RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MRPL53Q96EL3 112 aaKnown RBP10.32□□□□□ -0.76
USP40-208ENST00000450966 LYPD6Q86Y78 171 aa10.32□□□□□ -0.76
USP40-208ENST00000450966 ARHGEF17Q96PE2 2063 aaPredicted RBP10.32□□□□□ -0.76
USP40-208ENST00000450966 DKK1O94907 266 aa10.32□□□□□ -0.76
USP40-208ENST00000450966 WT1-ASQ06250 92 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 COX7B2Q8TF08 81 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 CHKB-CPT1BH3BT56 60 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 SPRY4Q9C004 299 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 UBE2AP49459 152 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 HIST2H2BCQ6DN03 193 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 HIST2H2BDQ6DRA6 164 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 Q6JHZ5 121 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 ZNF833PQ6ZTB9 187 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 ZMAT4Q9H898 229 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 HEATR1Q9H583 2144 aaKnown RBP10.31□□□□□ -0.76
USP40-208ENST00000450966 ENHOQ6UWT2 76 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 FAM167A-AS1Q96KT0 104 aa10.31□□□□□ -0.76
USP40-208ENST00000450966 RUSC1-AS1Q66K80 236 aa10.3□□□□□ -0.76
USP40-208ENST00000450966 PROK2Q9HC23 129 aa10.3□□□□□ -0.76
USP40-208ENST00000450966 MDFICQ9P1T7 246 aa10.3□□□□□ -0.76
USP40-208ENST00000450966 SPTBN1Q01082 2364 aaKnown RBP10.3□□□□□ -0.76
USP40-208ENST00000450966 TRIAP1O43715 76 aa10.3□□□□□ -0.76
USP40-208ENST00000450966 IGKV2D-26A0A0A0MRZ7 120 aa10.3□□□□□ -0.76
USP40-208ENST00000450966 MBD6Q96DN6 1003 aa10.3□□□□□ -0.76
USP40-208ENST00000450966 NLRC5Q86WI3 1866 aa10.29□□□□□ -0.76
USP40-208ENST00000450966 IGLV2-8P01709 118 aa10.29□□□□□ -0.76
USP40-208ENST00000450966 A0A0J9YY99 117 aa10.29□□□□□ -0.76
USP40-208ENST00000450966 PLXNA4Q9HCM2 1894 aa10.29□□□□□ -0.76
USP40-208ENST00000450966 IGHV1-58A0A0C4DH39 117 aa10.29□□□□□ -0.76
USP40-208ENST00000450966 ATP6V0E1O15342 81 aa10.29□□□□□ -0.76
USP40-208ENST00000450966 RPL39LQ96EH5 51 aaKnown RBP10.29□□□□□ -0.76
USP40-208ENST00000450966 FANCMQ8IYD8 2048 aa10.29□□□□□ -0.76
USP40-208ENST00000450966 MAPKAPK5-AS1Q8N8E1 139 aa10.28□□□□□ -0.76
USP40-208ENST00000450966 MSRB1Q9NZV6 116 aa10.28□□□□□ -0.76
USP40-208ENST00000450966 A6NED7 52 aa10.28□□□□□ -0.76
USP40-208ENST00000450966 MRPL36Q9P0J6 103 aaKnown RBP10.28□□□□□ -0.76
USP40-208ENST00000450966 CLPSL1A2RUU4 121 aa10.28□□□□□ -0.76
USP40-208ENST00000450966 ZNF561-AS1K7EIQ3 104 aa10.27□□□□□ -0.76
USP40-208ENST00000450966 Q9HAA7 133 aa10.27□□□□□ -0.76
USP40-208ENST00000450966 ZNF134P52741 427 aa10.27□□□□□ -0.77
USP40-208ENST00000450966 XCL2Q9UBD3 114 aa10.27□□□□□ -0.77
USP40-208ENST00000450966 CACNA1BQ00975 2339 aa10.27□□□□□ -0.77
USP40-208ENST00000450966 A0A0J9YXY3 114 aa10.27□□□□□ -0.77
USP40-208ENST00000450966 WI2-2373I1.2A0A1W2PRP0 233 aa10.27□□□□□ -0.77
USP40-208ENST00000450966 FBXL19-AS1Q494R0 122 aa10.27□□□□□ -0.77
USP40-208ENST00000450966 ZNF491Q8N8L2 437 aa10.27□□□□□ -0.77
USP40-208ENST00000450966 RMI2Q96E14 147 aa10.26□□□□□ -0.77
USP40-208ENST00000450966 ABCA4P78363 2273 aa10.26□□□□□ -0.77
USP40-208ENST00000450966 C15orf65H3BRN8 121 aa10.26□□□□□ -0.77
USP40-208ENST00000450966 RNASE13Q5GAN3 156 aaKnown RBP10.26□□□□□ -0.77
USP40-208ENST00000450966 SNURFQ9Y675 71 aa10.26□□□□□ -0.77
USP40-208ENST00000450966 LST1O00453 97 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 HIGD2BQ4VC39 106 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 MAPK1IP1LQ8NDC0 245 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 Q6ZQT7 251 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 CDIP1Q9H305 208 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 TRBV7-3A0A075B6L6 115 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 C17orf77Q96MU5 243 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 TRAV7A0A075B6U4 112 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 IGHV3-30-3P0DP02 117 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 LINC00310P59036 64 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 PATE2Q6UY27 113 aa10.25□□□□□ -0.77
USP40-208ENST00000450966 NEXN-AS1Q8NBZ9 246 aa10.24□□□□□ -0.77
USP40-208ENST00000450966 COL6A6A6NMZ7 2263 aa10.24□□□□□ -0.77
USP40-208ENST00000450966 RIF1Q5UIP0 2472 aaKnown RBP10.24□□□□□ -0.77
USP40-208ENST00000450966 NDUFA4O00483 81 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 FOXE3Q13461 319 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 PIK3CD-AS1Q5SR53 167 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 ZNRF2Q8NHG8 242 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 IGHV3-30P01768 117 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 IGHV3-30-5P0DP03 117 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 MED14OSP0DP75 135 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 ARTNQ5T4W7 220 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 C9orf66Q5T8R8 295 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 KLK5Q9Y337 293 aaPredicted RBP10.23□□□□□ -0.77
USP40-208ENST00000450966 LOXP28300 417 aaPredicted RBP10.23□□□□□ -0.77
USP40-208ENST00000450966 NKAPP1Q8N9T2 125 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 MED12Q93074 2177 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 POLEQ07864 2286 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 F8WDY8 70 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 SPINK13Q1W4C9 94 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 NFE4Q86UQ8 179 aa10.23□□□□□ -0.77
USP40-208ENST00000450966 NDUFB1O75438 58 aa10.22□□□□□ -0.77
USP40-208ENST00000450966 ODF3L1Q8IXM7 274 aa10.22□□□□□ -0.77
USP40-208ENST00000450966 KMT2EQ8IZD2 1858 aa10.22□□□□□ -0.77
USP40-208ENST00000450966 U3KQK5 164 aa10.22□□□□□ -0.77
USP40-208ENST00000450966 MYO7BQ6PIF6 2116 aa10.22□□□□□ -0.77
USP40-208ENST00000450966 MIFP14174 115 aa10.22□□□□□ -0.77
USP40-208ENST00000450966 PI4KAP42356 2102 aa10.22□□□□□ -0.77
USP40-208ENST00000450966 NCOR1O75376 2440 aa10.21□□□□□ -0.77
USP40-208ENST00000450966 IGHV3-38A0A0C4DH36 116 aa10.21□□□□□ -0.77
USP40-208ENST00000450966 RPL39P62891 51 aaKnown RBP10.21□□□□□ -0.77
USP40-208ENST00000450966 TEX22C9J3V5 150 aa10.21□□□□□ -0.77
USP40-208ENST00000450966 NDUFS5O43920 106 aa10.21□□□□□ -0.77
USP40-208ENST00000450966 C17orf58Q2M2W7 97 aa10.21□□□□□ -0.77
USP40-208ENST00000450966 SIRPDQ9H106 197 aa10.21□□□□□ -0.77
USP40-208ENST00000450966 ABCA1O95477 2261 aa10.21□□□□□ -0.77
USP40-208ENST00000450966 H7C423 109 aa10.21□□□□□ -0.78
USP40-208ENST00000450966 Q6ZSR3 168 aa10.21□□□□□ -0.78
USP40-208ENST00000450966 FAM19A3Q7Z5A8 133 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms