RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 SUPT4H1P63272 117 aaKnown RBP2.31□□□□□ -2.04
VPS13C-210ENST00000561258 PRB3Q04118 309 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-210ENST00000561258 SPRNQ5BIV9 151 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 SLC30A7Q8NEW0 376 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 NABP2Q9BQ15 211 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 ATPIF1Q9UII2 106 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 TRGV4A0A0C4DH28 118 aa2.3□□□□□ -2.04
VPS13C-210ENST00000561258 UBL3O95164 117 aa2.3□□□□□ -2.04
VPS13C-210ENST00000561258 FKBP2P26885 142 aaKnown RBP2.3□□□□□ -2.04
VPS13C-210ENST00000561258 CRYBA4P53673 196 aa2.3□□□□□ -2.04
VPS13C-210ENST00000561258 C10orf99Q6UWK7 81 aa2.3□□□□□ -2.04
VPS13C-210ENST00000561258 Q6ZTI0 123 aa2.3□□□□□ -2.04
VPS13C-210ENST00000561258 BPIFA4PQ86YQ2 179 aa2.3□□□□□ -2.04
VPS13C-210ENST00000561258 LINC00470Q9BZP3 86 aa2.3□□□□□ -2.04
VPS13C-210ENST00000561258 TRBV19A0A075B6N1 114 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 TRBV10-2A0A0K0K1G8 114 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 A0A1B0GVG6 124 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 LY6LH3BQJ8 138 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 HMGB3O15347 200 aaKnown RBP2.29□□□□□ -2.04
VPS13C-210ENST00000561258 NFYAP23511 347 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-210ENST00000561258 ASIPP42127 132 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 TAS2R41P59536 307 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 GNG3P63215 75 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 ERHP84090 104 aaKnown RBP2.29□□□□□ -2.04
VPS13C-210ENST00000561258 TPRXLQ17RH7 258 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 DEFB136Q30KP8 78 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 FAM27BQ5VT28 67 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 LCA10Q71F78 164 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 PFN4Q8NHR9 129 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 ZNF563Q8TA94 476 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 C10orf82Q8WW14 230 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 SERPINI1Q99574 410 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 PRNDQ9UKY0 176 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 VPS13BQ7Z7G8 4022 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 TNCP24821 2201 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 LRP1BQ9NZR2 4599 aa2.29□□□□□ -2.04
VPS13C-210ENST00000561258 DNAH5Q8TE73 4624 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 A0A087X0T9 212 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 PGRMC1O00264 195 aaKnown RBP2.28□□□□□ -2.04
VPS13C-210ENST00000561258 IFNA14P01570 189 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 IFNA4P05014 189 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 SRIP30626 198 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 ATP5G3P48201 142 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 SRP9P49458 86 aaKnown RBP2.28□□□□□ -2.04
VPS13C-210ENST00000561258 FXYD2P54710 66 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 TCTAP57738 103 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 TSNQ15631 228 aaKnown RBP2.28□□□□□ -2.04
VPS13C-210ENST00000561258 MIR17HGQ75NE6 70 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 CLVS1Q8IUQ0 354 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-210ENST00000561258 SMIM20Q8N5G0 67 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 SCGB3A1Q96QR1 104 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 GINS3Q9BRX5 216 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 OR2J1Q9GZK6 312 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 SLC39A9Q9NUM3 307 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 ACER3Q9NUN7 267 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 CRCT1Q9UGL9 99 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 ERGIC3Q9Y282 383 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 UFC1Q9Y3C8 167 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 V9GYQ6 96 aa2.28□□□□□ -2.04
VPS13C-210ENST00000561258 FAT4Q6V0I7 4981 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 ARRDC5A6NEK1 342 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 ZNF705FA8MVS1 300 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-210ENST00000561258 NDUFA2O43678 99 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 IGKV1-16P04430 117 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 SPI1P17947 270 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 EIF2B2P49770 351 aaKnown RBP2.27□□□□□ -2.05
VPS13C-210ENST00000561258 TMEM258P61165 79 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 NCALDP61601 193 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 OR8B8Q15620 311 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 LINC01554Q52M75 96 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 TRIQKQ629K1 86 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 GRINAQ7Z429 371 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 COMMD6Q7Z4G1 85 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 KTN1-AS1Q86SY8 53 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 OR13C6PQ8NH95 151 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 DNAJC9Q8WXX5 260 aa2.27□□□□□ -2.05
VPS13C-210ENST00000561258 AMMECR1Q9Y4X0 333 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-210ENST00000561258 LRP2P98164 4655 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 GNG14A0A1W2PPG7 69 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 J3QQQ9 107 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 OVOL1O14753 267 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 GYPAP02724 150 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 S100A4P26447 101 aaKnown RBP2.26□□□□□ -2.05
VPS13C-210ENST00000561258 PIGPP57054 158 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 GNG5P63218 68 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 AKR1C8PQ5T2L2 129 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 C1orf134Q5TEV5 83 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 TMEM106AQ96A25 262 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 OR4C12Q96R67 309 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 TIMM21Q9BVV7 248 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 SH3BGRL3Q9H299 93 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 SS18L2Q9UHA2 77 aa2.26□□□□□ -2.05
VPS13C-210ENST00000561258 J3QRE1 110 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 J3QRK9 145 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 M0R1W7 72 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 PGLYRP1O75594 196 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-210ENST00000561258 RPSAP08865 295 aaKnown RBP2.25□□□□□ -2.05
VPS13C-210ENST00000561258 POLR2HP52434 150 aaKnown RBP2.25□□□□□ -2.05
VPS13C-210ENST00000561258 RHOBP62745 196 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms