RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZNF138P52744 262 aa4□□□□□ -1.77
CD44-236ENST00000533222 SCGB3A1Q96QR1 104 aa4□□□□□ -1.77
CD44-236ENST00000533222 DEPPQ9NTK1 212 aa4□□□□□ -1.77
CD44-236ENST00000533222 ICOSQ9Y6W8 199 aa4□□□□□ -1.77
CD44-236ENST00000533222 GOLGA4Q13439 2230 aaKnown RBP4□□□□□ -1.77
CD44-236ENST00000533222 C2orf16Q68DN1 1984 aa4□□□□□ -1.77
CD44-236ENST00000533222 IGLV2-18A0A075B6J9 118 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 FAM223BA6NKX1 122 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 KLLNB2CW77 178 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 D6R8Y8 96 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 MIFP14174 115 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 SPINT3P49223 89 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 UBE2AP49459 152 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 RUSC1-AS1Q66K80 236 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 CLEC19AQ6UXS0 136 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 FAM223AQ8IWN6 122 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 C20orf197Q8N268 126 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 LYPD1Q8N2G4 141 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 NKAPP1Q8N9T2 125 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 FAM167A-AS1Q96KT0 104 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 TIMM17AQ99595 171 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 SPRR3Q9UBC9 169 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 ZNF580Q9UK33 172 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 HEATR5BQ9P2D3 2071 aa3.99□□□□□ -1.77
CD44-236ENST00000533222 TET1Q8NFU7 2136 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 TNRC6BQ9UPQ9 1833 aaKnown RBP3.98□□□□□ -1.77
CD44-236ENST00000533222 IGKV1D-13A0A0B4J2D9 117 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 IGHV5-51A0A0C4DH38 117 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 A0A1B0GW54 56 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 A8MUN3 132 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 KRTAP29-1A8MX34 341 aaPredicted RBP3.98□□□□□ -1.77
CD44-236ENST00000533222 FSTL3O95633 263 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 IGKV1-13P0DP09 117 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 PDE6HQ13956 83 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 SS18Q15532 418 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.98□□□□□ -1.77
CD44-236ENST00000533222 ZNF491Q8N8L2 437 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 LINC01560Q8TB33 94 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 ITLN1Q8WWA0 313 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 ZNF524Q96C55 264 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 TTTY13Q9BZ97 58 aa3.98□□□□□ -1.77
CD44-236ENST00000533222 POLEQ07864 2286 aa3.97□□□□□ -1.77
CD44-236ENST00000533222 TRAV8-3A0A0A6YYJ7 113 aa3.97□□□□□ -1.77
CD44-236ENST00000533222 H0Y9J4 135 aa3.97□□□□□ -1.77
CD44-236ENST00000533222 COX7A2LO14548 114 aa3.97□□□□□ -1.77
CD44-236ENST00000533222 IGHV3-13P01766 116 aa3.97□□□□□ -1.77
CD44-236ENST00000533222 SAA1P0DJI8 122 aaPredicted RBP3.97□□□□□ -1.77
CD44-236ENST00000533222 IMMP1LQ96LU5 166 aa3.97□□□□□ -1.77
CD44-236ENST00000533222 PHLDA3Q9Y5J5 127 aa3.97□□□□□ -1.77
CD44-236ENST00000533222 DYSFO75923 2080 aa3.96□□□□□ -1.77
CD44-236ENST00000533222 IGKV1D-17A0A075B6S4 117 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 IGIPA6NJ69 53 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 A6NN06 94 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 PRAC2D3DTV9 90 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 M0R381 172 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 DNAL4O96015 105 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 IGHV3-9P01782 118 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 ARMS2P0C7Q2 107 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 CD70P32970 193 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 MIR17HGQ75NE6 70 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 LINC00474Q9P2X8 69 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 MYOFQ9NZM1 2061 aa3.96□□□□□ -1.78
CD44-236ENST00000533222 GON4LQ3T8J9 2241 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 IGKV1-6A0A0C4DH72 117 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 F8WEM9 126 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 S100A4P26447 101 aaKnown RBP3.95□□□□□ -1.78
CD44-236ENST00000533222 ZNF137PP52743 207 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 Q1RN00 199 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 SPANXN1Q5VSR9 72 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 Q86TA4 180 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 TMEM141Q96I45 108 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 AMELXQ99217 191 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 TMEM14CQ9P0S9 112 aa3.95□□□□□ -1.78
CD44-236ENST00000533222 IGHV4OR15-8A0A075B7B6 117 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 A0A1B0GUV1 79 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 C17orf98A8MV24 154 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 F6UB75 175 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 PSPHP1O15172 72 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 LEPROTO15243 131 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 IGHV4-39P01824 125 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 RPS27P42677 84 aaKnown RBP3.94□□□□□ -1.78
CD44-236ENST00000533222 MP68P56378 58 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 KRTAP1-1Q07627 177 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 CIRBPQ14011 172 aaKnown RBP3.94□□□□□ -1.78
CD44-236ENST00000533222 NSUN5P1Q3KNT7 163 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 FBXL19-AS1Q494R0 122 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 C2orf83Q53S99 150 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 CCL4L1Q8NHW4 92 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 LIMD2Q9BT23 127 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 PROK2Q9HC23 129 aa3.94□□□□□ -1.78
CD44-236ENST00000533222 IGHV4-4A0A075B6R2 117 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 TRBV7-4A0A0J9YYF1 115 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 hDV103S1A0JD37 113 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 E7EUB6 86 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 JMJD7-PLA2G4BH0Y9G9 81 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 H3BSH0 61 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 FUSP35637 526 aaKnown RBP eCLIP3.93□□□□□ -1.78
CD44-236ENST00000533222 PRR3P79522 188 aaKnown RBP3.93□□□□□ -1.78
CD44-236ENST00000533222 CLLU1OSQ5K130 101 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 FAM53AQ6NSI3 398 aaPredicted RBP3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms