RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CLEC19AQ6UXS0 136 aa11.08□□□□□ -0.64
PTPRA-201ENST00000216877 LINC00643Q86TS7 51 aa11.08□□□□□ -0.64
PTPRA-201ENST00000216877 PRRC2AP48634 2157 aaKnown RBP11.08□□□□□ -0.64
PTPRA-201ENST00000216877 BUB1B-PAK6H3BSN5 160 aa11.08□□□□□ -0.64
PTPRA-201ENST00000216877 A0A0J9YXY3 114 aa11.07□□□□□ -0.64
PTPRA-201ENST00000216877 NBR2O15453 112 aa11.07□□□□□ -0.64
PTPRA-201ENST00000216877 GATA4P43694 442 aa11.07□□□□□ -0.64
PTPRA-201ENST00000216877 MSRB2Q9Y3D2 182 aa11.07□□□□□ -0.64
PTPRA-201ENST00000216877 HIST1H4AP62805 103 aaKnown RBP11.07□□□□□ -0.64
PTPRA-201ENST00000216877 TIMM21Q9BVV7 248 aa11.07□□□□□ -0.64
PTPRA-201ENST00000216877 PEMTQ9UBM1 199 aa11.07□□□□□ -0.64
PTPRA-201ENST00000216877 LEPROTO15243 131 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 C17orf100A8MU93 164 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 VCYO14598 125 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 NDUFA12Q9UI09 145 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 TMEM223A0PJW6 202 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 EBI3Q14213 229 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 PRR9Q5T870 116 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 POM121L12Q8N7R1 296 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 SMCR5Q8TEV8 140 aa11.06□□□□□ -0.64
PTPRA-201ENST00000216877 IGLV3-9A0A075B6K5 115 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 CTSGP08311 255 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 LINC00311Q8N616 119 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 HOXD3P31249 432 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-201ENST00000216877 FANCD2OSQ96PS1 177 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 ZZEF1O43149 2961 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 A0A0G2JNJ9 132 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 F6UB75 175 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 NXPH4O95158 308 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 Q9UFV3 132 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 CSMD1Q96PZ7 3565 aa11.05□□□□□ -0.64
PTPRA-201ENST00000216877 LRRK2Q5S007 2527 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 MYO9AB2RTY4 2548 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 TMEM178BH3BS89 294 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 CRYGBP07316 175 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 HTN1P15515 57 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 DAZ2Q13117 558 aaKnown RBP11.04□□□□□ -0.64
PTPRA-201ENST00000216877 C15orf32Q32M92 178 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 DAZ4Q86SG3 579 aaKnown RBP11.04□□□□□ -0.64
PTPRA-201ENST00000216877 DAZ1Q9NQZ3 744 aaKnown RBP11.04□□□□□ -0.64
PTPRA-201ENST00000216877 DAZ3Q9NR90 486 aaKnown RBP11.04□□□□□ -0.64
PTPRA-201ENST00000216877 BAALC-AS2P0C853 105 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 C22orf34Q6ZV56 151 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 A0A087WVE0 104 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 IGKV3-20P01619 116 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 LINC00477Q96M19 166 aa11.04□□□□□ -0.64
PTPRA-201ENST00000216877 TRAV21A0A0B4J279 112 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 OVOL1O14753 267 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 PPP1R17O96001 155 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 TMEM141Q96I45 108 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 CYSTM1Q9H1C7 97 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 ATMQ13315 3056 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 FAM240AA0A1B0GVK7 77 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 LST1O00453 97 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 ADAMTSL4-AS1Q5T5F5 129 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 ZFHX3Q15911 3703 aa11.03□□□□□ -0.64
PTPRA-201ENST00000216877 IGIPA6NJ69 53 aa11.02□□□□□ -0.64
PTPRA-201ENST00000216877 ATOX1O00244 68 aa11.02□□□□□ -0.64
PTPRA-201ENST00000216877 IGHV3-30-3P0DP02 117 aa11.02□□□□□ -0.64
PTPRA-201ENST00000216877 DNAL4O96015 105 aa11.02□□□□□ -0.65
PTPRA-201ENST00000216877 CIRBPQ14011 172 aaKnown RBP11.02□□□□□ -0.65
PTPRA-201ENST00000216877 POLQO75417 2590 aa11.02□□□□□ -0.65
PTPRA-201ENST00000216877 CD28P10747 220 aa11.02□□□□□ -0.65
PTPRA-201ENST00000216877 SYNJ2BPP57105 145 aa11.02□□□□□ -0.65
PTPRA-201ENST00000216877 TMEM190Q8WZ59 177 aa11.02□□□□□ -0.65
PTPRA-201ENST00000216877 IMUPQ9GZP8 106 aa11.02□□□□□ -0.65
PTPRA-201ENST00000216877 RAI1Q7Z5J4 1906 aaPredicted RBP11.02□□□□□ -0.65
PTPRA-201ENST00000216877 ACYP1P07311 99 aa11.01□□□□□ -0.65
PTPRA-201ENST00000216877 ZNF876PQ49A33 203 aa11.01□□□□□ -0.65
PTPRA-201ENST00000216877 COX8CQ7Z4L0 72 aa11.01□□□□□ -0.65
PTPRA-201ENST00000216877 DPH3Q96FX2 82 aa11.01□□□□□ -0.65
PTPRA-201ENST00000216877 Q9HAA7 133 aa11.01□□□□□ -0.65
PTPRA-201ENST00000216877 LY6HO94772 140 aa11.01□□□□□ -0.65
PTPRA-201ENST00000216877 BSPH1Q075Z2 132 aa11.01□□□□□ -0.65
PTPRA-201ENST00000216877 MAP1AP78559 2803 aaPredicted RBP11.01□□□□□ -0.65
PTPRA-201ENST00000216877 USP9XQ93008 2570 aaPredicted RBP11.01□□□□□ -0.65
PTPRA-201ENST00000216877 SUMO4Q6EEV6 95 aa11□□□□□ -0.65
PTPRA-201ENST00000216877 AMELXQ99217 191 aa11□□□□□ -0.65
PTPRA-201ENST00000216877 VPS13CQ709C8 3753 aa11□□□□□ -0.65
PTPRA-201ENST00000216877 IGHV1-69DA0A0B4J2H0 117 aa11□□□□□ -0.65
PTPRA-201ENST00000216877 BUB3O43684 328 aa11□□□□□ -0.65
PTPRA-201ENST00000216877 ADGRG4Q8IZF6 3080 aa11□□□□□ -0.65
PTPRA-201ENST00000216877 CENPEQ02224 2701 aa11□□□□□ -0.65
PTPRA-201ENST00000216877 FASNP49327 2511 aaKnown RBP11□□□□□ -0.65
PTPRA-201ENST00000216877 IGLV11-55A0A075B6I3 123 aa10.99□□□□□ -0.65
PTPRA-201ENST00000216877 IGHV3-73A0A0B4J1V6 119 aa10.99□□□□□ -0.65
PTPRA-201ENST00000216877 MBD3L4A6NDZ8 208 aaPredicted RBP10.99□□□□□ -0.65
PTPRA-201ENST00000216877 MBD3L3A6NE82 208 aaPredicted RBP10.99□□□□□ -0.65
PTPRA-201ENST00000216877 MBD3L5A6NJ08 208 aaPredicted RBP10.99□□□□□ -0.65
PTPRA-201ENST00000216877 CITED2Q99967 270 aaPredicted RBP10.99□□□□□ -0.65
PTPRA-201ENST00000216877 NAV2Q8IVL1 2488 aa10.99□□□□□ -0.65
PTPRA-201ENST00000216877 ZNF672Q499Z4 452 aaPredicted RBP10.99□□□□□ -0.65
PTPRA-201ENST00000216877 DPM3Q9P2X0 92 aa10.98□□□□□ -0.65
PTPRA-201ENST00000216877 DKK4Q9UBT3 224 aa10.98□□□□□ -0.65
PTPRA-201ENST00000216877 F8W735 103 aaPredicted RBP10.97□□□□□ -0.65
PTPRA-201ENST00000216877 TIRAPP58753 221 aa10.97□□□□□ -0.65
PTPRA-201ENST00000216877 GPHB5Q86YW7 130 aa10.97□□□□□ -0.65
PTPRA-201ENST00000216877 PSMG3-AS1Q96PY0 264 aa10.97□□□□□ -0.65
PTPRA-201ENST00000216877 TIMM17AQ99595 171 aa10.97□□□□□ -0.65
PTPRA-201ENST00000216877 HIVEP3Q5T1R4 2406 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 367.5 ms