RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CRYGDP07320 174 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 TCTEX1D4Q5JR98 221 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 TSHBP01222 138 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 CREBBPQ92793 2442 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 CSPG4Q6UVK1 2322 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 F5H697 171 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 C19orf54Q5BKX5 351 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 ZFP2Q6ZN57 461 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 SORL1Q92673 2214 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 NDUFA4O00483 81 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 Q6ZS46 218 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 RHPN1-AS1Q9BWJ2 59 aa9.93□□□□□ -0.82
CLN3-210ENST00000563874 CRYBG3Q68DQ2 2970 aa9.92□□□□□ -0.82
CLN3-210ENST00000563874 COX6B1P14854 86 aa9.92□□□□□ -0.82
CLN3-210ENST00000563874 PSMB2P49721 201 aa9.92□□□□□ -0.82
CLN3-210ENST00000563874 B5MCH6 92 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 BLCAPP62952 87 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 FAM74A4Q5TZK3 123 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 ZNF418Q8TF45 676 aaPredicted RBP9.91□□□□□ -0.82
CLN3-210ENST00000563874 CELSR2Q9HCU4 2923 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 IGLV4-69A0A075B6H9 119 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 LINC00315P59091 139 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 LINC01619G3V211 115 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 TMEM170BQ5T4T1 132 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 PTH2Q96A98 100 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 FAM19A4Q96LR4 140 aa9.91□□□□□ -0.82
CLN3-210ENST00000563874 TRAV12-3A0A0B4J271 114 aa9.9□□□□□ -0.82
CLN3-210ENST00000563874 IGKV3-20P01619 116 aa9.9□□□□□ -0.82
CLN3-210ENST00000563874 IGHV4-38-2P0DP08 117 aa9.9□□□□□ -0.82
CLN3-210ENST00000563874 SMCPP49901 116 aaPredicted RBP9.9□□□□□ -0.82
CLN3-210ENST00000563874 SUMO4Q6EEV6 95 aa9.9□□□□□ -0.82
CLN3-210ENST00000563874 KIF25-AS1Q9Y6Z4 181 aa9.9□□□□□ -0.82
CLN3-210ENST00000563874 CD7P09564 240 aa9.9□□□□□ -0.83
CLN3-210ENST00000563874 TSPEAR-AS2P59090 65 aa9.9□□□□□ -0.83
CLN3-210ENST00000563874 FAM159AQ6UWV7 190 aa9.9□□□□□ -0.83
CLN3-210ENST00000563874 IGHV1-69DA0A0B4J2H0 117 aa9.89□□□□□ -0.83
CLN3-210ENST00000563874 IGHV1-69P01742 117 aa9.89□□□□□ -0.83
CLN3-210ENST00000563874 SPATA25Q9BR10 227 aa9.89□□□□□ -0.83
CLN3-210ENST00000563874 ZNF256Q9Y2P7 627 aaPredicted RBP9.89□□□□□ -0.83
CLN3-210ENST00000563874 DOPEY2Q9Y3R5 2298 aa9.89□□□□□ -0.83
CLN3-210ENST00000563874 H3BUX3 64 aa9.89□□□□□ -0.83
CLN3-210ENST00000563874 C5orf47Q569G3 176 aa9.89□□□□□ -0.83
CLN3-210ENST00000563874 DLX4Q92988 240 aaPredicted RBP9.89□□□□□ -0.83
CLN3-210ENST00000563874 OPRPNQ99935 248 aaPredicted RBP9.89□□□□□ -0.83
CLN3-210ENST00000563874 IGIPA6NJ69 53 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 UBE2D1P51668 147 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 A0A0J9YY99 117 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 SDHAF1A6NFY7 115 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 C19orf84I3L1E1 186 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 CFAP126Q5VTH2 177 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 RNF183Q96D59 192 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 IGHV4-39P01824 125 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 LY6DQ14210 128 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 PMVKQ15126 192 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 NFE4Q86UQ8 179 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 ZNRF2Q8NHG8 242 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 KIR2DL4Q99706 377 aa9.88□□□□□ -0.83
CLN3-210ENST00000563874 TRAV12-2A0A075B6T6 113 aa9.87□□□□□ -0.83
CLN3-210ENST00000563874 PPP1R17O96001 155 aa9.87□□□□□ -0.83
CLN3-210ENST00000563874 MED14OSP0DP75 135 aa9.87□□□□□ -0.83
CLN3-210ENST00000563874 POLR2KP53803 58 aaKnown RBP9.87□□□□□ -0.83
CLN3-210ENST00000563874 FOXI1Q12951 378 aa9.87□□□□□ -0.83
CLN3-210ENST00000563874 SYT8Q8NBV8 401 aa9.87□□□□□ -0.83
CLN3-210ENST00000563874 KMT2BQ9UMN6 2715 aaPredicted RBP9.87□□□□□ -0.83
CLN3-210ENST00000563874 IGHV3-64A0A075B6Q5 118 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 IGHV4-61A0A0C4DH41 118 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 HERVK_113P61574 105 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 NDUFA11Q86Y39 141 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 APRG1Q8IVJ8 170 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 DAZ1Q9NQZ3 744 aaKnown RBP9.86□□□□□ -0.83
CLN3-210ENST00000563874 GAGE5Q13069 117 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 GAGE6Q13070 117 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 ACACBO00763 2458 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 IGHV4OR15-8A0A075B7B6 117 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 A0A087WW49 117 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 VCYO14598 125 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 CRIP2P52943 208 aaPredicted RBP9.86□□□□□ -0.83
CLN3-210ENST00000563874 USMG5Q96IX5 58 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 C1QTNF4Q9BXJ3 329 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 MDFICQ9P1T7 246 aa9.86□□□□□ -0.83
CLN3-210ENST00000563874 ITPR1Q14643 2758 aa9.85□□□□□ -0.83
CLN3-210ENST00000563874 EPG5Q9HCE0 2579 aa9.85□□□□□ -0.83
CLN3-210ENST00000563874 KLLNB2CW77 178 aa9.85□□□□□ -0.83
CLN3-210ENST00000563874 NXPH4O95158 308 aa9.85□□□□□ -0.83
CLN3-210ENST00000563874 ZNF688P0C7X2 276 aa9.85□□□□□ -0.83
CLN3-210ENST00000563874 IGHG2P01859 326 aa9.85□□□□□ -0.83
CLN3-210ENST00000563874 ZNF56Q15929 161 aa9.85□□□□□ -0.83
CLN3-210ENST00000563874 TCL1BO95988 128 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 CFC1BP0CG36 223 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 CFC1P0CG37 223 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 PPDPFQ9H3Y8 114 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 CSMD2Q7Z408 3487 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 FHL3Q13643 280 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 POM121L12Q8N7R1 296 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 IGHV3-30P01768 117 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 IGHV3-30-5P0DP03 117 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 UBE2D3P61077 147 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 UBE2D2P62837 147 aa9.84□□□□□ -0.83
CLN3-210ENST00000563874 DCANP1Q8TF63 244 aa9.83□□□□□ -0.84
CLN3-210ENST00000563874 RAX2Q96IS3 184 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms