RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 TRBV6-4A0A1B0GX49 114 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 APCSP02743 223 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 TRGC2P03986 189 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 S100A8P05109 93 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 ATP5G1P05496 136 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 TRGC1P0CF51 173 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 RPS10P46783 165 aaKnown RBP4.17□□□□□ -1.74
USP39-213ENST00000467885 CRYBA4P53673 196 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 DAD1P61803 113 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 KIAA1644Q3SXP7 199 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 SLC25A29Q8N8R3 303 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 VSIG2Q96IQ7 327 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 ALKBH7Q9BT30 221 aaPredicted RBP4.17□□□□□ -1.74
USP39-213ENST00000467885 TRAPPC1Q9Y5R8 145 aa4.17□□□□□ -1.74
USP39-213ENST00000467885 TRAV26-2A0A0B4J265 109 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 TEX48A0A1B0GUV7 120 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 F5H697 171 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 SMKR1H3BMG3 65 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 HLA-DQA1P01909 254 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 P0DMU3 169 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 FAM231AP0DMU4 169 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 FAM231CP0DMU5 169 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 POLR2KP53803 58 aaKnown RBP4.16□□□□□ -1.74
USP39-213ENST00000467885 FAM74A4Q5TZK3 123 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 SUMO4Q6EEV6 95 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 Q6ZTC4 211 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 SMIM15Q7Z3B0 74 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 NRACQ8N912 160 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 AP1S3Q96PC3 154 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 NIT2Q9NQR4 276 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 PRO0255Q9UI72 69 aa4.16□□□□□ -1.74
USP39-213ENST00000467885 TRGV4A0A0C4DH28 118 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 TRBV6-5A0A0K0K1A5 114 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 LOC100131303A0A0U1RQF7 123 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 F5H768 121 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 RHODO00212 210 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 PPBPP02775 128 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 MT-ND6P03923 174 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 SMIM17P0DL12 118 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 CKS2P33552 79 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 MRAP2Q96G30 205 aa4.15□□□□□ -1.75
USP39-213ENST00000467885 IGLV2-18A0A075B6J9 118 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 DEFB131BA0A096LNP1 70 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 TRBV10-1A0A0K0K1A3 114 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 D6R8Y8 96 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 H3BNG1 76 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 NPYP01303 97 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 MGPP08493 103 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 NEXN-AS1Q8NBZ9 246 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 ZNRF2Q8NHG8 242 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 PHLDA1Q8WV24 401 aaPredicted RBP4.14□□□□□ -1.75
USP39-213ENST00000467885 RPL39LQ96EH5 51 aaKnown RBP4.14□□□□□ -1.75
USP39-213ENST00000467885 DNAJC30Q96LL9 226 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 PRELID3AQ96N28 172 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 C20orf78Q9BR46 151 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 CDIP1Q9H305 208 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 AP5S1Q9NUS5 200 aa4.14□□□□□ -1.75
USP39-213ENST00000467885 PRKDCP78527 4128 aaKnown RBP4.13□□□□□ -1.75
USP39-213ENST00000467885 TRBV7-3A0A075B6L6 115 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 TRAV26-1A0A087WT03 109 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 A0A096LPF7 62 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 TRAV10A0A0B4J240 114 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 A0A0J9YY99 117 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 VCYO14598 125 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 NUPR1O60356 82 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 NCR2O95944 276 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 HTN3P15516 51 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 UBE2D3P61077 147 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 UBE2D2P62837 147 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 Q0VG73 95 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 CEMP1Q6PRD7 247 aaPredicted RBP4.13□□□□□ -1.75
USP39-213ENST00000467885 NTM-AS1Q6ZSK4 140 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 NIT1Q86X76 327 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 ORMDL3Q8N138 153 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 URB1-AS1Q96HZ7 61 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 TMEM70Q9BUB7 260 aa4.13□□□□□ -1.75
USP39-213ENST00000467885 TRBV27A0A0K0K1C4 114 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 LOC389332A0A1B0GUA5 103 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 GAGE12JA6NER3 117 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 LINC01546A6NGU7 62 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 H7C1H1 209 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 K7EQD1 137 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 HIST1H2BKO60814 126 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 PPP1R17O96001 155 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 HIST1H2BJP06899 126 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 LINC00694P0DN24 101 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 GYPEP15421 78 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 HIST1H2BOP23527 126 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 SRIP30626 198 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 HIST1H2BBP33778 126 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 IFI27P40305 119 aaPredicted RBP4.12□□□□□ -1.75
USP39-213ENST00000467885 HIST1H2BDP58876 126 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 SUMO2P61956 95 aaKnown RBP4.12□□□□□ -1.75
USP39-213ENST00000467885 HIST1H2BCP62807 126 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 RPL32P62910 135 aaKnown RBP4.12□□□□□ -1.75
USP39-213ENST00000467885 GAGE1Q13065 139 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 GAGE4Q13068 117 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 GAGE5Q13069 117 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 RHOHQ15669 191 aa4.12□□□□□ -1.75
USP39-213ENST00000467885 ZNF56Q15929 161 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms