RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	FAT4	Q6V0I7	4981 aa		10.15	□□□□□ -0.78
CLK3-223	ENST00000568488	TRBV7-3	A0A075B6L6	115 aa		10.14	□□□□□ -0.79
CLK3-223	ENST00000568488	KRTAP26-1	Q6PEX3	210 aa		10.14	□□□□□ -0.79
CLK3-223	ENST00000568488	SPINK6	Q6UWN8	80 aa		10.14	□□□□□ -0.79
CLK3-223	ENST00000568488	PRNT	Q86SH4	94 aa		10.14	□□□□□ -0.79
CLK3-223	ENST00000568488	LYPD6B	Q8NI32	183 aa		10.14	□□□□□ -0.79
CLK3-223	ENST00000568488	SEC22C	Q9BRL7	303 aa		10.14	□□□□□ -0.79
CLK3-223	ENST00000568488		H3BVH4	76 aa		10.13	□□□□□ -0.79
CLK3-223	ENST00000568488	PTTG1	O95997	202 aa		10.13	□□□□□ -0.79
CLK3-223	ENST00000568488	IL15RA	Q13261	267 aa		10.13	□□□□□ -0.79
CLK3-223	ENST00000568488	CNPY1	Q3B7I2	92 aa		10.13	□□□□□ -0.79
CLK3-223	ENST00000568488	LINC00269	Q8N2A0	174 aa		10.13	□□□□□ -0.79
CLK3-223	ENST00000568488	IGLV10-54	A0A075B6I4	117 aa		10.12	□□□□□ -0.79
CLK3-223	ENST00000568488	TRBV10-1	A0A0K0K1A3	114 aa		10.12	□□□□□ -0.79
CLK3-223	ENST00000568488		K7EQM0	130 aa		10.12	□□□□□ -0.79
CLK3-223	ENST00000568488	SLPI	P03973	132 aa		10.12	□□□□□ -0.79
CLK3-223	ENST00000568488	MAJIN	Q3KP22	176 aa		10.12	□□□□□ -0.79
CLK3-223	ENST00000568488	IL36B	Q9NZH7	164 aa		10.12	□□□□□ -0.79
CLK3-223	ENST00000568488	TRAV6	A0A075B6T7	132 aa		10.11	□□□□□ -0.79
CLK3-223	ENST00000568488		A0A0U1RQV1	116 aa		10.11	□□□□□ -0.79
CLK3-223	ENST00000568488	SERTM2	A0A1B0GWG4	89 aa		10.11	□□□□□ -0.79
CLK3-223	ENST00000568488	HMGB3	O15347	200 aa	Known RBP	10.11	□□□□□ -0.79
CLK3-223	ENST00000568488	TCRB	P04435	133 aa		10.11	□□□□□ -0.79
CLK3-223	ENST00000568488	TCRA	P04437	139 aa		10.11	□□□□□ -0.79
CLK3-223	ENST00000568488	PKIA	P61925	76 aa		10.11	□□□□□ -0.79
CLK3-223	ENST00000568488	FLI1	Q01543	452 aa	Predicted RBP	10.11	□□□□□ -0.79
CLK3-223	ENST00000568488	OR11H4	Q8NGC9	324 aa		10.11	□□□□□ -0.79
CLK3-223	ENST00000568488		A0A1W2PPV4	95 aa		10.1	□□□□□ -0.79
CLK3-223	ENST00000568488	ARMS2	P0C7Q2	107 aa		10.1	□□□□□ -0.79
CLK3-223	ENST00000568488	COX6A2	Q02221	97 aa		10.1	□□□□□ -0.79
CLK3-223	ENST00000568488	PQLC2	Q6ZP29	291 aa		10.1	□□□□□ -0.79
CLK3-223	ENST00000568488	SFRP2	Q96HF1	295 aa		10.1	□□□□□ -0.79
CLK3-223	ENST00000568488	PRR34	Q9NV39	138 aa		10.1	□□□□□ -0.79
CLK3-223	ENST00000568488	IGKV2-24	A0A0C4DH68	120 aa		10.09	□□□□□ -0.79
CLK3-223	ENST00000568488	MUC21	A0A0G2JKD1	596 aa		10.09	□□□□□ -0.79
CLK3-223	ENST00000568488		B4DEV8	164 aa		10.09	□□□□□ -0.79
CLK3-223	ENST00000568488		M0R381	172 aa		10.09	□□□□□ -0.79
CLK3-223	ENST00000568488	RBX1	P62877	108 aa		10.09	□□□□□ -0.79
CLK3-223	ENST00000568488	GAGE6	Q13070	117 aa		10.09	□□□□□ -0.79
CLK3-223	ENST00000568488	C5orf17	Q8NAS9	161 aa		10.09	□□□□□ -0.79
CLK3-223	ENST00000568488	GRIFIN	A4D1Z8	144 aa		10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	FABP5P3	A8MUU1	101 aa		10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	RAB5C	P51148	216 aa		10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	SAPCD1	Q5SSQ6	148 aa		10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	STPG4	Q8N801	248 aa		10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	SCGB1C1	Q8TD33	95 aa		10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	PHLDA3	Q9Y5J5	127 aa		10.08	□□□□□ -0.8
CLK3-223	ENST00000568488	LRRC37A5P	Q49AS3	106 aa		10.07	□□□□□ -0.8
CLK3-223	ENST00000568488	OR10G8	Q8NGN5	311 aa		10.07	□□□□□ -0.8
CLK3-223	ENST00000568488		H7C1H1	209 aa		10.06	□□□□□ -0.8
CLK3-223	ENST00000568488		M0R036	132 aa		10.06	□□□□□ -0.8
CLK3-223	ENST00000568488	REG3A	Q06141	175 aa		10.06	□□□□□ -0.8
CLK3-223	ENST00000568488	SRSF9	Q13242	221 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
CLK3-223	ENST00000568488	PRSS3P2	Q8NHM4	247 aa		10.06	□□□□□ -0.8
CLK3-223	ENST00000568488	TPT1	P13693	172 aa	Known RBP	10.05	□□□□□ -0.8
CLK3-223	ENST00000568488	SUMO1	P63165	101 aa	Known RBP	10.05	□□□□□ -0.8
CLK3-223	ENST00000568488	NEXN-AS1	Q8NBZ9	246 aa		10.05	□□□□□ -0.8
CLK3-223	ENST00000568488	EPDR1	Q9UM22	224 aa		10.05	□□□□□ -0.8
CLK3-223	ENST00000568488	NDUFS6	O75380	124 aa	Known RBP	10.04	□□□□□ -0.8
CLK3-223	ENST00000568488	ARL14EPL	P0DKL9	152 aa		10.04	□□□□□ -0.8
CLK3-223	ENST00000568488	RAB2A	P61019	212 aa		10.04	□□□□□ -0.8
CLK3-223	ENST00000568488	NTM-AS1	Q6ZSK4	140 aa		10.04	□□□□□ -0.8
CLK3-223	ENST00000568488	SMIM3	Q9BZL3	60 aa		10.04	□□□□□ -0.8
CLK3-223	ENST00000568488	NUDT15	Q9NV35	164 aa		10.04	□□□□□ -0.8
CLK3-223	ENST00000568488	TRAV34	A0A0B4J273	112 aa		10.03	□□□□□ -0.8
CLK3-223	ENST00000568488	KRBOX1	C9JBD0	128 aa		10.03	□□□□□ -0.8
CLK3-223	ENST00000568488		H0YIZ8	118 aa		10.03	□□□□□ -0.8
CLK3-223	ENST00000568488	SIX6	O95475	246 aa		10.03	□□□□□ -0.8
CLK3-223	ENST00000568488	IFNA7	P01567	189 aa		10.03	□□□□□ -0.8
CLK3-223	ENST00000568488	ZNF56	Q15929	161 aa		10.03	□□□□□ -0.8
CLK3-223	ENST00000568488	SDHC	Q99643	169 aa	Predicted RBP	10.03	□□□□□ -0.8
CLK3-223	ENST00000568488	VAX2	Q9UIW0	290 aa		10.03	□□□□□ -0.8
CLK3-223	ENST00000568488	TMSB15B	A0A087X1C1	80 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	TRAV8-4	A0A0B4J246	113 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	FAM231B	A6NCW3	169 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	CCDC160	A6NGH7	325 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488		P01737	135 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	IL7	P13232	177 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	RPS10	P46783	165 aa	Known RBP	10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	RAB4B	P61018	213 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	TMEM97	Q5BJF2	176 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	DNLZ	Q5SXM8	178 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	ZFP82	Q8N141	532 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	DERL1	Q9BUN8	251 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	ARL2-SNX15	V9GYD0	113 aa		10.02	□□□□□ -0.81
CLK3-223	ENST00000568488	TRBV25-1	A0A075B6N4	114 aa		10.01	□□□□□ -0.81
CLK3-223	ENST00000568488	PLA2G10	O15496	165 aa		10.01	□□□□□ -0.81
CLK3-223	ENST00000568488	H2AFB2	P0C5Z0	115 aa		10.01	□□□□□ -0.81
CLK3-223	ENST00000568488		Q6ZRP5	223 aa		10.01	□□□□□ -0.81
CLK3-223	ENST00000568488	LYRM1	O43325	122 aa		10	□□□□□ -0.81
CLK3-223	ENST00000568488	GZMB	P10144	247 aa		10	□□□□□ -0.81
CLK3-223	ENST00000568488	CRIP1	P50238	77 aa		10	□□□□□ -0.81
CLK3-223	ENST00000568488	HIGD2B	Q4VC39	106 aa		9.99	□□□□□ -0.81
CLK3-223	ENST00000568488	RBM38	Q9H0Z9	239 aa	Known RBP	9.99	□□□□□ -0.81
CLK3-223	ENST00000568488	HSPB11	Q9Y547	144 aa		9.99	□□□□□ -0.81
CLK3-223	ENST00000568488		A0A096LNI7	61 aa		9.98	□□□□□ -0.81
CLK3-223	ENST00000568488	TRBV6-1	A0A0K0K1D8	114 aa		9.98	□□□□□ -0.81
CLK3-223	ENST00000568488		F5H697	171 aa		9.98	□□□□□ -0.81
CLK3-223	ENST00000568488	SH2D1A	O60880	128 aa		9.98	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms