RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 HSPG2P98160 4391 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 TRGV4A0A0C4DH28 118 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 IGLL5B9A064 214 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 PPP1R2P9O14990 202 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 NXPH4O95158 308 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 HOXA5P20719 270 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 CFAP126Q5VTH2 177 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 GFRA4Q9GZZ7 299 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 VPS13DQ5THJ4 4388 aa7.05□□□□□ -1.28
NUP54-203ENST00000504173 IGHV3-73A0A0B4J1V6 119 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 HIGD1CA8MV81 97 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 MT-ND4LP03901 98 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 FHL2Q14192 279 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 RNF212Q495C1 297 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 FAM74A4Q5TZK3 123 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 TMEM88Q6PEY1 159 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 BORCS7Q96B45 105 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 ANAPC16Q96DE5 110 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 FAM210BQ96KR6 192 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 PGLYRP4Q96LB8 373 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 AP1S3Q96PC3 154 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 JPT2Q9H910 190 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 CARHSP1Q9Y2V2 147 aaKnown RBP7.04□□□□□ -1.28
NUP54-203ENST00000504173 FAT2Q9NYQ8 4349 aa7.04□□□□□ -1.28
NUP54-203ENST00000504173 IGHV4-4A0A075B6R2 117 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 TRAV26-1A0A087WT03 109 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 A0A087WWL8 130 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 A0A0J9YY99 117 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 FAM231BA6NCW3 169 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 RHODO00212 210 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 CIDEAO60543 219 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 NTF3P20783 257 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 FOXA3P55318 350 aaPredicted RBP7.03□□□□□ -1.28
NUP54-203ENST00000504173 SLAQ13239 276 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 NDUFA5Q16718 116 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 C10orf91Q5T1B1 145 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 WDR73Q6P4I2 378 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 SLC7A5P1Q8MH63 180 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 CNFNQ9BYD5 112 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 SAMD10Q9BYL1 202 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 HHLA3Q9XRX5 114 aa7.03□□□□□ -1.28
NUP54-203ENST00000504173 SMIM27A0A1W2PRY6 76 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 TRGC1P0CF51 173 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 SMIM17P0DL12 118 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 CRYBA4P53673 196 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 TWIST1Q15672 202 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 ZFP2Q6ZN57 461 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 C14orf178Q8N769 122 aaPredicted RBP7.02□□□□□ -1.29
NUP54-203ENST00000504173 NUP35Q8NFH5 326 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 MSRB1Q9NZV6 116 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 NAT8BQ9UHF3 227 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 PRO0255Q9UI72 69 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 NACAE9PAV3 2078 aa7.02□□□□□ -1.29
NUP54-203ENST00000504173 A0A1B0GUT8 65 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 PAX4O43316 350 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 APOC3P02656 99 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 CRYGDP07320 174 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 GATA1P15976 413 aaPredicted RBP7.01□□□□□ -1.29
NUP54-203ENST00000504173 TCTAP57738 103 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 ZNF56Q15929 161 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 SMIM15Q7Z3B0 74 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 C15orf53Q8NAA6 179 aa7.01□□□□□ -1.29
NUP54-203ENST00000504173 A0A1B0GVY2 172 aa7□□□□□ -1.29
NUP54-203ENST00000504173 H3BNG1 76 aa7□□□□□ -1.29
NUP54-203ENST00000504173 NUDT3O95989 172 aa7□□□□□ -1.29
NUP54-203ENST00000504173 MGPP08493 103 aa7□□□□□ -1.29
NUP54-203ENST00000504173 EVI2AP22794 236 aa7□□□□□ -1.29
NUP54-203ENST00000504173 RIGQ13278 110 aa7□□□□□ -1.29
NUP54-203ENST00000504173 RHOHQ15669 191 aa7□□□□□ -1.29
NUP54-203ENST00000504173 UFSP1Q6NVU6 142 aa7□□□□□ -1.29
NUP54-203ENST00000504173 SVBPQ8N300 66 aa7□□□□□ -1.29
NUP54-203ENST00000504173 SLC25A29Q8N8R3 303 aa7□□□□□ -1.29
NUP54-203ENST00000504173 CLRN3Q8NCR9 226 aa7□□□□□ -1.29
NUP54-203ENST00000504173 VSIG2Q96IQ7 327 aa7□□□□□ -1.29
NUP54-203ENST00000504173 PRADC1Q9BSG0 188 aa7□□□□□ -1.29
NUP54-203ENST00000504173 CTDSP1Q9GZU7 261 aa7□□□□□ -1.29
NUP54-203ENST00000504173 APLNQ9ULZ1 77 aa7□□□□□ -1.29
NUP54-203ENST00000504173 DNAH2Q9P225 4427 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 TRBV6-4A0A1B0GX49 114 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 C7orf77A4D0Y5 90 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 F5H697 171 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 K7EQD1 137 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 GYPEP15421 78 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 RHEBQ15382 184 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 Q6ZSN1 163 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 DPH3P1Q9H4G8 78 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 RPS10P5Q9NQ39 176 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 ICOSQ9Y6W8 199 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 KIF25-AS1Q9Y6Z4 181 aa6.99□□□□□ -1.29
NUP54-203ENST00000504173 DNAH6Q9C0G6 4158 aa6.98□□□□□ -1.29
NUP54-203ENST00000504173 LOC100131303A0A0U1RQF7 123 aa6.98□□□□□ -1.29
NUP54-203ENST00000504173 SNAPINO95295 136 aa6.98□□□□□ -1.29
NUP54-203ENST00000504173 FAM3BP58499 235 aaPredicted RBP6.98□□□□□ -1.29
NUP54-203ENST00000504173 RAB4BP61018 213 aa6.98□□□□□ -1.29
NUP54-203ENST00000504173 MRPL54Q6P161 138 aaKnown RBP6.98□□□□□ -1.29
NUP54-203ENST00000504173 A0A087WWC5 75 aa6.97□□□□□ -1.29
NUP54-203ENST00000504173 A0A096LPF7 62 aa6.97□□□□□ -1.29
NUP54-203ENST00000504173 SRIP30626 198 aa6.97□□□□□ -1.29
NUP54-203ENST00000504173 CAMPP49913 170 aa6.97□□□□□ -1.29
NUP54-203ENST00000504173 LINC00315P59091 139 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms