 aa8.93□□□□□ -0.98
HDAC6-230ENST00000488543 NEGR1Q7Z3B1 354 aa8.93□□□□□ -0.98
HDAC6-230ENST00000488543 H3BRM9 83 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 IGLV1-51P01701 117 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 RBMY1A1P0DJD3 496 aaKnown RBP8.92□□□□□ -0.98
HDAC6-230ENST00000488543 RBMY1CP0DJD4 496 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 S100A4P26447 101 aaKnown RBP8.92□□□□□ -0.98
HDAC6-230ENST00000488543 RBMY1FQ15415 496 aaKnown RBP8.92□□□□□ -0.98
HDAC6-230ENST00000488543 UFSP1Q6NVU6 142 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 FAM159AQ6UWV7 190 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 C3orf56Q8N813 242 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 CHAC1Q9BUX1 264 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 F8WDY8 70 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 NXPH4O95158 308 aa8.92□□□□□ -0.98
HDAC6-230ENST00000488543 C14orf178Q8N769 122 aaPredicted RBP8.92□□□□□ -0.98
HDAC6-230ENST00000488543 TRBV25-1A0A075B6N4 114 aa8.91□□□□□ -0.98
HDAC6-230ENST00000488543 LINC01546A6NGU7 62 aa8.91□□□□□ -0.98
HDAC6-230ENST00000488543 MGPP08493 103 aa8.91□□□□□ -0.98
HDAC6-230ENST00000488543 RIPPLY3P57055 190 aa8.91□□□□□ -0.98
HDAC6-230ENST00000488543 LAGE3Q14657 143 aa8.91□□□□□ -0.98
HDAC6-230ENST00000488543 DPM2O94777 84 aa8.91□□□□□ -0.98
HDAC6-230ENST00000488543 IGHV3-16A0A0C4DH30 117 aa8.9□□□□□ -0.98
HDAC6-230ENST00000488543 CD7P09564 240 aa8.9□□□□□ -0.98
HDAC6-230ENST00000488543 NHP2Q9NX24 153 aaKnown RBP8.9□□□□□ -0.98
HDAC6-230ENST00000488543 PHLDA3Q9Y5J5 127 aa8.9□□□□□ -0.98
HDAC6-230ENST00000488543 IGHV1OR15-1A0A075B7D0 117 aa8.9□□□□□ -0.99
HDAC6-230ENST00000488543 K7EP34 96 aa8.9□□□□□ -0.99
HDAC6-230ENST00000488543 SMIM15Q7Z3B0 74 aa8.9□□□□□ -0.99
HDAC6-230ENST00000488543 C9orf85Q96MD7 179 aa8.9□□□□□ -0.99
HDAC6-230ENST00000488543 SPCS1Q9Y6A9 102 aa8.9□□□□□ -0.99
HDAC6-230ENST00000488543 A0A1W2PPM0 123 aa8.89□□□□□ -0.99
HDAC6-230ENST00000488543 Q8N1Y9 231 aa8.89□□□□□ -0.99
HDAC6-230ENST00000488543 RASL10AQ92737 203 aa8.89□□□□□ -0.99
HDAC6-230ENST00000488543 WFDC10AQ9H1F0 79 aa8.89□□□□□ -0.99
HDAC6-230ENST00000488543 JPT2Q9H910 190 aa8.89□□□□□ -0.99
HDAC6-230ENST00000488543 PGPEP1Q9NXJ5 209 aa8.89□□□□□ -0.99
HDAC6-230ENST00000488543 MDFICQ9P1T7 246 aa8.89□□□□□ -0.99
HDAC6-230ENST00000488543 SIVA1O15304 175 aa8.88□□□□□ -0.99
HDAC6-230ENST00000488543 MTURNQ8N3F0 131 aa8.88□□□□□ -0.99
HDAC6-230ENST00000488543 SMIM2Q9BVW6 85 aa8.88□□□□□ -0.99
HDAC6-230ENST00000488543 SMIM13P0DJ93 91 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 EMP1P54849 157 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 BEAN1Q3B7T3 259 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 SAMD5Q5TGI4 173 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 GTF2H5Q6ZYL4 71 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 KIF25-AS1Q9Y6Z4 181 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 OR11H12B2RN74 326 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 ATP5LO75964 103 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 TIRAPP58753 221 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 TRPT1Q86TN4 253 aaKnown RBP8.87□□□□□ -0.99
HDAC6-230ENST00000488543 DPH3P1Q9H4G8 78 aa8.87□□□□□ -0.99
HDAC6-230ENST00000488543 A0A087WX48 190 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 MDFIQ99750 246 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 C19orf73Q9NVV2 129 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 CMYA5Q8N3K9 4069 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 LINC00315P59091 139 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 POM121L12Q8N7R1 296 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 WFDC9Q8NEX5 89 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 SCGB3A1Q96QR1 104 aa8.86□□□□□ -0.99
HDAC6-230ENST00000488543 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.85□□□□□ -0.99
HDAC6-230ENST00000488543 SUMO2P61956 95 aaKnown RBP8.85□□□□□ -0.99
HDAC6-230ENST00000488543 CEND1Q8N111 149 aa8.85□□□□□ -0.99
HDAC6-230ENST00000488543 PHLDA1Q8WV24 401 aaPredicted RBP8.85□□□□□ -0.99
HDAC6-230ENST00000488543 MRAP2Q96G30 205 aa8.85□□□□□ -0.99
HDAC6-230ENST00000488543 TRGV11A0A075B6L2 103 aa8.85□□□□□ -0.99
HDAC6-230ENST00000488543 A0A087WWL8 130 aa8.84□□□□□ -0.99
HDAC6-230ENST00000488543 PRM2P04554 102 aa8.84□□□□□ -0.99
HDAC6-230ENST00000488543 FABP2P12104 132 aa8.84□□□□□ -0.99
HDAC6-230ENST00000488543 C9orf66Q5T8R8 295 aa8.84□□□□□ -0.99
HDAC6-230ENST00000488543 STHQ8IWL8 128 aa8.84□□□□□ -0.99
HDAC6-230ENST00000488543 FAM110AQ9BQ89 295 aa8.84□□□□□ -0.99
HDAC6-230ENST00000488543 K7ERU9 68 aa8.83□□□□□ -1
HDAC6-230ENST00000488543 CMC4P56277 68 aaPredicted RBP8.83□□□□□ -1
HDAC6-230ENST00000488543 LINC00467Q9BRT7 94 aa8.83□□□□□ -1
HDAC6-230ENST00000488543 INSP01308 110 aa8.83□□□□□ -1
HDAC6-230ENST00000488543 HIGD1BQ9P298 99 aa8.83□□□□□ -1
HDAC6-230ENST00000488543 ANK2Q01484 3957 aa8.83□□□□□ -1
HDAC6-230ENST00000488543 NBEAL2Q6ZNJ1 2754 aa8.83□□□□□ -1
HDAC6-230ENST00000488543 NACAE9PAV3 2078 aa8.83□□□□□ -1
HDAC6-230ENST00000488543 RPL24P83731 157 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms