RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 GTSF1Q8WW33 167 aa10.54□□□□□ -0.72
SHMT2-208ENST00000553868 PGLYRP4Q96LB8 373 aa10.54□□□□□ -0.72
SHMT2-208ENST00000553868 TPPP3Q9BW30 176 aa10.54□□□□□ -0.72
SHMT2-208ENST00000553868 TRGV11A0A075B6L2 103 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 LOC102724200A0A096LPH7 203 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-208ENST00000553868 GRIFINA4D1Z8 144 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 IGLC6P0CF74 106 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 CTRLP40313 264 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 DNLZQ5SXM8 178 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 WDR73Q6P4I2 378 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 Q8N1Y9 231 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 LINC00467Q9BRT7 94 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 TMEM208Q9BTX3 173 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 XCL2Q9UBD3 114 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 GOLT1BQ9Y3E0 138 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 MUC4Q99102 2169 aa10.53□□□□□ -0.72
SHMT2-208ENST00000553868 KIR2DL5BA0A0G2JN68 375 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 KIR2DL5BA0A0G2JPC4 375 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 A0A1B0GUT8 65 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 APOC4P55056 127 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 KIR2DL5AQ8N109 375 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 KIR2DL5BQ8NHK3 375 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 LINC01587Q99440 93 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 KRTAP4-5Q9BYR2 181 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 CSTL1Q9H114 145 aa10.52□□□□□ -0.73
SHMT2-208ENST00000553868 MT-ND6P03923 174 aa10.51□□□□□ -0.73
SHMT2-208ENST00000553868 OR5AL1P0C617 328 aa10.51□□□□□ -0.73
SHMT2-208ENST00000553868 RPS10P46783 165 aaKnown RBP10.51□□□□□ -0.73
SHMT2-208ENST00000553868 CACNG7P62955 275 aa10.51□□□□□ -0.73
SHMT2-208ENST00000553868 HBBP68871 147 aa10.51□□□□□ -0.73
SHMT2-208ENST00000553868 MRPL54Q6P161 138 aaKnown RBP10.51□□□□□ -0.73
SHMT2-208ENST00000553868 LYZL1Q6UWQ5 148 aa10.51□□□□□ -0.73
SHMT2-208ENST00000553868 Q6ZQT7 251 aa10.51□□□□□ -0.73
SHMT2-208ENST00000553868 VPS13DQ5THJ4 4388 aa10.51□□□□□ -0.73
SHMT2-208ENST00000553868 CBY3A6NI87 242 aa10.5□□□□□ -0.73
SHMT2-208ENST00000553868 SNAI2O43623 268 aa10.5□□□□□ -0.73
SHMT2-208ENST00000553868 SPINK4O60575 86 aa10.5□□□□□ -0.73
SHMT2-208ENST00000553868 PKHD1P08F94 4074 aa10.49□□□□□ -0.73
SHMT2-208ENST00000553868 H3BVH4 76 aa10.49□□□□□ -0.73
SHMT2-208ENST00000553868 GNRH2O43555 120 aa10.49□□□□□ -0.73
SHMT2-208ENST00000553868 ARMS2P0C7Q2 107 aa10.49□□□□□ -0.73
SHMT2-208ENST00000553868 SSBP4Q9BWG4 385 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-208ENST00000553868 GNB1LQ9BYB4 327 aa10.49□□□□□ -0.73
SHMT2-208ENST00000553868 CNFNQ9BYD5 112 aa10.49□□□□□ -0.73
SHMT2-208ENST00000553868 HERC1Q15751 4861 aa10.49□□□□□ -0.73
SHMT2-208ENST00000553868 IGHV3-16A0A0C4DH30 117 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 A0A1B0GXF2 115 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 UBE2CO00762 179 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 HLA-DQA1P01909 254 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 RBMY1A1P0DJD3 496 aaKnown RBP10.48□□□□□ -0.73
SHMT2-208ENST00000553868 RBMY1CP0DJD4 496 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 RAB4BP61018 213 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 ZNF415Q09FC8 603 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 RBMY1FQ15415 496 aaKnown RBP10.48□□□□□ -0.73
SHMT2-208ENST00000553868 SPANXN1Q5VSR9 72 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 ZNF575Q86XF7 245 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 PHLDA3Q9Y5J5 127 aa10.48□□□□□ -0.73
SHMT2-208ENST00000553868 TIMM8BQ9Y5J9 83 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-208ENST00000553868 AGRNO00468 2067 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 A8MZ25 164 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 SNURFLB1AK76 121 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 IGHV4-30-4P0DP06 118 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 CAMPP49913 170 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 TWIST1Q15672 202 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 SMIM15Q7Z3B0 74 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 C1orf158Q8N1D5 194 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 SYT8Q8NBV8 401 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 TRAPPC1Q9Y5R8 145 aa10.47□□□□□ -0.73
SHMT2-208ENST00000553868 DYNC1H1Q14204 4646 aaKnown RBP10.46□□□□□ -0.73
SHMT2-208ENST00000553868 IGHV4-4A0A075B6R2 117 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 IGHV3OR16-12A0A075B7B8 117 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 C1orf196B1AJZ1 125 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 GIG44P09565 113 aaPredicted RBP10.46□□□□□ -0.73
SHMT2-208ENST00000553868 RNASE3P12724 160 aaKnown RBP10.46□□□□□ -0.73
SHMT2-208ENST00000553868 HTN1P15515 57 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 ZFP82Q8N141 532 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 FRZBQ92765 325 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 RETNQ9HD89 108 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 SCRT2Q9NQ03 307 aa10.46□□□□□ -0.73
SHMT2-208ENST00000553868 TRGC1P0CF51 173 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 NTF3P20783 257 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 ZNF493Q6ZR52 646 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 TMEM136Q6ZRR5 245 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 CSNK1G2-AS1Q8NCQ2 148 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 C9orf85Q96MD7 179 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 SPATA25Q9BR10 227 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 SPXQ9BT56 116 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 TP53TG3Q9ULZ0 132 aa10.45□□□□□ -0.74
SHMT2-208ENST00000553868 ZNF705AQ6ZN79 300 aaPredicted RBP10.44□□□□□ -0.74
SHMT2-208ENST00000553868 GATD1Q8NB37 220 aa10.44□□□□□ -0.74
SHMT2-208ENST00000553868 OR10AG1Q8NH19 301 aa10.44□□□□□ -0.74
SHMT2-208ENST00000553868 MRPL18Q9H0U6 180 aaKnown RBP10.44□□□□□ -0.74
SHMT2-208ENST00000553868 MDFICQ9P1T7 246 aa10.44□□□□□ -0.74
SHMT2-208ENST00000553868 MUC21A0A0G2JKD1 596 aa10.43□□□□□ -0.74
SHMT2-208ENST00000553868 MUC21A0A140T8X8 626 aa10.43□□□□□ -0.74
SHMT2-208ENST00000553868 SMIM9A6NGZ8 99 aa10.43□□□□□ -0.74
SHMT2-208ENST00000553868 M0R381 172 aa10.43□□□□□ -0.74
SHMT2-208ENST00000553868 NXPH4O95158 308 aa10.43□□□□□ -0.74
SHMT2-208ENST00000553868 APCSP02743 223 aa10.43□□□□□ -0.74
SHMT2-208ENST00000553868 TRGC2P03986 189 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms