RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SMIM27A0A1W2PRY6 76 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 CIDEAO60543 219 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 NUDT3O95989 172 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 MGPP08493 103 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 TRGC1P0CF51 173 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 SLAQ13239 276 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 ZNF56Q15929 161 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 WDR73Q6P4I2 378 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 C14orf178Q8N769 122 aaPredicted RBP10.51□□□□□ -0.73
NUP54-213ENST00000513352 NUP35Q8NFH5 326 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 KRTAP3-3Q9BYR6 98 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 KRTAP3-2Q9BYR7 98 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 PRO0255Q9UI72 69 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 HHLA3Q9XRX5 114 aa10.51□□□□□ -0.73
NUP54-213ENST00000513352 A0A1B0GUT8 65 aa10.5□□□□□ -0.73
NUP54-213ENST00000513352 F5H697 171 aa10.5□□□□□ -0.73
NUP54-213ENST00000513352 ZFP2Q6ZN57 461 aa10.5□□□□□ -0.73
NUP54-213ENST00000513352 SMIM15Q7Z3B0 74 aa10.5□□□□□ -0.73
NUP54-213ENST00000513352 CLRN3Q8NCR9 226 aa10.5□□□□□ -0.73
NUP54-213ENST00000513352 FAM210BQ96KR6 192 aa10.5□□□□□ -0.73
NUP54-213ENST00000513352 CRYGDP07320 174 aa10.49□□□□□ -0.73
NUP54-213ENST00000513352 GATA1P15976 413 aaPredicted RBP10.49□□□□□ -0.73
NUP54-213ENST00000513352 CRYBA4P53673 196 aa10.49□□□□□ -0.73
NUP54-213ENST00000513352 FOXA3P55318 350 aaPredicted RBP10.49□□□□□ -0.73
NUP54-213ENST00000513352 RIGQ13278 110 aa10.49□□□□□ -0.73
NUP54-213ENST00000513352 CNFNQ9BYD5 112 aa10.49□□□□□ -0.73
NUP54-213ENST00000513352 CTDSP1Q9GZU7 261 aa10.49□□□□□ -0.73
NUP54-213ENST00000513352 RPS10P5Q9NQ39 176 aa10.49□□□□□ -0.73
NUP54-213ENST00000513352 C7orf77A4D0Y5 90 aa10.48□□□□□ -0.73
NUP54-213ENST00000513352 SNAPINO95295 136 aa10.48□□□□□ -0.73
NUP54-213ENST00000513352 EVI2AP22794 236 aa10.48□□□□□ -0.73
NUP54-213ENST00000513352 RHEBQ15382 184 aa10.48□□□□□ -0.73
NUP54-213ENST00000513352 MRPL54Q6P161 138 aaKnown RBP10.48□□□□□ -0.73
NUP54-213ENST00000513352 SVBPQ8N300 66 aa10.48□□□□□ -0.73
NUP54-213ENST00000513352 C15orf53Q8NAA6 179 aa10.48□□□□□ -0.73
NUP54-213ENST00000513352 PRADC1Q9BSG0 188 aa10.48□□□□□ -0.73
NUP54-213ENST00000513352 K7EQD1 137 aa10.47□□□□□ -0.73
NUP54-213ENST00000513352 FAM3BP58499 235 aaPredicted RBP10.47□□□□□ -0.73
NUP54-213ENST00000513352 UFSP1Q6NVU6 142 aa10.47□□□□□ -0.73
NUP54-213ENST00000513352 Q6ZSN1 163 aa10.47□□□□□ -0.73
NUP54-213ENST00000513352 SLC25A29Q8N8R3 303 aa10.47□□□□□ -0.73
NUP54-213ENST00000513352 VSIG2Q96IQ7 327 aa10.47□□□□□ -0.73
NUP54-213ENST00000513352 DPH3P1Q9H4G8 78 aa10.47□□□□□ -0.73
NUP54-213ENST00000513352 ICOSQ9Y6W8 199 aa10.47□□□□□ -0.73
NUP54-213ENST00000513352 DNAH7Q8WXX0 4024 aa10.46□□□□□ -0.73
NUP54-213ENST00000513352 LOC100131303A0A0U1RQF7 123 aa10.46□□□□□ -0.73
NUP54-213ENST00000513352 GYPEP15421 78 aa10.46□□□□□ -0.73
NUP54-213ENST00000513352 RHOHQ15669 191 aa10.46□□□□□ -0.73
NUP54-213ENST00000513352 KCNIP4Q6PIL6 250 aa10.46□□□□□ -0.73
NUP54-213ENST00000513352 APLNQ9ULZ1 77 aa10.46□□□□□ -0.73
NUP54-213ENST00000513352 TRBV6-4A0A1B0GX49 114 aa10.45□□□□□ -0.74
NUP54-213ENST00000513352 S100PP25815 95 aa10.45□□□□□ -0.74
NUP54-213ENST00000513352 CAMPP49913 170 aa10.45□□□□□ -0.74
NUP54-213ENST00000513352 TCTAP57738 103 aa10.45□□□□□ -0.74
NUP54-213ENST00000513352 RAB4BP61018 213 aa10.45□□□□□ -0.74
NUP54-213ENST00000513352 A0A087WWC5 75 aa10.44□□□□□ -0.74
NUP54-213ENST00000513352 A0A096LPF7 62 aa10.44□□□□□ -0.74
NUP54-213ENST00000513352 H3BNG1 76 aa10.44□□□□□ -0.74
NUP54-213ENST00000513352 SRIP30626 198 aa10.44□□□□□ -0.74
NUP54-213ENST00000513352 HBBP68871 147 aa10.44□□□□□ -0.74
NUP54-213ENST00000513352 KIF25-AS1Q9Y6Z4 181 aa10.44□□□□□ -0.74
NUP54-213ENST00000513352 URGCP-MRPS24S4R325 110 aa10.44□□□□□ -0.74
NUP54-213ENST00000513352 A0A1B0GW15 77 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 GAGE12JA6NER3 117 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 S100A8P05109 93 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 P0DMU3 169 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 FAM231AP0DMU4 169 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 FAM231CP0DMU5 169 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 GAGE1Q13065 139 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 GAGE4Q13068 117 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 GAGE5Q13069 117 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 MRPL23Q16540 153 aaKnown RBP10.43□□□□□ -0.74
NUP54-213ENST00000513352 GAGE13Q4V321 117 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 SUMO4Q6EEV6 95 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 TENM2Q9NT68 2774 aa10.43□□□□□ -0.74
NUP54-213ENST00000513352 ATP5L2Q7Z4Y8 100 aa10.42□□□□□ -0.74
NUP54-213ENST00000513352 UBE2DNLQ8IWF7 75 aa10.42□□□□□ -0.74
NUP54-213ENST00000513352 BTF3L4Q96K17 158 aa10.42□□□□□ -0.74
NUP54-213ENST00000513352 IMMP2LQ96T52 175 aa10.42□□□□□ -0.74
NUP54-213ENST00000513352 TMEM191AQ9H0A3 160 aa10.42□□□□□ -0.74
NUP54-213ENST00000513352 TRAV26-2A0A0B4J265 109 aa10.41□□□□□ -0.74
NUP54-213ENST00000513352 H7C1H1 209 aa10.41□□□□□ -0.74
NUP54-213ENST00000513352 LINC00315P59091 139 aa10.41□□□□□ -0.74
NUP54-213ENST00000513352 AMN1Q8IY45 258 aa10.41□□□□□ -0.74
NUP54-213ENST00000513352 TMEM242Q9NWH2 141 aa10.41□□□□□ -0.74
NUP54-213ENST00000513352 A0A1B0GXF2 115 aa10.4□□□□□ -0.74
NUP54-213ENST00000513352 RPL36AP83881 106 aaKnown RBP10.4□□□□□ -0.74
NUP54-213ENST00000513352 NEGR1Q7Z3B1 354 aa10.4□□□□□ -0.74
NUP54-213ENST00000513352 RPL36ALQ969Q0 106 aaKnown RBP10.4□□□□□ -0.74
NUP54-213ENST00000513352 Q9UF83 564 aa10.4□□□□□ -0.74
NUP54-213ENST00000513352 TRBV10-1A0A0K0K1A3 114 aa10.39□□□□□ -0.75
NUP54-213ENST00000513352 LY6G6CO95867 125 aa10.39□□□□□ -0.75
NUP54-213ENST00000513352 RASL11AQ6T310 242 aa10.39□□□□□ -0.75
NUP54-213ENST00000513352 ATRAIDQ6UW56 229 aa10.39□□□□□ -0.75
NUP54-213ENST00000513352 SH2D6Q7Z4S9 175 aa10.39□□□□□ -0.75
NUP54-213ENST00000513352 ZNRF2Q8NHG8 242 aa10.39□□□□□ -0.75
NUP54-213ENST00000513352 CSMD3Q7Z407 3707 aa10.38□□□□□ -0.75
NUP54-213ENST00000513352 TRAV9-1A0A075B6T8 112 aa10.38□□□□□ -0.75
NUP54-213ENST00000513352 CCL18P55774 89 aa10.38□□□□□ -0.75
NUP54-213ENST00000513352 NEXN-AS1Q8NBZ9 246 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms