RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 AJUBAQ96IF1 538 aa12.24□□□□□ -0.45
COL17A1-202ENST00000369733 TM2D2Q9BX73 214 aa12.24□□□□□ -0.45
COL17A1-202ENST00000369733 ADAMTS9Q9P2N4 1935 aa12.24□□□□□ -0.45
COL17A1-202ENST00000369733 RNF183Q96D59 192 aa12.24□□□□□ -0.45
COL17A1-202ENST00000369733 CACNA1BQ00975 2339 aa12.24□□□□□ -0.45
COL17A1-202ENST00000369733 LGALS9O00182 355 aa12.24□□□□□ -0.45
COL17A1-202ENST00000369733 MT-ATP8P03928 68 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 FANCD2OSQ96PS1 177 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 CREBBPQ92793 2442 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 NBASA2RRP1 2371 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 H3BT86 120 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 ZNF561-AS1K7EIQ3 104 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 IGLC6P0CF74 106 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 LINC00574Q9H8X3 128 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 HOXD3P31249 432 aaPredicted RBP12.23□□□□□ -0.45
COL17A1-202ENST00000369733 Q8N1Y9 231 aa12.23□□□□□ -0.45
COL17A1-202ENST00000369733 ATOX1O00244 68 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 DEFB1P60022 68 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 C2orf16Q68DN1 1984 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 IGKV3D-7A0A0C4DH55 119 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 CLPSL2Q6UWE3 100 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 Q8N7P7 452 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 TRAV25A0A0B4J276 109 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 C3orf56Q8N813 242 aa12.22□□□□□ -0.45
COL17A1-202ENST00000369733 SND1-IT1Q9HBX3 110 aa12.21□□□□□ -0.45
COL17A1-202ENST00000369733 A0A1B0GX51 115 aa12.21□□□□□ -0.45
COL17A1-202ENST00000369733 NOP10Q9NPE3 64 aaKnown RBP12.21□□□□□ -0.45
COL17A1-202ENST00000369733 NOTCH3Q9UM47 2321 aa12.21□□□□□ -0.46
COL17A1-202ENST00000369733 IGKV2D-26A0A0A0MRZ7 120 aa12.21□□□□□ -0.46
COL17A1-202ENST00000369733 XCL1P47992 114 aa12.21□□□□□ -0.46
COL17A1-202ENST00000369733 PIP4P1Q86T03 277 aa12.21□□□□□ -0.46
COL17A1-202ENST00000369733 SPRY4Q9C004 299 aa12.21□□□□□ -0.46
COL17A1-202ENST00000369733 WISP2O76076 250 aa12.2□□□□□ -0.46
COL17A1-202ENST00000369733 C5orf56Q8N8D9 126 aa12.2□□□□□ -0.46
COL17A1-202ENST00000369733 MRAPQ8TCY5 172 aa12.2□□□□□ -0.46
COL17A1-202ENST00000369733 H0YGX0 51 aa12.2□□□□□ -0.46
COL17A1-202ENST00000369733 NUP210LQ5VU65 1888 aa12.2□□□□□ -0.46
COL17A1-202ENST00000369733 F5H768 121 aa12.2□□□□□ -0.46
COL17A1-202ENST00000369733 C2orf91Q6ZV80 131 aa12.2□□□□□ -0.46
COL17A1-202ENST00000369733 OPRPNQ99935 248 aaPredicted RBP12.2□□□□□ -0.46
COL17A1-202ENST00000369733 DAD1P61803 113 aa12.19□□□□□ -0.46
COL17A1-202ENST00000369733 A0A096LPF7 62 aa12.19□□□□□ -0.46
COL17A1-202ENST00000369733 RBM3P98179 157 aaKnown RBP12.19□□□□□ -0.46
COL17A1-202ENST00000369733 A0A1W2PNU3 283 aaPredicted RBP12.19□□□□□ -0.46
COL17A1-202ENST00000369733 MYCNOSP40205 109 aa12.19□□□□□ -0.46
COL17A1-202ENST00000369733 LINC00310P59036 64 aa12.19□□□□□ -0.46
COL17A1-202ENST00000369733 IGHV4-59P01825 116 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 C5orf38Q86SI9 138 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 DYSFO75923 2080 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 MED13LQ71F56 2210 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 J3KT08 172 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 MAPKAPK5-AS1Q8N8E1 139 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 ABCA4P78363 2273 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 CRIP1P50238 77 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 IGHV1-58A0A0C4DH39 117 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 BLCAPP62952 87 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 U3KQK5 164 aa12.18□□□□□ -0.46
COL17A1-202ENST00000369733 ANGP03950 147 aaKnown RBP12.17□□□□□ -0.46
COL17A1-202ENST00000369733 TRAV4A0A0B4J268 109 aa12.17□□□□□ -0.46
COL17A1-202ENST00000369733 J3QLI3 93 aa12.17□□□□□ -0.46
COL17A1-202ENST00000369733 Q71RC1 249 aaPredicted RBP12.17□□□□□ -0.46
COL17A1-202ENST00000369733 APRG1Q8IVJ8 170 aa12.17□□□□□ -0.46
COL17A1-202ENST00000369733 C20orf203Q8NBC4 194 aa12.17□□□□□ -0.46
COL17A1-202ENST00000369733 NEXN-AS1Q8NBZ9 246 aa12.17□□□□□ -0.46
COL17A1-202ENST00000369733 IGHV3-30-3P0DP02 117 aa12.17□□□□□ -0.46
COL17A1-202ENST00000369733 DEFB112Q30KQ8 113 aa12.17□□□□□ -0.46
COL17A1-202ENST00000369733 NDUFV3P56181 108 aaKnown RBP12.16□□□□□ -0.46
COL17A1-202ENST00000369733 DEFB136Q30KP8 78 aa12.16□□□□□ -0.46
COL17A1-202ENST00000369733 NKAPP1Q8N9T2 125 aa12.16□□□□□ -0.46
COL17A1-202ENST00000369733 K7EQD1 137 aa12.16□□□□□ -0.46
COL17A1-202ENST00000369733 SVIPQ8NHG7 77 aa12.16□□□□□ -0.46
COL17A1-202ENST00000369733 IGHV4-38-2P0DP08 117 aa12.16□□□□□ -0.46
COL17A1-202ENST00000369733 VSIG2Q96IQ7 327 aa12.16□□□□□ -0.46
COL17A1-202ENST00000369733 COX7B2Q8TF08 81 aa12.15□□□□□ -0.46
COL17A1-202ENST00000369733 Q8N976 141 aa12.15□□□□□ -0.46
COL17A1-202ENST00000369733 SRCAPQ6ZRS2 3230 aa12.15□□□□□ -0.46
COL17A1-202ENST00000369733 MED12LQ86YW9 2145 aa12.15□□□□□ -0.46
COL17A1-202ENST00000369733 NFE4Q86UQ8 179 aa12.15□□□□□ -0.46
COL17A1-202ENST00000369733 RNF152Q8N8N0 203 aa12.14□□□□□ -0.47
COL17A1-202ENST00000369733 MDFICQ9P1T7 246 aa12.14□□□□□ -0.47
COL17A1-202ENST00000369733 LTBP2Q14767 1821 aa12.14□□□□□ -0.47
COL17A1-202ENST00000369733 DAZ2Q13117 558 aaKnown RBP12.14□□□□□ -0.47
COL17A1-202ENST00000369733 DAZ4Q86SG3 579 aaKnown RBP12.14□□□□□ -0.47
COL17A1-202ENST00000369733 DAZ3Q9NR90 486 aaKnown RBP12.14□□□□□ -0.47
COL17A1-202ENST00000369733 UNQ9165/PRO28630Q6UXU0 137 aa12.14□□□□□ -0.47
COL17A1-202ENST00000369733 ZFP36P26651 326 aaKnown RBP12.14□□□□□ -0.47
COL17A1-202ENST00000369733 TNRC6BQ9UPQ9 1833 aaKnown RBP12.14□□□□□ -0.47
COL17A1-202ENST00000369733 PCDH15Q96QU1 1955 aa12.14□□□□□ -0.47
COL17A1-202ENST00000369733 SLURP1P55000 103 aa12.14□□□□□ -0.47
COL17A1-202ENST00000369733 RNF185Q96GF1 192 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 VPREB3Q9UKI3 123 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.13□□□□□ -0.47
COL17A1-202ENST00000369733 ZGRF1Q86YA3 2104 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 IGLV2-11P01706 119 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 A0A0J9YXY3 114 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 TEX49A0A1B0GTD5 131 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 TMEM258P61165 79 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 MIAQ16674 131 aa12.13□□□□□ -0.47
COL17A1-202ENST00000369733 CDK2AP2O75956 126 aa12.12□□□□□ -0.47
COL17A1-202ENST00000369733 K7EMT4 169 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms