RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 POM121L12Q8N7R1 296 aa12.08□□□□□ -0.48
NKX3-1-201ENST00000380871 DCANP1Q8TF63 244 aa12.08□□□□□ -0.48
NKX3-1-201ENST00000380871 NOTCH2Q04721 2471 aa12.07□□□□□ -0.48
NKX3-1-201ENST00000380871 NFE4Q86UQ8 179 aa12.07□□□□□ -0.48
NKX3-1-201ENST00000380871 IGHV3-64A0A075B6Q5 118 aa12.07□□□□□ -0.48
NKX3-1-201ENST00000380871 PMVKQ15126 192 aa12.07□□□□□ -0.48
NKX3-1-201ENST00000380871 IGHV4OR15-8A0A075B7B6 117 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 A0A087WW49 117 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 H3BUA1 57 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 GATA3P23771 443 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 PSMB8P28062 276 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 CFAP126Q5VTH2 177 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 IGHV4-31P0DP07 118 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 KIR2DL4Q99706 377 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 J3QR89 54 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 SPATA25Q9BR10 227 aa12.06□□□□□ -0.48
NKX3-1-201ENST00000380871 TMEM238LA0A1B0GVL6 79 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 A6NJY4 79 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 PPP1R17O96001 155 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 ID1P41134 155 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 ZNF56Q15929 161 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 NDUFA11Q86Y39 141 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 DLX4Q92988 240 aaPredicted RBP12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 VCYO14598 125 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 CFHR3Q02985 330 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 SPINK13Q1W4C9 94 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 VPREB3Q9UKI3 123 aa12.05□□□□□ -0.48
NKX3-1-201ENST00000380871 FHL3Q13643 280 aa12.04□□□□□ -0.48
NKX3-1-201ENST00000380871 A0A096LNT2 108 aa12.04□□□□□ -0.48
NKX3-1-201ENST00000380871 CFC1BP0CG36 223 aa12.04□□□□□ -0.48
NKX3-1-201ENST00000380871 CFC1P0CG37 223 aa12.04□□□□□ -0.48
NKX3-1-201ENST00000380871 ZNF580Q9UK33 172 aa12.04□□□□□ -0.48
NKX3-1-201ENST00000380871 SLURP1P55000 103 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 Q8N1Y9 231 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 AMELXQ99217 191 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 IGHV3-30P01768 117 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 IGHV3-30-5P0DP03 117 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 HERVK_113P61574 105 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 TCL1BO95988 128 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 FOXI1Q12951 378 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 DEFB113Q30KQ7 82 aa12.03□□□□□ -0.48
NKX3-1-201ENST00000380871 IGHV3-16A0A0C4DH30 117 aa12.02□□□□□ -0.48
NKX3-1-201ENST00000380871 HOXD3P31249 432 aaPredicted RBP12.02□□□□□ -0.48
NKX3-1-201ENST00000380871 UBE2D3P61077 147 aa12.02□□□□□ -0.48
NKX3-1-201ENST00000380871 UBE2D2P62837 147 aa12.02□□□□□ -0.48
NKX3-1-201ENST00000380871 ZNF876PQ49A33 203 aa12.02□□□□□ -0.48
NKX3-1-201ENST00000380871 SYT8Q8NBV8 401 aa12.02□□□□□ -0.48
NKX3-1-201ENST00000380871 C1QTNF4Q9BXJ3 329 aa12.02□□□□□ -0.48
NKX3-1-201ENST00000380871 TRBV27A0A0K0K1C4 114 aa12.01□□□□□ -0.49
NKX3-1-201ENST00000380871 TRBV7-9A0A0J9YWB2 115 aa12.01□□□□□ -0.49
NKX3-1-201ENST00000380871 A0A1W2PRX2 142 aa12.01□□□□□ -0.49
NKX3-1-201ENST00000380871 M0QY20 66 aa12.01□□□□□ -0.49
NKX3-1-201ENST00000380871 PRM2P04554 102 aa12.01□□□□□ -0.49
NKX3-1-201ENST00000380871 TIMM17AQ99595 171 aa12.01□□□□□ -0.49
NKX3-1-201ENST00000380871 J3QQQ9 107 aa12.01□□□□□ -0.49
NKX3-1-201ENST00000380871 FLNAP21333 2647 aaKnown RBP12□□□□□ -0.49
NKX3-1-201ENST00000380871 LGALS9O00182 355 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 EIF4EBP3O60516 100 aaPredicted RBP12□□□□□ -0.49
NKX3-1-201ENST00000380871 P0DMU3 169 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 FAM231AP0DMU4 169 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 FAM231CP0DMU5 169 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 KNCNA6PVL3 124 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 RPL32P62910 135 aaKnown RBP12□□□□□ -0.49
NKX3-1-201ENST00000380871 SLC25A29Q8N8R3 303 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 TMEM141Q96I45 108 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 RAX2Q96IS3 184 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 ZNF702PQ9H963 129 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 APCP25054 2843 aa12□□□□□ -0.49
NKX3-1-201ENST00000380871 TCTEX1D4Q5JR98 221 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 C9orf85Q96MD7 179 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 NF1P21359 2839 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 ITPR3Q14573 2671 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 IGHV3-73A0A0B4J1V6 119 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 H7C2G1 150 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 SNRPD3P62318 126 aaKnown RBP11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 Q6YL49 198 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 WFDC11Q8NEX6 87 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 J3QLI3 93 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 CARD19Q96LW7 228 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 CDIP1Q9H305 208 aa11.99□□□□□ -0.49
NKX3-1-201ENST00000380871 PAPPA-AS1Q5QFB9 102 aa11.98□□□□□ -0.49
NKX3-1-201ENST00000380871 CHD6Q8TD26 2715 aa11.98□□□□□ -0.49
NKX3-1-201ENST00000380871 BRI3O95415 125 aa11.98□□□□□ -0.49
NKX3-1-201ENST00000380871 LGALS3P17931 250 aaKnown RBP11.98□□□□□ -0.49
NKX3-1-201ENST00000380871 UBR5O95071 2799 aaPredicted RBP11.98□□□□□ -0.49
NKX3-1-201ENST00000380871 A0A0J9YX75 114 aa11.98□□□□□ -0.49
NKX3-1-201ENST00000380871 ADARB2-AS1A8MUL3 147 aa11.98□□□□□ -0.49
NKX3-1-201ENST00000380871 K7EMT4 169 aa11.97□□□□□ -0.49
NKX3-1-201ENST00000380871 NACAE9PAV3 2078 aa11.97□□□□□ -0.49
NKX3-1-201ENST00000380871 A0A0J9YXV3 536 aa11.97□□□□□ -0.49
NKX3-1-201ENST00000380871 A4D1N5 150 aa11.97□□□□□ -0.49
NKX3-1-201ENST00000380871 PROK1P58294 105 aa11.97□□□□□ -0.49
NKX3-1-201ENST00000380871 RNASE13Q5GAN3 156 aaKnown RBP11.97□□□□□ -0.49
NKX3-1-201ENST00000380871 TRAV2A0A0B4J234 112 aa11.96□□□□□ -0.49
NKX3-1-201ENST00000380871 TRBV6-5A0A0K0K1A5 114 aa11.96□□□□□ -0.49
NKX3-1-201ENST00000380871 CEMP1Q6PRD7 247 aaPredicted RBP11.96□□□□□ -0.49
NKX3-1-201ENST00000380871 C10orf126Q8N4M7 172 aa11.96□□□□□ -0.49
NKX3-1-201ENST00000380871 Q9UF83 564 aa11.96□□□□□ -0.49
NKX3-1-201ENST00000380871 DEFB131AP59861 70 aa11.96□□□□□ -0.49
NKX3-1-201ENST00000380871 SCGB1C2P0DMR2 95 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms