RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 DNAH7Q8WXX0 4024 aa8.19□□□□□ -1.1
YBX3-213ENST00000542641 IGHV4-4A0A075B6R2 117 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 C7orf77A4D0Y5 90 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 SNAPINO95295 136 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 HOXA5P20719 270 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 RHEBQ15382 184 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 TWIST1Q15672 202 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 CNFNQ9BYD5 112 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 RPS10P5Q9NQ39 176 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 MSRB1Q9NZV6 116 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 MUC4Q99102 2169 aa8.18□□□□□ -1.1
YBX3-213ENST00000542641 A0A087WWL8 130 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 IGHV3-73A0A0B4J1V6 119 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 TRGV4A0A0C4DH28 118 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 A0A1B0GUT8 65 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 CIDEAO60543 219 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 SMIM17P0DL12 118 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 FHL2Q14192 279 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 FAM74A4Q5TZK3 123 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 ZFAND6Q6FIF0 208 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 CEMP1Q6PRD7 247 aaPredicted RBP8.17□□□□□ -1.1
YBX3-213ENST00000542641 AP1S3Q96PC3 154 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 SAMD10Q9BYL1 202 aa8.17□□□□□ -1.1
YBX3-213ENST00000542641 A0A087WWC5 75 aa8.16□□□□□ -1.1
YBX3-213ENST00000542641 NUPR2A6NF83 97 aa8.16□□□□□ -1.1
YBX3-213ENST00000542641 CRYGDP07320 174 aa8.16□□□□□ -1.1
YBX3-213ENST00000542641 TRGC1P0CF51 173 aa8.16□□□□□ -1.1
YBX3-213ENST00000542641 FAM3BP58499 235 aaPredicted RBP8.16□□□□□ -1.1
YBX3-213ENST00000542641 RIGQ13278 110 aa8.16□□□□□ -1.1
YBX3-213ENST00000542641 ZFP2Q6ZN57 461 aa8.16□□□□□ -1.1
YBX3-213ENST00000542641 C14orf178Q8N769 122 aaPredicted RBP8.16□□□□□ -1.1
YBX3-213ENST00000542641 HHLA3Q9XRX5 114 aa8.16□□□□□ -1.1
YBX3-213ENST00000542641 IGLL5B9A064 214 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 RHODO00212 210 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 EVI2AP22794 236 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 SLAQ13239 276 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 UFSP1Q6NVU6 142 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 SMIM15Q7Z3B0 74 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 IMMP2LQ96T52 175 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 TMEM242Q9NWH2 141 aa8.15□□□□□ -1.1
YBX3-213ENST00000542641 KLK5Q9Y337 293 aaPredicted RBP8.15□□□□□ -1.1
YBX3-213ENST00000542641 TRAV26-1A0A087WT03 109 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 A0A0J9YY99 117 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 C3orf84H3BNL1 204 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 GATA1P15976 413 aaPredicted RBP8.14□□□□□ -1.11
YBX3-213ENST00000542641 TMEM88Q6PEY1 159 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 KCNIP4Q6PIL6 250 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 FAM210BQ96KR6 192 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 PRO0255Q9UI72 69 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 KIF25-AS1Q9Y6Z4 181 aa8.14□□□□□ -1.11
YBX3-213ENST00000542641 F5H697 171 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 PAX4O43316 350 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 S100PP25815 95 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 CRYBA4P53673 196 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 ZNF56Q15929 161 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 MRPL54Q6P161 138 aaKnown RBP8.13□□□□□ -1.11
YBX3-213ENST00000542641 Q6ZSN1 163 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 BTF3L4Q96K17 158 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 DPH3P1Q9H4G8 78 aa8.13□□□□□ -1.11
YBX3-213ENST00000542641 A0A1B0GW15 77 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 MGPP08493 103 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 CAMPP49913 170 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 RAB4BP61018 213 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 CASC10Q5T4H9 136 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 ATRAIDQ6UW56 229 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 SLC25A29Q8N8R3 303 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 URGCP-MRPS24S4R325 110 aa8.12□□□□□ -1.11
YBX3-213ENST00000542641 TRBV6-4A0A1B0GX49 114 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 S100A8P05109 93 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 LINC00315P59091 139 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 HBBP68871 147 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 RHOHQ15669 191 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 ATP5L2Q7Z4Y8 100 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 VSIG2Q96IQ7 327 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 PRADC1Q9BSG0 188 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 TMEM191AQ9H0A3 160 aa8.11□□□□□ -1.11
YBX3-213ENST00000542641 DYNC2H1Q8NCM8 4307 aaKnown RBP8.11□□□□□ -1.11
YBX3-213ENST00000542641 TRAV9-1A0A075B6T8 112 aa8.1□□□□□ -1.11
YBX3-213ENST00000542641 A0A1B0GXF2 115 aa8.1□□□□□ -1.11
YBX3-213ENST00000542641 H3BNG1 76 aa8.1□□□□□ -1.11
YBX3-213ENST00000542641 NUDT3O95989 172 aa8.1□□□□□ -1.11
YBX3-213ENST00000542641 GYPEP15421 78 aa8.1□□□□□ -1.11
YBX3-213ENST00000542641 C15orf53Q8NAA6 179 aa8.1□□□□□ -1.11
YBX3-213ENST00000542641 CSMD3Q7Z407 3707 aa8.1□□□□□ -1.11
YBX3-213ENST00000542641 K7EQD1 137 aa8.09□□□□□ -1.11
YBX3-213ENST00000542641 TCTAP57738 103 aa8.09□□□□□ -1.11
YBX3-213ENST00000542641 APLNQ9ULZ1 77 aa8.09□□□□□ -1.11
YBX3-213ENST00000542641 NACAE9PAV3 2078 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 LOC100131303A0A0U1RQF7 123 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 H7C1H1 209 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 P0DMU3 169 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 FAM231AP0DMU4 169 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 FAM231CP0DMU5 169 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 RAB4AP20338 218 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 MRPL23Q16540 153 aaKnown RBP8.08□□□□□ -1.12
YBX3-213ENST00000542641 SUMO4Q6EEV6 95 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 RASL11AQ6T310 242 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 AMN1Q8IY45 258 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 ICOSQ9Y6W8 199 aa8.08□□□□□ -1.12
YBX3-213ENST00000542641 STARD9Q9P2P6 4700 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms